SAMN02086277
External Id
Cornell University
INSDC center name
2013-04-30T11:29:04.367Z
INSDC first public
2013-04-30T21:38:21.847Z
INSDC last update
SRS417496
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417496
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;CTCC,Ames23418;TGCA,Ames23441;ACTA,Ames27026;CAGA,Ames24711;AACT,Ames24738;GCGT,Ames23468;TGCGA,PI601584;CGAT,Ames22039;CGCTT,PI233322;TCACC,Ames24752;CTAGC,PI415085;ACAAA,PI200189;TTCTC,Ames19310;AGCCC,blank;GTATT,Ames19311;CTGTA,Ames23457;ACCGT,PI267167;GTAA,Ames27020;GGTTGT,Ames22442;CCAGCT,PI568160;TTCAGA,Ames21096;TAGGAA,Ames23450;GCTCTA,Ames24748;CCACAA,Ames23482;GCTTA,PI601611;CTTCCA,Ames23501;GAGATA,PI303935;ATGCCT,PI567794;TATTTTT,PI644102;CTTGCTT,Ames24709;ATGAAAC,NSL242483;AAAAGTT,WD456;GAATTCA,PI303933;GAACTTC,Ames23483;GGACCTA,Ames23464;GTCGATT,PI587141;AACGCCT,Ames23405;AATATGC,Ames23449;ACGACTAC,Ames23433;GGTGT,Ames24743;TAGCATGC,PI587141;AGTGGA,Ames23491;TAGGCCAT,PI607523;TGCAAGGA,PI601170;TGGTACGT,Ames23420;TCTCAGTC,PI539871;CCGGATAT,Ames22062;CGCCTTAT,Ames24717;AGGC,PI186190;GATC,Ames22059;TCAC,Ames23414;AGGAT,Ames23466;ATTGA,NSL30867;CATCT,PI358525;CCTAC,PI601776;GAGGA,Ames24708;GGAAC,PI561694;GTCAA,PI587133;TAATA,NSL81597;TACAT,PI358535;TCGTT,Ames24724;ACCTAA,Ames10287;ATATGT,Ames27194;ATCGTA,Ames24733;CATCGT,Ames23484;CGCGGT,Ames23488;CTATTA,NSL42878;GCCAGT,Ames23508;GGAAGA,Ames23447;GTACTT,PI358523;GTTGAA,PI594066;TAACGA,Ames22043;TGGCTA,Ames27028;ACGTGTT,NSL81595;ATTAATT,Ames23467;ATTGGAT,Ames24747;CATAAGT,Ames24735;CGCTGAT,B73;CGGTAGA,Ames24725;CTACGGA,Ames27029;GCGGAAT,Ames24719;TAGCGGA,NSL30062;TCGAAGA,PI391665;TCTGTGA,SA24;TGCTGGA,PI257517;AACCGAGA,Ames23478;ACAGGGAA,PI594069;ACGTGGTA,PI601459;CCATGGGT,Ames23461;CGCGGAGA,Ames23505;CGTGTGGT,Ames23430;GCTGTGGA,Ames23502;GGATTGGT,PI594081;GTGAGGGT,Ames27057;TATCGGGA,Ames22443;TTCCTGGA,PI221743;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title