SAMN02055802
External Id
Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, Fujian
INSDC center name
2013-04-24T00:00:00Z
INSDC first public
2021-02-28T02:05:39.868Z
INSDC last update
SRS416168
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS416168
SRA accession
2011-11-11
collection date
a cross between a japonica rice variety Nipponbare and an indica rice variety LPBG
cultivar
Mapping of quantitative trait loci underlying cold tolerance in rice seedlings via high-throughput sequencing of pooled extremes. In total, 10,800 F3 seedlings from a cross between rice varieties Nipponbare and LPBG were tested for cold tolerance, from which 430 extremely sensitive (ES) and 385 extremely tolerant (ET) individuals were selected and a pair of DNA pools were constructed. By sequencing the two DNA pools with the Illumina technology, a total of ~800 M 101-bp pair-end reads were obtained, with approximately 360 M and 440 M from the ES and ET pools, respectively.
description
China: Fujian
geo loc name
Oryza sativa
http://purl.obolibrary.org/obo/NCBITaxon_4530
organism
extremely cold tolerant at seeding stage
phenotype
Rice ET pool (385 extremely tolerant individuals)
title