SAMN02116469
External Id
Cornell University
INSDC center name
2013-05-03T12:29:25.067Z
INSDC first public
2013-05-06T14:10:07.670Z
INSDC last update
SRS418819
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418819
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (AGGC,MARS-WEMA_270319;TCAAGTT,MARS-WEMA_270414;ATGACGC,MARS-WEMA_270509;CGCTTGAA,MARS-WEMA_270604;GATT,MARS-WEMA_270327;GATCATA,MARS-WEMA_270422;TATTGCA,MARS-WEMA_270517;ATCGGTGT,MARS-WEMA_270612;CGAA,MARS-WEMA_270335;GCATTGA,Blank;GGATATC,MARS-WEMA_270525;CCTACCGA,MARS-WEMA_270620;GTCC,MARS-WEMA_270343;CAGGTAT,MARS-WEMA_270437;CCGAGCT,Blank;GGACAATA,MARS-WEMA_270628;ACAT,MARS-WEMA_270351;TGCAATA,MARS-WEMA_270445;TTGATAC,MARS-WEMA_270540;AACGGAAT,MARS-WEMA_270636;GCGA,MARS-WEMA_270359;ATATCGT,MARS-WEMA_270453;CACGACT,MARS-WEMA_270548;TCGATGGT,Blank;TGCT,MARS-WEMA_270367;AGTCTAT,MARS-WEMA_270461;ATCTAGC,MARS-WEMA_270556;GTTCATTA,MARS-WEMA_270651;CCTC,MARS-WEMA_270375;GTCTGAA,MARS-WEMA_270469;TGAATTC,MARS-WEMA_270564;GAATCGAA,MARS-WEMA_270659;AACA,MARS-WEMA_270383;ATCAGTT,MARS-WEMA_270477;CGGCTCA,MARS-WEMA_270572;CATGGTGT,MARS-WEMA_270667;CTGT,MARS-WEMA_270391;CAGTTGA,MARS-WEMA_270485;GGTACAC,MARS-WEMA_270580;TGGCTATT,MARS-WEMA_270675;TAAC,MARS-WEMA_270399;TGTGCAA,MARS-WEMA_270493;AATGTCT,MARS-WEMA_270588;ACCACCGT,MARS-WEMA_270683;CTCGA,Blank;CGACAGT,MARS-WEMA_270501;TCATGAC,MARS-WEMA_270596;CTATGTAA,MARS-WEMA_270691;ACCGT,MARS-WEMA_270320;ACGTGTA,MARS-WEMA_270415;TTCGGAC,MARS-WEMA_270510;AACGAGTA,MARS-WEMA_270605;CGTCA,MARS-WEMA_270328;GATGCAT,MARS-WEMA_270423;GCTTAGC,MARS-WEMA_270518;CCGACCAT,MARS-WEMA_270613;TCGCA,MARS-WEMA_270336;CTAATGT,MARS-WEMA_270430;ACTGCCA,MARS-WEMA_270526;TGTCTTAA,MARS-WEMA_270621;CGCAT,MARS-WEMA_270344;GTCGATA,MARS-WEMA_270438;TAGTACT,MARS-WEMA_270533;GTATACTA,MARS-WEMA_270629;GCACT,MARS-WEMA_270352;TATACGT,MARS-WEMA_270446;GACACTC,MARS-WEMA_270541;TGTGCAGT,MARS-WEMA_270637;AGCTA,MARS-WEMA_270360;GCGTAAT,MARS-WEMA_270454;CGAGTAC,MARS-WEMA_270549;ATGCTGGT,MARS-WEMA_270644;CAGCT,MARS-WEMA_270368;AGCGTTA,MARS-WEMA_270462;ATATGTC,MARS-WEMA_270557;GCAAGTAA,MARS-WEMA_270652;TCAGC,MARS-WEMA_270376;ATCCGGA,MARS-WEMA_270470;TGGACCT,MARS-WEMA_270565;CAGGAATA,MARS-WEMA_270660;CATGC,MARS-WEMA_270384;TCAGTAT,MARS-WEMA_270478;CATATGC,MARS-WEMA_270573;GTCTGGAT,MARS-WEMA_270668;GCTAC,MARS-WEMA_270392;CAATGTT,MARS-WEMA_270486;TTCGCCA,MARS-WEMA_270581;CACCACGT,MARS-WEMA_270676;CTGAC,MARS-WEMA_270400;GTTACGA,MARS-WEMA_270494;AGTTACT,MARS-WEMA_270589;TCATTGTA,MARS-