SAMN02086259
External Id
Cornell University
INSDC center name
2013-04-30T11:29:15.120Z
INSDC first public
2013-04-30T15:23:12.673Z
INSDC last update
SRS417443
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417443
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,MoG;TGCA,T234;ACTA,Tx303;CAGA,NC260;AACT,H49;GCGT,H99;TGCGA,L578;CGAT,NC296A;CGCTT,NC348;TCACC,R177;CTAGC,CML321;ACAAA,4226;TTCTC,A679;AGCCC,BLANK;GTATT,Tzi9;CTGTA,CI1872;ACCGT,SA24;GTAA,R229;GGTTGT,Tzi18;CCAGCT,NC340;TTCAGA,NC310;TAGGAA,3811;GCTCTA,B37;CCACAA,NC33;GCTTA,N6;CTTCCA,CML341;GAGATA,H105W;ATGCCT,A4415;TATTTTT,A6;CTTGCTT,F2834T;ATGAAAC,Mo44;AAAAGTT,Tzi16;GAATTCA,CML158Q;GAACTTC,Il677a;GGACCTA,VaW6;GTCGATT,SC55;AACGCCT,Ky21;AATATGC,Mo18W;ACGACTAC,A188;GGTGT,B64;TAGCATGC,Hy;AGTGGA,Mo24W;TAGGCCAT,NC232;TGCAAGGA,Tx601;TGGTACGT,Ki21;TCTCAGTC,NC264;CCGGATAT,CML77;CGCCTTAT,D940Y;AGGC,NC344;GATC,CML103;TCAC,MS71;AGGAT,Mo46;ATTGA,NC294;CATCT,B14A;CCTAC,NC336;GAGGA,T8;GGAAC,B57;GTCAA,NC306;TAATA,A214N;TACAT,Tzi11;TCGTT,CML11;ACCTAA,Hi27;ATATGT,CML264;ATCGTA,B115;CATCGT,CML331;CGCGGT,ND246;CTATTA,NC296;GCCAGT,DE1;GGAAGA,NC324;GTACTT,Va17;GTTGAA,MS1334;TAACGA,Il101;TGGCTA,CML314;ACGTGTT,GA209;ATTAATT,Va14;ATTGGAT,SD44;CATAAGT,Tzi10;CGCTGAT,A641;CGGTAGA,GT112;CTACGGA,C123;GCGGAAT,SD40;TAGCGGA,Mt42;TCGAAGA,R4;TCTGTGA,SC357;TGCTGGA,NC342;AACCGAGA,CI21E;ACAGGGAA,B105;ACGTGGTA,CML5;CCATGGGT,B52;CGCGGAGA,CM7;CGTGTGGT,IDS91;GCTGTGGA,NC358;GGATTGGT,N7A;GTGAGGGT,NC354;TATCGGGA,CML254;TTCCTGGA,BLANK;CTCC,MoG;TGCA,T234;ACTA,Tx303;CAGA,NC260;AACT,H49;GCGT,H99;TGCGA,L578;CGAT,NC296A;CGCTT,NC348;TCACC,R177;CTAGC,CML321;ACAAA,4226;TTCTC,A679;AGCCC,BLANK;GTATT,Tzi9;CTGTA,CI1872;ACCGT,SA24;GTAA,R229;GGTTGT,Tzi18;CCAGCT,NC340;TTCAGA,NC310;TAGGAA,3811;GCTCTA,B37;CCACAA,NC33;GCTTA,N6;CTTCCA,CML341;GAGATA,H105W;ATGCCT,A4415;TATTTTT,A6;CTTGCTT,F2834T;ATGAAAC,Mo44;AAAAGTT,Tzi16;GAATTCA,CML158Q;GAACTTC,Il677a;GGACCTA,VaW6;GTCGATT,SC55;AACGCCT,Ky21;AATATGC,Mo18W;ACGACTAC,A188;GGTGT,B64;TAGCATGC,Hy;AGTGGA,Mo24W;TAGGCCAT,NC232;TGCAAGGA,Tx601;TGGTACGT,Ki21;TCTCAGTC,NC264;CCGGATAT,CML77;CGCCTTAT,D940Y;AGGC,NC344;GATC,CML103;TCAC,MS71;AGGAT,Mo46;ATTGA,NC294;CATCT,B14A;CCTAC,NC336;GAGGA,T8;GGAAC,B57;GTCAA,NC306;TAATA,A214N;TACAT,Tzi11;TCGTT,CML11;ACCTAA,Hi27;ATATGT,CML264;ATCGTA,B115;CATCGT,CML331;CGCGGT,ND246;CTATTA,NC296;GCCAGT,DE1;GGAAGA,NC324;GTACTT,Va17;GTTGAA,MS1334;TAACGA,Il101;TGGCTA,CML314;ACGTGTT,GA209;ATTAATT,Va14;ATTGGAT,SD44;CATAAGT,Tzi10;CGCTGAT,A641;CGGTAGA,GT112;CTACGGA,C123;GCGGAAT,SD40;TAGCGGA,Mt42;TCGAAGA,R4;TCTGTGA,SC357;TGCTGGA,NC342;AACCGAGA,CI21E;ACAGGGAA,B105;ACGTGGTA,CML5;CCATGGGT,B52;CGCGGAGA,CM7;CGTGTGGT,IDS91;GCTGTGGA,NC358;GGATTGGT,N7A;GTGAGGGT,NC354;TATCGGGA,CML254;TTCCTGGA,BLANK;CTCC,MoG;TGCA,T234;ACTA,Tx303;CAGA,NC260;AACT,H49;GCGT,H99;TGCGA,L578;CGAT,NC296A;CGCTT,NC348;TCACC,R177;CTAGC,CML321;ACAAA,4226;TTCTC,A679;AGCCC,BLANK;GTATT,Tzi9;CTGTA,CI1872;ACCGT,SA24;GTAA,R229;GGTTGT,Tzi18;CCAGCT,NC340;TTCAGA,NC310;TAGGAA,3811;GCTCTA,B37;CCACAA,NC33;GCTTA,N6;CTTCCA,CML341;GAGATA,H105W;ATGCCT,A4415;TATTTTT,A6;CTTGCTT,F2834T;ATGAAAC,Mo44;AAAAGTT,Tzi16;GAATTCA,CML158Q;GAACTTC,Il677a;GGACCTA,VaW6;GTCGATT,SC55;AACGCCT,Ky21;AATATGC,Mo18W;ACGACTAC,A188;GGTGT,B64;TAGCATGC,Hy;AGTGGA,Mo24W;TAGGCCAT,NC232;TGCAAGGA,Tx601;TGGTACGT,Ki21;TCTCAGTC,NC264;CCGGATAT,CML77;CGCCTTAT,D940Y;AGGC,NC344;GATC,CML103;TCAC,MS71;AGGAT,Mo46;ATTGA,NC294;CATCT,B14A;CCTAC,NC336;GAGGA,T8;GGAAC,B57;GTCAA,NC306;TAATA,A214N;TACAT,Tzi11;TCGTT,CML11;ACCTAA,Hi27;ATATGT,CML264;ATCGTA,B115;CATCGT,CML331;CGCGGT,ND246;CTATTA,NC296;GCCAGT,DE1;GGAAGA,NC324;GTACTT,Va17;GTTGAA,MS1334;TAACGA,Il101;TGGCTA,CML314;ACGTGTT,GA209;ATTAATT,Va14;ATTGGAT,SD44;CATAAGT,Tzi10;CGCTGAT,A641;CGGTAGA,GT112;CTACGGA,C123;GCGGAAT,SD40;TAGCGGA,Mt42;TCGAAGA,R4;TCTGTGA,SC357;TGCTGGA,NC342;AACCGAGA,CI21E;ACAGGGAA,B105;ACGTGGTA,CML5;CCATGGGT,B52;CGCGGAGA,CM7;CGTGTGGT,IDS91;GCTGTGGA,NC358;GGATTGGT,N7A;GTGAGGGT,NC354;TATCGGGA,CML254;TTCCTGGA,BLANK;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title