SAMN02086282
External Id
Cornell University
INSDC center name
2013-04-30T11:29:01.987Z
INSDC first public
2013-04-30T21:49:14.177Z
INSDC last update
SRS417501
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417501
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;CTCC,Ames28186;TGCA,Ames27149;ACTA,NSL438040;CAGA,NSL438034;AACT,Ames22440;GCGT,PI561565;TGCGA,Ames28943;CGAT,Ab24E;CGCTT,Ames28419;TCACC,Ames12725;CTAGC,Ames27151;ACAAA,Ames26130;TTCTC,Ames24744;AGCCC,PI587131;GTATT,Ames27140;CTGTA,Ames28994;ACCGT,NSL438032;GTAA,NSL437933;GGTTGT,PI560082;CCAGCT,Ames28940;TTCAGA,PI221817;TAGGAA,Ames26137;GCTCTA,NSL437995;CCACAA,Ab608A;GCTTA,Ames27153;CTTCCA,PI601442;GAGATA,CIze42;ATGCCT,PI406107;TATTTTT,NSL437971;CTTGCTT,PI601320;ATGAAAC,blank;AAAAGTT,PI550454;GAATTCA,PI608764;GAACTTC,Ames23395;GGACCTA,Ames20119;GTCGATT,PI517973;AACGCCT,NSL437996;AATATGC,PI542776;ACGACTAC,NSL437982;GGTGT,PI600772;TAGCATGC,PI615190;AGTGGA,PI558527;TAGGCCAT,PI340837;TGCAAGGA,Ames26134;TGGTACGT,PI186188;TCTCAGTC,NSL437993;CCGGATAT,Ames28936;CGCCTTAT,Ames23477;AGGC,Ames27151;GATC,Ames24577;TCAC,CIze40;AGGAT,SA24;ATTGA,Ames28992;CATCT,PI406125;CCTAC,Ames26128;GAGGA,PI198889;GGAAC,Ames26777;GTCAA,PI550465;TAATA,Ab616;TACAT,Ames23402;TCGTT,PI198904;ACCTAA,Ames26121;ATATGT,PI550472;ATCGTA,NSL437998;CATCGT,PI638553;CGCGGT,PI601791;CTATTA,Ames25372;GCCAGT,NSL438002;GGAAGA,NSL437981;GTACTT,Ames28952;GTTGAA,NSL437966;TAACGA,Ames28937;TGGCTA,NSL437910;ACGTGTT,PI340878;ATTAATT,Ames26136;ATTGGAT,Ames19314;CATAAGT,PI601571;CGCTGAT,CIze23;CGGTAGA,NSL437952;CTACGGA,NSL437879;GCGGAAT,PI601574;TAGCGGA,Ames28424;TCGAAGA,Ames28934;TCTGTGA,PI597927;TGCTGGA,NSL75976;AACCGAGA,PI550556;ACAGGGAA,Ames27154;ACGTGGTA,NSL67788;CCATGGGT,PI405706;CGCGGAGA,PI200192;CGTGTGGT,Ames24576;GCTGTGGA,PI607382;GGATTGGT,B73;GTGAGGGT,PI506411;TATCGGGA,NSL22632;TTCCTGGA,Ames28987;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title