SAMN02315104
External Id
Institute of Bioinformatics and Applied Biotechnology
INSDC center name
2014-06-01T00:00:00Z
INSDC first public
2021-02-28T02:08:26.472Z
INSDC last update
SRS2347334
INSDC secondary accession
live
INSDC status
MIGS.eu
NCBI submission model
MIGS.eu.5.0
NCBI submission package
SRS2347334
SRA accession
temperate
biome
2012-07
collection date
Amaranthus hypochondriacus is a C4 dicot species belonging to the order Caryophyllales and is known to produce lysine rich edible seeds. At IBAB, the north Karnataka (south India) variety of this species has been sequenced using Illumina GA IIx (paired end sequencing) to study the reasons underlying the high lysine trait of the species. The main objectives of the study include sequencing and annotating the genome and transcriptome of this species, and analysing the expression profile of the genes responsible for producing high lysine in the seeds.
description
466 Mb
http://www.ebi.ac.uk/efo/EFO_0007937
estimated size
India
geo loc name
eukaryote
http://edamontology.org/topic_2818
investigation type
AhT5s_v2
isolate
Rajgira white
label
12.971545 N 77.594606 E
lat lon
16
num_replicons
Amaranthus hypochondriacus
http://purl.obolibrary.org/obo/NCBITaxon_28502
organism
diploid
http://purl.obolibrary.org/obo/CL_0000415
ploidy
Sequencing of Amaranthus hypochondriacus, a C4 dicot producing lysine rich edible seeds
project name
seeds
http://www.ebi.ac.uk/efo/EFO_0000991
propagation
Eukaryotic sample (pooled transcriptome) for Amaranthus hypochondriacus
title