SAMN02086274
External Id
Cornell University
INSDC center name
2013-04-30T11:29:05.900Z
INSDC first public
2013-04-30T21:38:20.993Z
INSDC last update
SRS417493
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417493
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;CTCC,PI639939;TGCA,PI561606;ACTA,Ames27085;CAGA,Ames27072;AACT,PI595565;GCGT,PI614819;TGCGA,PI595560;CGAT,PI257508;CGCTT,PI257507;TCACC,PI600959;CTAGC,PI433485;ACAAA,PI601430;TTCTC,PI550905;AGCCC,Ames27088;GTATT,PI595530;CTGTA,PI550920;ACCGT,PI506243;GTAA,Ames27071;GGTTGT,PI595542;CCAGCT,PI587125;TTCAGA,PI550541;TAGGAA,Ames27104;GCTCTA,PI607521;CCACAA,PI607522;GCTTA,PI635139;CTTCCA,PI595528;GAGATA,Ames27102;ATGCCT,PI595564;TATTTTT,PI635127;CTTGCTT,PI641061;ATGAAAC,Ames27258;AAAAGTT,PI369446;GAATTCA,Ames27034;GAACTTC,PI607519;GGACCTA,Ames28929;GTCGATT,PI257511;AACGCCT,PI550903;AATATGC,PI641259;ACGACTAC,Ames27080;GGTGT,blank;TAGCATGC,PI635131;AGTGGA,PI635122;TAGGCCAT,PI635126;TGCAAGGA,NSL32734;TGGTACGT,PI550490;TCTCAGTC,PI369443;CCGGATAT,PI369437;CGCCTTAT,Ames20190;AGGC,SA24;GATC,PI641258;TCAC,PI550913;AGGAT,PI635132;ATTGA,B73;CATCT,PI641247;CCTAC,PI641076;GAGGA,CML121;GGAAC,PI601005;GTCAA,PI369439;TAATA,PI257513;TACAT,PI601466;TCGTT,PI641257;ACCTAA,PI561605;ATATGT,PI561618;ATCGTA,PI639938;CATCGT,PI639941;CGCGGT,PI506250;CTATTA,PI406129;GCCAGT,PI550568;GGAAGA,PI538229;GTACTT,PI607524;GTTGAA,PI535926;TAACGA,PI601026;TGGCTA,CML373;ACGTGTT,Ames2523;ATTAATT,Ames22760;ATTGGAT,PI633840;CATAAGT,PI595557;CGCTGAT,Ames27086;CGGTAGA,Ames20116;CTACGGA,PI538238;GCGGAAT,PI535900;TAGCGGA,PI415084;TCGAAGA,PI535927;TCTGTGA,NSL32726;TGCTGGA,PI595541;AACCGAGA,PI550904;ACAGGGAA,PI595541;ACGTGGTA,PI595536;CCATGGGT,PI540748;CGCGGAGA,PI641252;CGTGTGGT,Ames27043;GCTGTGGA,Ames27039;GGATTGGT,PI340819;GTGAGGGT,CML357;TATCGGGA,NSL32723;TTCCTGGA,Ames19316;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title