SAMN02086288
External Id
Cornell University
INSDC center name
2013-04-30T11:28:59.077Z
INSDC first public
2013-04-30T22:00:13.463Z
INSDC last update
SRS417507
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417507
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;CTCC,CML456;TGCA,Ames28927;ACTA,CML363;CAGA,Ames19327;AACT,Ames20118;GCGT,Ames19003;TGCGA,CML335;CGAT,PI406112;CGCTT,CML242;TCACC,PI550574;CTAGC,Ames10249;ACAAA,CML494;TTCTC,CML327;AGCCC,CML481;GTATT,CML491;CTGTA,Ames12729;ACCGT,blank;GTAA,PI641243;GGTTGT,CML424;CCAGCT,SC343;TTCAGA,PI596627;TAGGAA,CML389;GCTCTA,SC401;CCACAA,PI543916;GCTTA,CML319;CTTCCA,Ames10258;GAGATA,Ames27165;ATGCCT,Ames10247;TATTTTT,Ames27175;CTTGCTT,Ames23399;ATGAAAC,CML365;AAAAGTT,NSL53083;GAATTCA,CML394;GAACTTC,CML485;GGACCTA,Ames26253;GTCGATT,CML451;AACGCCT,CML139;AATATGC,Ames10257;ACGACTAC,Ames10276;GGTGT,PI221734;TAGCATGC,CML226;AGTGGA,CML484;TAGGCCAT,PI186184;TGCAAGGA,PI550516;TGGTACGT,Ames27148;TCTCAGTC,PI561534;CCGGATAT,CML206;CGCCTTAT,Ames19004;AGGC,CML317;GATC,CML427;TCAC,Ames10274;AGGAT,PI186195;ATTGA,Ames27189;CATCT,CML176;CCTAC,PI550546;GAGGA,Ames24730;GGAAC,Ames10254;GTCAA,SC285;TAATA,CML380;TACAT,CML184;TCGTT,SA24;ACCTAA,PI587148;ATATGT,CML195;ATCGTA,SC235R3;CATCGT,PI558533;CGCGGT,Ames27181;CTATTA,CML388;GCCAGT,CML433;GGAAGA,PI221735;GTACTT,Ames10272;GTTGAA,PI596354;TAACGA,Ames10259;TGGCTA,CML313;ACGTGTT,CML255;ATTAATT,PI406110;ATTGGAT,B73;CATAAGT,Ames27175;CGCTGAT,Ames12735;CGGTAGA,Ames10269;CTACGGA,CML198;GCGGAAT,Ames27164;TAGCGGA,SAN349a-1;TCGAAGA,CML438;TCTGTGA,SC229;TGCTGGA,CML219;AACCGAGA,CML449;ACAGGGAA,PI561526;ACGTGGTA,PI561533;CCATGGGT,CML201;CGCGGAGA,CML344;CGTGTGGT,NSL53094;GCTGTGGA,NSL30072;GGATTGGT,CML493;GTGAGGGT,Ames10252;TATCGGGA,CML347;TTCCTGGA,PI550548;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title