SAMN02086270
External Id
Cornell University
INSDC center name
2013-04-30T11:29:07.717Z
INSDC first public
2013-04-30T21:27:21.083Z
INSDC last update
SRS417489
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417489
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;CTCC,Ames26789;TGCA,blank;ACTA,NSL29287;CAGA,SC353;AACT,NSL75980;GCGT,NSL30053;TGCGA,PI601316;CGAT,Ames27168;CGCTT,Ames10267;TCACC,SC76;CTAGC,CML378;ACAAA,CML337;TTCTC,NSL30866;AGCCC,Ames22045;GTATT,Ames28412;CTGTA,PI587132;ACCGT,PI601037;GTAA,PI221820;GGTTGT,CML495;CCAGCT,SC277;TTCAGA,Ames25218;TAGGAA,Ames25182;GCTCTA,CML78;CCACAA,CML315;GCTTA,SA24;CTTCCA,PI531511;GAGATA,PI634215;ATGCCT,PI596500;TATTTTT,PI601191;CTTGCTT,PI601745;ATGAAAC,NSL8579;AAAAGTT,CML500;GAATTCA,SC54;GAACTTC,NSL174429;GGACCTA,Mp07:153;GTCGATT,Ames27113;AACGCCT,PI608766;AATATGC,PI584528;ACGACTAC,NSL29303;GGTGT,NSL75971;TAGCATGC,PI558532;AGTGGA,PI550473;TAGGCCAT,Ames26747;TGCAAGGA,CML379;TGGTACGT,Ames27176;TCTCAGTC,PI221737;CCGGATAT,CML308;CGCCTTAT,SC276Q2;AGGC,Ames2329;GATC,Ames22748;TCAC,PI648426;AGGAT,Ames23503;ATTGA,Ames27176;CATCT,PI340858;CCTAC,PI601684;GAGGA,CML116;GGAAC,Ames27173;GTCAA,CML496;TAATA,CML320;TACAT,CML486;TCGTT,PI550464;ACCTAA,PI340813;ATATGT,Ames19319;ATCGTA,NSL29304;CATCGT,Ames29024;CGCGGT,PI648430;CTATTA,CML366;GCCAGT,CML490;GGAAGA,PI548792;GTACTT,Ames27165;GTTGAA,CML339;TAACGA,CML214;TGGCTA,NSL197106;ACGTGTT,Ames26795;ATTAATT,Ames26753;ATTGGAT,PI542957;CATAAGT,Ames26784;CGCTGAT,PI601783;CGGTAGA,B73;CTACGGA,PI303941;GCGGAAT,CML312;TAGCGGA,Ames27173;TCGAAGA,Ki11;TCTGTGA,CML227;TGCTGGA,PI186230;AACCGAGA,Ames22050;ACAGGGAA,NSL30053;ACGTGGTA,Ames29003;CCATGGGT,Ames29022;CGCGGAGA,PI340846;CGTGTGGT,CML213;GCTGTGGA,CML289;GGATTGGT,Ames10271;GTGAGGGT,CML395;TATCGGGA,CML204;TTCCTGGA,Ames27124;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title