WEMA_270684;GACTC,MARS-WEMA_270407;TGCATAT,MARS-WEMA_270502;GTGCCAC,MARS-WEMA_270597;GGTTCATT,MARS-WEMA_270692;ACGTC,MARS-WEMA_270321;CAGCGTA,MARS-WEMA_270416;ACCGGTC,MARS-WEMA_270511;AAGATCGA,MARS-WEMA_270606;CGATC,MARS-WEMA_270329;AGTTCGA,MARS-WEMA_270424;CGGTAGC,MARS-WEMA_270519;CGAAGAAT,MARS-WEMA_270614;ATGCGT,MARS-WEMA_270337;GCTAATT,MARS-WEMA_270431;GCAGTTC,MARS-WEMA_270527;TCTGATTA,MARS-WEMA_270622;TCCAGT,MARS-WEMA_270345;ACGCTGA,MARS-WEMA_270439;TATAGTC,MARS-WEMA_270534;ATCTCTGA,MARS-WEMA_270630;GCTTGA,MARS-WEMA_270353;TAAGCTT,MARS-WEMA_270447;ACTCCGC,MARS-WEMA_270542;AAGCAGAT,MARS-WEMA_270638;TCCGTA,MARS-WEMA_270361;CTTAGAT,MARS-WEMA_270455;GTATTAC,MARS-WEMA_270550;TGCGGATT,MARS-WEMA_270645;TCGGAT,MARS-WEMA_270369;TGATACA,MARS-WEMA_270463;TGAGCGC,MARS-WEMA_270558;CTCCTCGA,MARS-WEMA_270653;GTCTTA,MARS-WEMA_270377;ACCGAGT,MARS-WEMA_270471;GAGTCGC,MARS-WEMA_270566;GGTACTAT,MARS-WEMA_270661;CGGAGT,MARS-WEMA_270385;GTACTTA,MARS-WEMA_270479;ATTGATC,MARS-WEMA_270574;ACAGGATA,MARS-WEMA_270669;CGTCTA,MARS-WEMA_270393;ATGTCAA,MARS-WEMA_270487;TCCACGC,MARS-WEMA_270582;GATCTGGT,MARS-WEMA_270677;CACGTT,MARS-WEMA_270401;CACAGGT,MARS-WEMA_270495;GTTATTC,MARS-WEMA_270590;CTGAAGAA,MARS-WEMA_270685;GTTAGC,MARS-WEMA_270408;GGTGGCA,MARS-WEMA_270503;ATGCACC,MARS-WEMA_270598;TCCGCCAA,MARS-WEMA_270693;AGCATT,MARS-WEMA_270322;CTGAATT,MARS-WEMA_270417;TATGTAC,MARS-WEMA_270512;ATATTCGT,MARS-WEMA_270607;CTCCGA,MARS-WEMA_270330;TCGTTAA,MARS-WEMA_270425;AGACAAGT,MARS-WEMA_270520;CGGTGATT,MARS-WEMA_270615;TTGGCA,MARS-WEMA_270338;TGATCAT,MARS-WEMA_270432;GGCCGAGT,MARS-WEMA_270528;TATGCTGA,MARS-WEMA_270623;CCACGT,MARS-WEMA_270346;CGTCGGA,MARS-WEMA_270440;AACAAGGT,MARS-WEMA_270535;GAACAGTT,MARS-WEMA_270631;GATGTC,MARS-WEMA_270354;GACTATT,MARS-WEMA_270448;TAACGAGA,MARS-WEMA_270543;ACGATTAA,MARS-WEMA_270639;TGTTAC,MARS-WEMA_270362;TAGGTCA,MARS-WEMA_270456;ATACAGGA,MARS-WEMA_270551;GGTTACGT,MARS-WEMA_270646;CAGTTA,MARS-WEMA_270370;GCAACGT,MARS-WEMA_270464;CACAGAGT,MARS-WEMA_270559;TTACGGTA,MARS-WEMA_270654;GCCTAT,MARS-WEMA_270378;ACTTGAT,MARS-WEMA_270472;CGGCAGGT,MARS-WEMA_270567;CACGCCAT,MARS-WEMA_270662;AGTGGC,MARS-WEMA_270386;TCTGATA,MARS-WEMA_270480;GCGCGTGA,MARS-WEMA_270575;TCGAGATA,MARS-WEMA_270670;TGACCT,MARS-WEMA_270394;ATAGTCA,MARS-WEMA_270488;ACAATGGA,MARS-WEMA_270583;AGAACTGA,MARS-WEMA_270678;TTGCAC,MARS-WEMA_270402;TAGCCAT,MARS-WEMA_270496;ACAAGAGT,MARS-WEMA_270591;GTTCTAAT,MARS-WEMA_270686;CTAGCT,MARS-WEMA_270409;AGGAGTC,MARS-WEMA_270504;GAACATGA,MARS-WEMA_270599;CCTTAGAA,MARS-WEMA_270694;TAGTGC,MARS-WEMA_270323;GTAGAGC,MARS-WEMA_270418;CAAGAAGT,MARS-WEMA_270513;GACTGTGT,MARS-WEMA_270608;GTTCCA,MARS-WEMA_270331;GACCTAT,MARS-WEMA_270426;GTCATGGT,MARS-WEMA_270521;CGCGCCTA,MARS-WEMA_270616;TGAATC,MARS-WEMA_270339;CATTAGT,MARS-WEMA_270433;AACAGTGA,MARS-WEMA_270529;TTGCATAT,MARS-WEMA_270624;CGCCAT,MARS-WEMA_270347;ATTAGCA,MARS-WEMA_270441;GTGCAAGA,MARS-WEMA_270536;GCTATAGA,MARS-WEMA_270632;ATCGTC,MARS-WEMA_270355;GAATCTA,MARS-WEMA_270449;CAATAGGA,MARS-WEMA_270544;ACAGCCTT,MARS-WEMA_270640;GTCACT,MARS-WEMA_270363;TGTCATT,MARS-WEMA_270457;TGCAGTGT,MARS-WEMA_270552;CTGTGGTA,MARS-WEMA_270647;CATCGC,MARS-WEMA_270371;GCCAGAT,MARS-WEMA_270465;AGGCTAGA,MARS-WEMA_270560;TGCTTAAT,MARS-WEMA_270655;AGGTCT,MARS-WEMA_270379;CCAGGTA,MARS-WEMA_270473;CTAGTGGT,MARS-WEMA_270568;AATGACGA,MARS-WEMA_270663;CCTGCA,MARS-WEMA_270387;TGGCAAC,MARS-WEMA_270481;GCTAGTGT,MARS-WEMA_270576;AGAACGAT,MARS-WEMA_270671;GTACTC,MARS-WEMA_270395;ATGATCT,MARS-WEMA_270489;GCTGCGGA,MARS-WEMA_270584;GTGCGATT,MARS-WEMA_270679;ACCTGC,MARS-WEMA_270403;CATGTTA,MARS-WEMA_270497;TCGCAAGT,MARS-WEMA_270592;CTAATTGA,MARS-WEMA_270687;CTTGAC,MARS-WEMA_270410;TGTAAGC,MARS-WEMA_270505;CGATGTGT,MARS-WEMA_270600;TAGCAGTA,MARS-WEMA_270695;ACCGCT,MARS-WEMA_270324;ACGGCAT,MARS-WEMA_270419;AACGTAGA,MARS-WEMA_270514;TCCGATAT,MARS-WEMA_270609;GCTCAC,MARS-WEMA_270332;TTCTTGA,MARS-WEMA_270427;CTCACGGA,MARS-WEMA_270522;GCCTCCGA,MARS-WEMA_270617;CTATGC,MARS-WEMA_270340;GGACCTT,MARS-WEMA_270434;TAGCGTGT,MARS-WEMA_270530;AGTCGTGT,MARS-WEMA_270625;CAGCCT,MARS-WEMA_270348;GTGTACA,MARS-WEMA_270442;ACGTAAGA,MARS-WEMA_270537;CATGTATT,MARS-WEMA_270633;GCCATC,MARS-WEMA_270356;TAGCGGC,MARS-WEMA_270450;CGTATGGT,MARS-WEMA_270545;TGAAGCAA,MARS-WEMA_270641;CGCTCA,MARS-WEMA_270364;CGCTTAA,MARS-WEMA_270458;GTACGTGT,MARS-WEMA_270553;GCATTGGT,MARS-WEMA_270648;ACGCTC,MARS-WEMA_270372;GATAGCT,MARS-WEMA_270466;TTCGAAGA,MARS-WEMA_270561;AAGCGATA,MARS-WEMA_270656;CTGATC,MARS-WEMA_270380;AGAGCCT,MARS-WEMA_270474;AATACGGA,MARS-WEMA_270569;GTCAATAT,MARS-WEMA_270664;CCAGTC,MARS-WEMA_270388;TACGAGC,MARS-WEMA_270482;TGACTGGT,MARS-WEMA_270577;CGGCCGTA,MARS-WEMA_270672;TACGCC,MARS-WEMA_270396;TTGACTA,MARS-WEMA_270490;GCGGATGT,MARS-WEMA_270585;TTAGTCGA,MARS-WEMA_270680;CCGTAC,MARS-WEMA_270404;CGCCGAT,MARS-WEMA_270498;CATTGAGA,MARS-WEMA_270593;GACTCAAT,MARS-WEMA_270688;TCGACC,MARS-WEMA_270411;AATTGGC,MARS-WEMA_270506;GTAACAGA,MARS-WEMA_270601;ACTAGGAA,MARS-WEMA_270696;GCATCC,MARS-WEMA_270325