SAMN02215256
External Id
USDA/ARS/NADC/FSEPRU
INSDC center name
2013-11-16T00:00:00Z
INSDC first public
2019-07-21T02:04:47.748Z
INSDC last update
SRS455242
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMS.me.host-associated.5.0
NCBI submission package
SRS455242
SRA accession
swine intestinal tract
biome
2010-01-12
collection date
Keywords: GSC:MIxS;MIMS:5.0
description
MIGS/MIMS/MIMARKS.host-associated
env package
USA: Ames, Iowa
geo loc name
92 days old
host age
intestinal contents
host body product
pig
host common name
TechStart 17-25 (Kent Feeds, Muscatine, IA) containing ASP250 (chlortetracycline 100 g/ton, sulfamethazine 100 g/ton, penicillin 50 g/ton) ad libitum until euthanization (15 continuous days)
host diet
not fasted before euthanasia
host last meal
grower pig
host life stage
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
9825
host taxid
offspring of sow C
host_family_relationship
ambient
host_growth_cond
ileum
http://purl.obolibrary.org/obo/UBERON_0002116
host_tissue_sampled
metagenome
investigation type
swine
label
42°02?05?N 93°37?12?W
lat lon
contents of the distal ileum, proximal to the ileal/cecal junction
material
pig metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1176744
organism
medicated (15 continuous days)
perturbation
Swine gut microbial ecology along the gut transect
project name
bead beating 5 g of gut contents or fecal material for bulk DNA extraction (kit by MoBio)
samp mat process
up to 5 grams feces/gut contents
samp_size
1 to 6 months
samp_store_dur
-20 degrees Celsius
http://purl.obolibrary.org/obo/UO_0000027
samp_store_temp
Pig 65
specific host
MIMS Environmental/Metagenome sample from Sus scrofa domesticus
title