SAMN02086275
External Id
Cornell University
INSDC center name
2013-04-30T11:29:05.340Z
INSDC first public
2013-04-30T21:38:21.267Z
INSDC last update
SRS417494
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417494
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;CTCC,Ames22441;TGCA,NSL32730;ACTA,PI415083;CAGA,PI535912;AACT,Ames27450;GCGT,PI550552;TGCGA,PI550565;CGAT,PI550540;CGCTT,MR22(Tuxpeno)S6;TCACC,MR06(Chapalote)S6;CTAGC,MR01(Araguito)S6;ACAAA,PI601007;TTCTC,Ames27040;AGCCC,Ames26769;GTATT,PI415079;CTGTA,PI607527;ACCGT,PI415090;GTAA,Ames22747;GGTTGT,Ames27035;CCAGCT,NSL32738;TTCAGA,GA220;TAGGAA,GE180;GCTCTA,GT154;CCACAA,Ames24723;GCTTA,PI233318;CTTCCA,PI415081;GAGATA,PI550504;ATGCCT,PI631394;TATTTTT,PI535906;CTTGCTT,PI594085;ATGAAAC,PI607521;AAAAGTT,Ames27105;GAATTCA,MP462;GAACTTC,B73;GGACCTA,Mp07:158;GTCGATT,Ames22035;AACGCCT,PI257506;AATATGC,PI535924;ACGACTAC,Ames27051;GGTGT,PI535919;TAGCATGC,PI535916;AGTGGA,NSL32728;TAGGCCAT,NSL32729;TGCAAGGA,PI340824;TGGTACGT,SA24;TCTCAGTC,MR26(Pollo)S5;CCGGATAT,PI594054;CGCCTTAT,Ames24720;AGGC,PI550553;GATC,P39;TCAC,PI550530;AGGAT,Ames27036;ATTGA,NSL30868;CATCT,PI257515;CCTAC,PI233321;GAGGA,PI587153;GGAAC,MR11(CubanFlint)S6;GTCAA,A3G-3-1-3;TAATA,MR15(PalomerodeJalisco)S6;TACAT,Ames22052;TCGTT,PI631393;ACCTAA,PI607521;ATATGT,PI550489;ATCGTA,Ames27053;CATCGT,PI535901;CGCGGT,PI546494;CTATTA,PI340818;GCCAGT,PI340817;GGAAGA,PI594079;GTACTT,GT602;GTTGAA,MR09(CravoRiogranense)S6;TAACGA,Ames23475;TGGCTA,Ames27044;ACGTGTT,Ames27048;ATTAATT,PI267164;ATTGGAT,blank;CATAAGT,PI535917;CGCTGAT,PI538237;CGGTAGA,PI415088;CTACGGA,AH83;GCGGAAT,MR13(HickoryKing);TAGCGGA,TR9-1-1-6;TCGAAGA,PI587141;TCTGTGA,Ames23444;TGCTGGA,PI257514;AACCGAGA,NSL32718;ACAGGGAA,PI550532;ACGTGGTA,Ames27107;CCATGGGT,Ames27070;CGCGGAGA,PI535923;CGTGTGGT,Ames20140;GCTGTGGA,12E;GGATTGGT,GT169A;GTGAGGGT,MR23(ZapaloteChico)S6;TATCGGGA,Ames23434;TTCCTGGA,Ames23445;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title