;ATACTGC,MARS-WEMA_270420;AGCTTGGT,MARS-WEMA_270515;CGCAACTT,MARS-WEMA_270610;CGTACC,MARS-WEMA_270333;GCGGCTA,MARS-WEMA_270428;ACAGATGA,MARS-WEMA_270523;TCGGTTGA,MARS-WEMA_270618;ATTCAGT,MARS-WEMA_270341;CGTTATA,MARS-WEMA_270435;CAGTTGGT,MARS-WEMA_270531;AATTCTGT,MARS-WEMA_270626;TATCTGA,MARS-WEMA_270349;TTAGACT,MARS-WEMA_270443;TGCAAGAA,MARS-WEMA_270538;CTAGAGTA,MARS-WEMA_270634;TTCAAGT,MARS-WEMA_270357;AGGTTAC,MARS-WEMA_270451;ACTCGAGA,MARS-WEMA_270546;GCGCGCAT,MARS-WEMA_270642;GAGCAGT,MARS-WEMA_270365;GGCAACT,MARS-WEMA_270459;GGAGCTGT,MARS-WEMA_270554;CGATTAGA,MARS-WEMA_270649;TCTAGGA,MARS-WEMA_270373;TCACCGA,MARS-WEMA_270467;CTGAGTGT,MARS-WEMA_270562;ATTCAGTT,MARS-WEMA_270657;ACACGGT,MARS-WEMA_270381;AAGGTTC,MARS-WEMA_270475;GATCAGAA,MARS-WEMA_270570;TTGACAAT,MARS-WEMA_270665;GACGTGA,MARS-WEMA_270389;CTAGCAT,MARS-WEMA_270483;TGCATAGA,MARS-WEMA_270578;TACGTTAA,MARS-WEMA_270673;TCATAGT,MARS-WEMA_270397;AGCTGCA,MARS-WEMA_270491;GAACGAAT,MARS-WEMA_270586;AGATACGA,MARS-WEMA_270681;TTACGAT,MARS-WEMA_270405;AGTACTT,MARS-WEMA_270499;TTGGCGGA,MARS-WEMA_270594;GCTGGATT,MARS-WEMA_270689;GGCTAGA,MARS-WEMA_270412;TAATTGC,MARS-WEMA_270507;CGCCGCAT,MARS-WEMA_270602;GACACCTT,MARS-WEMA_270697;AATCGTT,MARS-WEMA_270326;GCTGGAC,MARS-WEMA_270421;ACGTGTGT,MARS-WEMA_270516;CCGCCTAA,MARS-WEMA_270611;CTATGGA,MARS-WEMA_270334;GTCATCA,MARS-WEMA_270429;CAAGTGAA,MARS-WEMA_270524;TTCTTGGA,MARS-WEMA_270619;TACGGTA,MARS-WEMA_270342;CAGTGAC,MARS-WEMA_270436;GTTAACGA,MARS-WEMA_270532;CAACGCTT,MARS-WEMA_270627;ACTATGT,MARS-WEMA_270350;GCACACT,MARS-WEMA_270444;TCGTGGAT,MARS-WEMA_270539;AGCAGATA,MARS-WEMA_270635;CGTGAAT,MARS-WEMA_270358;AAGTCTT,MARS-WEMA_270452;AGCGATAA,MARS-WEMA_270547;TCTTAGGT,MARS-WEMA_270643;TTGCAGA,MARS-WEMA_270366;TGTATCA,MARS-WEMA_270460;CCACCAGT,MARS-WEMA_270555;GTGGCTAT,MARS-WEMA_270650;AACTTGT,MARS-WEMA_270374;CTGGAAC,MARS-WEMA_270468;GGCGTGTA,MARS-WEMA_270563;AGACTGAA,MARS-WEMA_270658;TGACGTA,MARS-WEMA_270382;ATTCGAC,MARS-WEMA_270476;AAGACAGT,MARS-WEMA_270571;CATAATGA,MARS-WEMA_270666;GCTATAA,MARS-WEMA_270390;CAAGATC,MARS-WEMA_270484;TTGTGCGA,MARS-WEMA_270579;GTGTCAGT,MARS-WEMA_270674;ATCGTAT,MARS-WEMA_270398;TCGCGCA,MARS-WEMA_270492;GAAGACAT,MARS-WEMA_270587;AGTGGCTT,MARS-WEMA_270682;TACTGAT,MARS-WEMA_270406;AGTGTGC,MARS-WEMA_270500;TGTCAAGA,MARS-WEMA_270595;CCACTGCA,MARS-WEMA_270690;CTTGAGA,MARS-WEMA_270413;GAATTCT,MARS-WEMA_270508;GCGAGGTT,MARS-WEMA_270603;TACAGGAT,MARS-WEMA_270698;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title