SAMN02116940
External Id
Cornell University
INSDC center name
2013-05-03T12:23:50.237Z
INSDC first public
2013-05-05T22:49:13.833Z
INSDC last update
SRS418510
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418510
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,2009;TGCA,1181;ACTA,Blank;CAGA,1219;AACT,1111;GCGT,1176;TGCGA,2122;CGAT,1165;CGCTT,1073;TCACC,1086;CTAGC,1118;ACAAA,2176;TTCTC,1175;AGCCC,1163;GTATT,1058;CTGTA,1204;ACCGT,1053;GTAA,1167;GGTTGT,1096;CCAGCT,2010;TTCAGA,1162;TAGGAA,1189;GCTCTA,2130;CCACAA,2157;GCTTA,1082;CTTCCA,1060;GAGATA,1192;ATGCCT,2129;TATTTTT,1078;CTTGCTT,1161;ATGAAAC,2127;AAAAGTT,1097;GAATTCA,1076;GAACTTC,1196;GGACCTA,2116;GTCGATT,2141;AACGCCT,1105;AATATGC,1198;ACGACTAC,1100;GGTGT,2125;TAGCATGC,1202;AGTGGA,1067;TAGGCCAT,1212;TGCAAGGA,2115;TGGTACGT,1059;TCTCAGTC,2012;CCGGATAT,2001;CGCCTTAT,2034;AGGC,1091;GATC,1172;TCAC,1220;AGGAT,1110;ATTGA,1098;CATCT,1056;CCTAC,1213;GAGGA,2014;GGAAC,1113;GTCAA,2133;TAATA,2101;TACAT,1005;TCGTT,1084;ACCTAA,1041;ATATGT,2109;ATCGTA,1085;CATCGT,1179;CGCGGT,1072;CTATTA,1104;GCCAGT,1051;GGAAGA,1049;GTACTT,2018;GTTGAA,1090;TAACGA,1147;TGGCTA,1095;ACGTGTT,1046;ATTAATT,2006;ATTGGAT,1117;CATAAGT,1177;CGCTGAT,2123;CGGTAGA,1088;CTACGGA,1070;GCGGAAT,2016;TAGCGGA,1099;TCGAAGA,1114;TCTGTGA,2166;TGCTGGA,1170;AACCGAGA,1043;ACAGGGAA,1205;ACGTGGTA,1103;CCATGGGT,1064;CGCGGAGA,1089;CGTGTGGT,2005;GCTGTGGA,1169;GGATTGGT,2019;GTGAGGGT,1191;TATCGGGA,1029;TTCCTGGA,1037;)
description
Panicum virgatum
http://purl.obolibrary.org/obo/NCBITaxon_38727
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Panicum virgatum
title