SAMN02116465
External Id
Cornell University
INSDC center name
2013-05-03T12:29:26.323Z
INSDC first public
2013-05-06T14:09:51.477Z
INSDC last update
SRS418815
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418815
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CGCTTGAA,BREAD_90001;AGGC,BREAD_70173;TCAAGTT,BREAD_70303;ATGACGC,BREAD_SYNA09;ATCGGTGT,BREAD_90009;GATT,BREAD_70181;GATCATA,BREAD_70315;TATTGCA,BREAD_SYNB05;CCTACCGA,BREAD_90017;CGAA,BREAD_70191;GCATTGA,BREAD_80004;GGATATC,Blank;GGACAATA,BREAD_90025;GTCC,BREAD_70200;CAGGTAT,BREAD_80012;CCGAGCT,BREAD_P0013;AACGGAAT,BREAD_90033;ACAT,BREAD_70209;TGCAATA,BREAD_80021;TTGATAC,BREAD_P0027;TCGATGGT,BREAD_90041;GCGA,BREAD_70217;ATATCGT,BREAD_80029;CACGACT,BREAD_DM13-11;GTTCATTA,BREAD_90049;TGCT,BREAD_70225;AGTCTAT,BREAD_80038;ATCTAGC,BREAD_DM13-19;GAATCGAA,BREAD_90057;CCTC,BREAD_70236;GTCTGAA,BREAD_80046;TGAATTC,BREAD_DM13-36;CATGGTGT,BREAD_90065;AACA,BREAD_70247;ATCAGTT,BREAD_80057;CGGCTCA,BREAD_DM13-50;TGGCTATT,BREAD_90072;CTGT,BREAD_70256;CAGTTGA,BREAD_80067;GGTACAC,BREAD_DM13-75;ACCACCGT,BREAD_90080;TAAC,BREAD_70276;TGTGCAA,BREAD_80079;AATGTCT,BREAD_2751;CTATGTAA,BREAD_90088;CTCGA,BREAD_70285;CGACAGT,BREAD_SYNA02;TCATGAC,BREAD_2759;AACGAGTA,BREAD_90002;ACCGT,BREAD_70174;ACGTGTA,BREAD_70304;TTCGGAC,BREAD_SYNA10;CCGACCAT,BREAD_90010;CGTCA,BREAD_70182;GATGCAT,BREAD_70316;GCTTAGC,BREAD_SYNB06;TGTCTTAA,BREAD_90018;TCGCA,BREAD_70192;CTAATGT,BREAD_80005;ACTGCCA,BREAD_P0001;GTATACTA,BREAD_90026;CGCAT,BREAD_70201;GTCGATA,BREAD_80013;TAGTACT,BREAD_P0014;TGTGCAGT,BREAD_90034;GCACT,BREAD_70210;TATACGT,BREAD_80022;GACACTC,BREAD_P0028;ATGCTGGT,BREAD_90042;AGCTA,BREAD_70218;GCGTAAT,BREAD_80031;CGAGTAC,BREAD_DM13-12;GCAAGTAA,BREAD_90050;CAGCT,BREAD_70226;AGCGTTA,BREAD_80039;ATATGTC,BREAD_DM13-20;CAGGAATA,BREAD_90058;TCAGC,BREAD_70238;ATCCGGA,BREAD_80047;TGGACCT,BREAD_DM13-37;GTCTGGAT,BREAD_90066;CATGC,BREAD_70249;TCAGTAT,BREAD_80058;CATATGC,BREAD_DM13-51;CACCACGT,BREAD_90073;GCTAC,BREAD_70257;CAATGTT,BREAD_80068;TTCGCCA,BREAD_GS2360;TCATTGTA,BREAD_