ERS5936074
SRA accession
//webtom.cabgrid.res.in/teahapmap
database id
http
database name
Tead HapMap Database
database uri
Sample 25
description
Camellia sinensis
http://purl.obolibrary.org/obo/NCBITaxon_2711
organism
Camellia sinensis
http://purl.obolibrary.org/obo/NCBITaxon_2711
scientific name
Here we have generated first HapMap of tea genome. RNA seq data was downloaded for a total of 369 tea accessions from National Genomics Data Center, BGI (Project ID: CRA001438; https://bigd.big.ac.cn/search?dbId=gsa&amp;q=CRA001438) and EMBL-EBI (Project ID: PRJNA222497; https://www.ebi.ac.uk/ena/data/view/PRJNA222497). Tea polymorphisms were determined from these 369 taxa by mapping data against reference genome of tea (CSS_V1.2) (https://github.com/JiedanChen/TeaGenomeData) with mapping quality threshold 30.
submission description
A first-generation Haplotype map (HapMap) of tea (Camellia sinensis L. O. Kuntz)
submission title