SAMN02116948
External Id
Cornell University
INSDC center name
2013-05-03T12:23:51.307Z
INSDC first public
2013-05-05T23:00:16.577Z
INSDC last update
SRS418522
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418522
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,SW64.04;TGCA,SW809.02;ACTA,SW129.08;CAGA,SW805.03;AACT,SW116.01;GCGT,SW51.01;TGCGA,SW124.03;CGAT,LP2.172;CGCTT,LP2.061;TCACC,LP1.021;CTAGC,LP1.151;ACAAA,LP1.038;TTCTC,Dacotah.07;AGCCC,SW793.03;GTATT,KY1625.04;CTGTA,SW799.08;ACCGT,ECS-2.04;GTAA,SW112.03;GGTTGT,SW781.04;CCAGCT,LP1.149;TTCAGA,LP2.033;TAGGAA,LP2.159;GCTCTA,LP2.067;CCACAA,LP1.159;GCTTA,SW129.03;CTTCCA,SW128.04;GAGATA,SW788.02;ATGCCT,Carthage.04;TATTTTT,SW40.09;CTTGCTT,SW46.04;ATGAAAC,SW793.01;AAAAGTT,LP1.125;GAATTCA,LP2.045;GAACTTC,LP1.027;GGACCTA,LP2.060;GTCGATT,LP1.036;AACGCCT,SW46.06;AATATGC,Kanlow.10;ACGACTAC,SW31.07;GGTGT,SW806.03;TAGCATGC,SW802.02;AGTGGA,SW110.03;TAGGCCAT,LP2.164;TGCAAGGA,LP1.142;TGGTACGT,LP2.075;TCTCAGTC,LP2.058;CCGGATAT,LP1.143;CGCCTTAT,LP2.146;AGGC,SW46.10;GATC,SW781.08;TCAC,WS4U.05;AGGAT,Cave-in-Rock.08;ATTGA,SW782.10;CATCT,Timber.05;CCTAC,LP2.177;GAGGA,LP2.027;GGAAC,LP2.029;GTCAA,LP2.048;TAATA,LP2.032;TACAT,LP2.148;TCGTT,Dacotah.04;ACCTAA,SW102.01;ATATGT,SW122.03;ATCGTA,Blackwell.04;CATCGT,ECS-1.03;CGCGGT,High Tide.08;CTATTA,LP1.016;GCCAGT,LP1.155;GGAAGA,LP1.137;GTACTT,LP2.050;GTTGAA,LP1.144;TAACGA,LP2.152;TGGCTA,SW127.07;ACGTGTT,Blank;ATTAATT,SW124.07;ATTGGAT,SW786.10;CATAAGT,ECS-1.06;CGCTGAT,SW797.09;CGGTAGA,LP2.142;CTACGGA,LP2.073;GCGGAAT,LP1.039;TAGCGGA,LP2.085;TCGAAGA,LP1.132;TCTGTGA,LP2.103;TGCTGGA,SW805.07;AACCGAGA,SW808.09;ACAGGGAA,SW806.07;ACGTGGTA,SW63.06;CCATGGGT,SW49.04;CGCGGAGA,Pathfinder.10;CGTGTGGT,LP1.023;GCTGTGGA,LP2.053;GGATTGGT,LP1.050;GTGAGGGT,LP2.021;TATCGGGA,LP1.134;TTCCTGGA,LP1.044;)
description
Panicum virgatum
http://purl.obolibrary.org/obo/NCBITaxon_38727
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Panicum virgatum
title