90081;CTGAC,BREAD_70278;GTTACGA,BREAD_80080;AGTTACT,BREAD_2752;GGTTCATT,BREAD_90089;GACTC,BREAD_70286;TGCATAT,BREAD_SYNA03;GTGCCAC,BREAD_2760;AAGATCGA,BREAD_90003;ACGTC,BREAD_70175;CAGCGTA,BREAD_70306;ACCGGTC,BREAD_SYNA11;CGAAGAAT,BREAD_90011;CGATC,BREAD_70184;AGTTCGA,BREAD_70317;CGGTAGC,BREAD_SYNB07;TCTGATTA,BREAD_90019;ATGCGT,BREAD_70194;GCTAATT,BREAD_80006;GCAGTTC,BREAD_P0003;ATCTCTGA,BREAD_90027;TCCAGT,BREAD_70202;ACGCTGA,BREAD_80014;TATAGTC,BREAD_P0015;AAGCAGAT,BREAD_90035;GCTTGA,BREAD_70211;TAAGCTT,BREAD_80023;ACTCCGC,BREAD_P0029;TGCGGATT,BREAD_90043;TCCGTA,BREAD_70219;CTTAGAT,BREAD_80032;GTATTAC,BREAD_DM13-13;CTCCTCGA,BREAD_90051;TCGGAT,BREAD_70227;TGATACA,BREAD_80040;TGAGCGC,BREAD_DM13-25;GGTACTAT,BREAD_90059;GTCTTA,BREAD_70239;ACCGAGT,BREAD_80048;GAGTCGC,BREAD_DM13-39;ACAGGATA,Blank;CGGAGT,BREAD_70250;GTACTTA,BREAD_80059;ATTGATC,BREAD_DM13-56;GATCTGGT,BREAD_90074;CGTCTA,BREAD_70258;ATGTCAA,BREAD_80069;TCCACGC,BREAD_DM13-76;CTGAAGAA,BREAD_90082;CACGTT,BREAD_70279;CACAGGT,BREAD_80081;GTTATTC,BREAD_2753;TCCGCCAA,BREAD_90090;GTTAGC,BREAD_70288;GGTGGCA,BREAD_SYNA04;ATGCACC,BREAD_2761;ATATTCGT,BREAD_90004;AGCATT,BREAD_70176;CTGAATT,BREAD_70310;TATGTAC,BREAD_SYNA12;CGGTGATT,BREAD_90012;CTCCGA,BREAD_70185;TCGTTAA,BREAD_70318;AGACAAGT,BREAD_SYNB08;TATGCTGA,BREAD_90020;TTGGCA,BREAD_70195;TGATCAT,BREAD_80007;GGCCGAGT,BREAD_P0005;GAACAGTT,BREAD_90028;CCACGT,BREAD_70203;CGTCGGA,BREAD_80015;AACAAGGT,BREAD_P0016;ACGATTAA,BREAD_90036;GATGTC,BREAD_70212;GACTATT,BREAD_80024;TAACGAGA,BREAD_DM13-1;GGTTACGT,BREAD_90044;TGTTAC,BREAD_70220;TAGGTCA,BREAD_80033;ATACAGGA,BREAD_DM13-14;TTACGGTA,BREAD_90052;CAGTTA,BREAD_70229;GCAACGT,BREAD_80041;CACAGAGT,BREAD_DM13-26;CACGCCAT,BREAD_90060;GCCTAT,BREAD_70240;ACTTGAT,BREAD_80051;CGGCAGGT,BREAD_DM13-40;TCGAGATA,BREAD_90067;AGTGGC,BREAD_70251;TCTGATA,BREAD_80060;GCGCGTGA,BREAD_DM13-66;AGAACTGA,BREAD_90075;TGACCT,BREAD_70260;ATAGTCA,BREAD_80071;ACAATGGA,BREAD_DM13-77;GTTCTAAT,BREAD_90083;TTGCAC,BREAD_70280;TAGCCAT,BREAD_80082;ACAAGAGT,BREAD_2754;CCTTAGAA,BREAD_90091;CTAGCT,BREAD_70289;AGGAGTC,BREAD_SYNA05;GAACATGA,BREAD_2762;GACTGTGT,BREAD_90005;TAGTGC,BREAD_70177;GTAGAGC,BREAD_70311;CAAGAAGT,BREAD_SYNB01;CGCGCCTA,BREAD_90013;GTTCCA,BREAD_70186;GACCTAT,BREAD_70319;GTCATGGT,BREAD_SYNB09;TTGCATAT,BREAD_90021;TGAATC,BREAD_70196;CATTAGT,BREAD_80008;AACAGTGA,BREAD_P0006;GCTATAGA,BREAD_90029;CGCCAT,BREAD_70204;ATTAGCA,BREAD_80016;GTGCAAGA,BREAD_P0023;ACAGCCTT,BREAD_90037;ATCGTC,BREAD_70213;GAATCTA,BREAD_80025;CAATAGGA,BREAD_DM13-3;CTGTGGTA,BREAD_90045;GTCACT,BREAD_70221;TGTCATT,BREAD_80034;TGCAGTGT,BREAD_DM13-15;TGCTTAAT,BREAD_90053;CATCGC,BREAD_70230;GCCAGAT,BREAD_80042;AGGCTAGA,BREAD_DM13-30;AATGACGA,BREAD_90061;AGGTCT,BREAD_70241;CCAGGTA,BREAD_80052;CTAGTGGT,BREAD_DM13-42;AGAACGAT,BREAD_90068;CCTGCA,BREAD_70252;TGGCAAC,BREAD_80061;GCTAGTGT,BREAD_DM13-69;GTGCGATT,BREAD_90076;GTACTC,BREAD_70265;ATGATCT,BREAD_80073;GCTGCGGA,BREAD_GS2363;CTAATTGA,BREAD_90084;ACCTGC,BREAD_70282;CATGTTA,BREAD_80084;TCGCAAGT,BREAD_2755;TAGCAGTA,BREAD_90180;CTTGAC,BREAD_70290;TGTAAGC,Blank;CGATGTGT,BREAD_2763;TCCGATAT,BREAD_2772;ACCGCT,BREAD_70178;ACGGCAT,BREAD_70312;AACGTAGA,BREAD_SYNB02;GCCTCCGA,BREAD_90014;GCTCAC,BREAD_70187;TTCTTGA,BREAD_80001;CTCACGGA,BREAD_SYNB10;AGTCGTGT,BREAD_90022;CTATGC,BREAD_70197;GGACCTT,BREAD_80009;TAGCGTGT,BREAD_P0007;CATGTATT,BREAD_90030;CAGCCT,BREAD_70205;GTGTACA,BREAD_80018;ACGTAAGA,BREAD_P0024;TGAAGCAA,BREAD_90038;GCCATC,BREAD_70214;TAGCGGC,BREAD_80026;CGTATGGT,BREAD_DM13-5;GCATTGGT,BREAD_90046;CGCTCA,BREAD_70222;CGCTTAA,BREAD_80035;GTACGTGT,BREAD_DM13-16;AAGCGATA,BREAD_90054;ACGCTC,BREAD_70231;GATAGCT,BREAD_80043;TTCGAAGA,BREAD_DM13-31;GTCAATAT,BREAD_90062;CTGATC,BREAD_70243;AGAGCCT,BREAD_80053;AATACGGA,BREAD_DM13-44;CGGCCGTA,BREAD_90069;CCAGTC,BREAD_70253;TACGAGC,BREAD_80062;TGACTGGT,BREAD_DM13-71;TTAGTCGA,BREAD_90077;TACGCC,BREAD_70267;TTGACTA,BREAD_80076;GCGGATGT,BREAD_DM13-79;GACTCAAT,BREAD_90085;CCGTAC,BREAD_70283;CGCCGAT,BREAD_80087;CATTGAGA,BREAD_2756;ACTAGGAA,BREAD_100116;TCGACC,BREAD_70295;AATTGGC,BREAD_SYNA06;GTAACAGA,BREAD_2764;CGCAACTT,BREAD_90007;GCATCC,BREAD_2771;ATACTGC,BREAD_70313;AGCTTGGT,BREAD_SYNB03;TCGGTTGA,BREAD_90015;CGTACC,BREAD_70189;GCGGCTA,BREAD_80002;ACAGATGA,BREAD_SYNB11;AATTCTGT,BREAD_90023;ATTCAGT,BREAD_70198;CGTTATA,BREAD_80010;CAGTTGGT,BREAD_P0011;CTAGAGTA,BREAD_90031;TATCTGA,BREAD_70206;TTAGACT,BREAD_80019;TGCAAGAA,BREAD_P0025;GCGCGCAT,BREAD_90039;TTCAAGT,BREAD_70215;AGGTTAC,BREAD_80027;ACTCGAGA,BREAD_DM13-6;CGATTAGA,BREAD_90047;GAGCAGT,BREAD_70223;GGCAACT,BREAD_80036;GGAGCTGT,BREAD_DM13-17;ATTCAGTT,BREAD_90055;TCTAGGA,BREAD_70232;TCACCGA,BREAD_80044;CTGAGTGT,BREAD_DM13-33;TTGACAAT,BREAD_90063;ACACGGT,BREAD_70244;AAGGTTC,BREAD_80054;GATCAGAA,BREAD_DM13-45;TACGTTAA,BREAD_90070;GACGTGA,BREAD_70254;CTAGCAT,BREAD_80064;TGCATAGA,BREAD_GS2357;AGATACGA,BREAD_90078;TCATAGT,BREAD_70273;AGCTGCA,BREAD_80077;GAACGAAT,BREAD_DM13-80;GCTGGATT,BREAD_90086;TTACGAT,Blank;AGTACTT,BREAD_80088;TTGGCGGA,BREAD_2757;GACACCTT,BREAD_100117;GGCTAGA,BREAD_70297;TAATTGC,BREAD_SYNA07;CGCCGCAT,BREAD_2765;CCGCCTAA,BREAD_90008;AATCGTT,BREAD_70262;GCTGGAC,BREAD_70314;ACGTGTGT,BREAD_SYNB04;TTCTTGGA,BREAD_90016;CTATGGA,BREAD_70190;GTCATCA,BREAD_80003;CAAGTGAA,BREAD_SYNB12;CAACGCTT,BREAD_90024;TACGGTA,BREAD_70199;CAGTGAC,BREAD_80011;GTTAACGA,BREAD_P0012;AGCAGATA,BREAD_90032;ACTATGT,BREAD_70208;GCACACT,BREAD_80020;TCGTGGAT,BREAD_P0026;TCTTAGGT,BREAD_90040;CGTGAAT,BREAD_70216;AAGTCTT,BREAD_80028;AGCGATAA,BREAD_DM13-10;GTGGCTAT,BREAD_90048;TTGCAGA,BREAD_70224;TGTATCA,BREAD_80037;CCACCAGT,BREAD_DM13-18;AGACTGAA,BREAD_90056;AACTTGT,BREAD_70233;CTGGAAC,BREAD_80045;GGCGTGTA,BREAD_DM13-35;CATAATGA,BREAD_90064;TGACGTA,BREAD_70246;ATTCGAC,BREAD_80055;AAGACAGT,BREAD_DM13-46;GTGTCAGT,BREAD_90071;GCTATAA,BREAD_70255;CAAGATC,BREAD_80065;TTGTGCGA,BREAD_DM13-74;AGTGGCTT,BREAD_90079;ATCGTAT,BREAD_70274;TCGCGCA,BREAD_80078;GAAGACAT,BREAD_DM13-81;CCACTGCA,BREAD_90087;TACTGAT,BREAD_70284;AGTGTGC,BREAD_SYNA01;TGTCAAGA,BREAD_2758;TACAGGAT,BREAD_2773;CTTGAGA,BREAD_70301;GAATTCT,BREAD_SYNA08;GCGAGGTT,BREAD_2766;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title