characteristics.text: SAMN00138732
characteristics.characteristic: External Id
characteristics.text: Centers for Disease Control
characteristics.characteristic: INSDC center name
characteristics.text: 2010-11-29T22:50:56.367Z
characteristics.characteristic: INSDC first public
characteristics.text: 2015-02-20T15:59:15.073Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS139633
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Generic
characteristics.characteristic: NCBI submission model
characteristics.text: Generic.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS139633
characteristics.characteristic: SRA accession
characteristics.text: Ministere de la Sante Publique et de la Population, Haiti
characteristics.characteristic: collected-by
characteristics.text: 2010
characteristics.characteristic: collection date
characteristics.text: Haiti
characteristics.characteristic: country
characteristics.text: Vibrio cholerae serogroup O1, serotype Ogawa The Haitian Ministry of Public Health and Population (MSPP) was first notified of a cluster of patients with acute watery diarrhea and dehydration on October 19, 2010. Cholera was confirmed several days later. By November 13, 2010, MSPP had reported 16,111 persons hospitalized with acute watery diarrhea and 992 cholera deaths. More information can be found at http://www.cdc.gov/mmwr/PDF/wk/mm5945.pdf. This isolate was recovered from an early case of cholera from the Artibonite Department in Haiti during the 2010 outbreak. A whole genome shotgun sequence has been uploaded to GenBank. The strain matches other outbreak isolates from Haiti by PFGE, cholera toxin sequence-type, and susceptibility profile. It is susceptible to tetracycline (a proxy for doxycycline) and azithromycin, but resistant to sulfisoxazole nalidixic acid, and furazolidone, and has reduced susceptibility to ciprofloxacin.
characteristics.characteristic: description
characteristics.text: Homo sapiens
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_9606
characteristics.characteristic: host
characteristics.text: Pathogen
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_102793
characteristics.characteristic: keywords
characteristics.text: Vibrio cholerae O1 str. 2010EL-1798
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_925768
characteristics.characteristic: organism
characteristics.text: O1
characteristics.characteristic: serogroup
characteristics.text: O1
characteristics.characteristic: serovar
characteristics.text: 2010EL-1798
characteristics.characteristic: strain
characteristics.text: Isolate from Haiti 2010 cholera outbreak
characteristics.characteristic: subsrc_note
characteristics.text: Vibrio cholerae O1 str. 2010EL-1798
characteristics.characteristic: title