SAMN02086273
External Id
Cornell University
INSDC center name
2013-04-30T11:29:06.257Z
INSDC first public
2013-04-30T21:38:15.697Z
INSDC last update
SRS417492
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417492
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;CTCC,blank;TGCA,Ames27075;ACTA,Ames27083;CAGA,B73;AACT,Ames27098;GCGT,PI654048;TGCGA,PI595548;CGAT,PI595545;CGCTT,PI635124;TCACC,Ames27077;CTAGC,Ames27086;ACAAA,Ames27126;TTCTC,Ames27091;AGCCC,Ames27084;GTATT,PI561613;CTGTA,Ames22763;ACCGT,PI595549;GTAA,Ames27100;GGTTGT,PI561610;CCAGCT,PI506247;TTCAGA,Ames23923;TAGGAA,Ames27093;GCTCTA,Ames19005;CCACAA,PI550906;GCTTA,Ames27082;CTTCCA,PI641262;GAGATA,PI506256;ATGCCT,PI595561;TATTTTT,Ames27080;CTTGCTT,PI540750;ATGAAAC,PI595567;AAAAGTT,PI635140;GAATTCA,PI561607;GAACTTC,Ames27091;GGACCTA,Ames27090;GTCGATT,Ames27083;AACGCCT,PI506258;AATATGC,Ames26604;ACGACTAC,PI641255;GGTGT,PI654050;TAGCATGC,Ames27097;AGTGGA,PI639936;TAGGCCAT,Ames27128;TGCAAGGA,PI406130;TGGTACGT,PI601324;TCTCAGTC,Ames27130;CCGGATAT,PI601331;CGCCTTAT,Ames26771;AGGC,Ames27094;GATC,PI641070;TCAC,PI639945;AGGAT,PI595555;ATTGA,PI561602;CATCT,PI506246;CCTAC,PI595531;GAGGA,PI540747;GGAAC,PI506257;GTCAA,PI654049;TAATA,PI550901;TACAT,PI639930;TCGTT,PI639928;ACCTAA,PI654053;ATATGT,PI641234;ATCGTA,PI391414;CATCGT,PI595534;CGCGGT,Ames27093;CTATTA,PI595530;GCCAGT,PI641253;GGAAGA,PI561603;GTACTT,PI641254;GTTGAA,PI635136;TAACGA,Ames23924;TGGCTA,PI561614;ACGTGTT,PI587144;ATTAATT,PI595538;ATTGGAT,CML384;CATAAGT,SA24;CGCTGAT,PI506252;CGGTAGA,PI619431;CTACGGA,PI639940;GCGGAAT,Ames22766;TAGCGGA,Ames27095;TCGAAGA,PI561609;TCTGTGA,PI595542;TGCTGGA,PI550900;AACCGAGA,PI641066;ACAGGGAA,PI639948;ACGTGGTA,PI506253;CCATGGGT,PI641261;CGCGGAGA,PI641071;CGTGTGGT,CML480;GCTGTGGA,PI639947;GGATTGGT,CML270;GTGAGGGT,CML342;TATCGGGA,PI641264;TTCCTGGA,PI540741;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title