SAMN02086286
External Id
Cornell University
INSDC center name
2013-04-30T11:29:00.137Z
INSDC first public
2013-04-30T22:00:12.773Z
INSDC last update
SRS417505
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417505
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;CTCC,Ames27156;TGCA,MP420;ACTA,MR08(Costeno)S6;CAGA,Ames12738;AACT,Ames12728;GCGT,PI186193;TGCGA,NSL22893;CGAT,PI601404;CGCTT,PI558528;TCACC,NSL22894;CTAGC,NC87;ACAAA,PI550522;TTCTC,Ames12732;AGCCC,MR20(ShoePeg)S7;GTATT,L690;CTGTA,Ames27157;ACCGT,PI406120;GTAA,PI221749;GGTTGT,Ames27157;CCAGCT,PI558518;TTCAGA,NSL65865;TAGGAA,Ames18999;GCTCTA,Ames27163;CCACAA,Ames28411;GCTTA,PI186183;CTTCCA,Ames30840;GAGATA,PI600944;ATGCCT,Ames12732;TATTTTT,PI561529;CTTGCTT,Ames27162;ATGAAAC,Ames19323;AAAAGTT,Ames19285;GAATTCA,Ames7871;GAACTTC,Ames28291;GGACCTA,PI558516;GTCGATT,NSL437899;AACGCCT,PI633924;AATATGC,Fe;ACGACTAC,GT601;GGTGT,PI550441;TAGCATGC,PI641225;AGTGGA,Tx205;TAGGCCAT,PI542778;TGCAAGGA,PI391663;TGGTACGT,Ames27162;TCTCAGTC,NC44;CCGGATAT,PI594060;CGCCTTAT,PI561523;AGGC,PI303942;GATC,MP717;TCAC,MR25(Poropo)S5;AGGAT,PI550522;ATTGA,PI517971;CATCT,NSL22893;CCTAC,PI561520;GAGGA,Ames27144;GGAAC,Ames12726;GTCAA,NSL22628;TAATA,Ames27155;TACAT,Ames27191;TCGTT,MR02(Assiniboine);ACCTAA,B73;ATATGT,MR19(SantoDomingo);ATCGTA,Ames26812;CATCGT,PI550519;CGCGGT,Ames27062;CTATTA,PI542777;GCCAGT,Ames27156;GGAAGA,Tx114;GTACTT,PI593012;GTTGAA,PI601230;TAACGA,Ames27170;TGGCTA,SA24;ACGTGTT,MR20(ShoePeg);ATTAATT,Ames27190;ATTGGAT,PI564717;CATAAGT,Ames27144;CGCTGAT,Ames19284;CGGTAGA,PI542952;CTACGGA,PI641226;GCGGAAT,NSL29898;TAGCGGA,Ames27261;TCGAAGA,PI558530;TCTGTGA,PI601490;TGCTGGA,MR05(Cateto)S6;AACCGAGA,GA224;ACAGGGAA,PI638594;ACGTGGTA,Ames27145;CCATGGGT,Ames27116;CGCGGAGA,Ames27152;CGTGTGGT,blank;GCTGTGGA,PI543008;GGATTGGT,PI587135;GTGAGGGT,NSL22635;TATCGGGA,PI548783;TTCCTGGA,Tx772;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title