characteristics.text: SAMN00120227
characteristics.characteristic: External Id
characteristics.text: Universite Blaise-Pascal, Clermont-Ferrand
characteristics.characteristic: INSDC center name
characteristics.text: 2011-01-25T10:27:54.590Z
characteristics.characteristic: INSDC first public
characteristics.text: 2014-03-28T17:13:09.590Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS121148
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Generic
characteristics.characteristic: NCBI submission model
characteristics.text: Generic.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS121148
characteristics.characteristic: SRA accession
characteristics.text: The diversity and spatial variability of eukaryote, particularly fungi, was studied in two French aquatic ecosystems (freshwater lake and marin environment). The two freshwater lake ecosystems studies included : the oligomesotrophic Lake Pavin, and the eutrophic Lake Aydat. The two Marins environment investigated included the Atlantic ocean (located close to the city of La Rochelle) and the English Channel at the SOMLIT station (located close to the city of Wimereux). Freshwater samples were collected along a transect from the banks to the centre of each lake, while Marin samples were collected at two dates (May 4 and June 2 for La Rochelle, and March 31 and April 21 for Wimereux). The samples respective biodiversity was analyzed using two the 454-pyrosequencing of 18S rRNA hypervariable V2, V3, and V5 regions using two primer sets (one universal eukaryote, and one specific for fungi). The fungi primers were specifically designed to amplify the major phyla of fungi. Information about the samples: Lake Pavin: country=France: Massif Central, Lake Pavin location: 45.50 N 2.88 E isolation_source=meromictic, dimictic and oligo-mesotrophic lake Type: environmental_sample Lake Aydat: country=France: Massif Central, Lake Aydat location: 45.65 N 2.98 E isolation_source=dimictic and eutrophic lake Type: environmental_sample Atlantic Ocean country=France: Atlantic close to the city of La Rochelle location: 45°59’06’’N, 1°-1°20’W isolation_source=highly productive, and form a macrotidal system Type: environmental_sample English Channel country=France: English channel close to the city of Wimereux location: SOMLIT station isolation_source=mesotrophic marine ecosystem
characteristics.characteristic: description
characteristics.text: ecological metagenomes
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_410657
characteristics.characteristic: organism
characteristics.text: Diversity and spatial variability of eukaryote communities studied by rDNA pyrosquencing for hypervariable region.
characteristics.characteristic: title