SAMN01923086
External Id
Australian Infectious Diseases Research Centre, School of Chemistry and Molecular Biosciences, University of Queensland
INSDC center name
2014-03-19T00:00:00Z
INSDC first public
2019-05-23T15:26:06.965Z
INSDC last update
SRS396764
INSDC secondary accession
live
INSDC status
Pathogen.ba-cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS396764
SRA accession
2004
collection date
Strain EC958 was selected as a representative of the ST131 CTX-M-15 producing lineage circulating in the Northwest region of England (from an area encompassing Greater Manchester in the South to the Lake District in the North during the period of October 2004 to June 2009). It was recovered from a urine sample of a patient presenting in the community with UTI. It was gentamicin susceptible, resistant to ciprofloxacin, produced CTX-M-15 ESBL and carried the CMY-23 type AmpC cephalosporinase. In addition, EC958 is a member of the PFGE defined UK epidemic strain A.
description
United Kingdom: Northwest England
geo loc name
urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
EC958
isolate
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
EC958
label
Escherichia coli O25b:H4-ST131
http://purl.obolibrary.org/obo/NCBITaxon_941322
organism
UPEC
pathotype
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
specific host
O25b:H4-ST131
strain
Escherichia coli O25b:H4-ST131 str. EC958
title