SAMN02086284
External Id
Cornell University
INSDC center name
2013-04-30T11:29:01.140Z
INSDC first public
2013-04-30T22:00:12.010Z
INSDC last update
SRS417503
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417503
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;CTCC,Ames22443;TGCA,NSL437936;ACTA,PI584529;CAGA,NSL32736;AACT,Ames27046;GCGT,PI340821;TGCGA,PI257512;CGAT,PI522250;CGCTT,PI518660;TCACC,PI535913;CTAGC,PI267170;ACAAA,PI550531;TTCTC,PI340862;AGCCC,Ames26117;GTATT,NSL65864;CTGTA,PI267165;ACCGT,Ames24585;GTAA,PI415077;GGTTGT,Ames23436;CCAGCT,PI233319;TTCAGA,Ames27050;TAGGAA,PI433488;GCTCTA,NSL32731;CCACAA,Ames27049;GCTTA,NSL437908;CTTCCA,PI601726;GAGATA,NSL437979;ATGCCT,Ames27106;TATTTTT,PI535925;CTTGCTT,Ames27042;ATGAAAC,PI607525;AAAAGTT,Ames27052;GAATTCA,PI535921;GAACTTC,PI233316;GGACCTA,Ames20191;GTCGATT,PI538231;AACGCCT,Ab610;AATATGC,NSL437992;ACGACTAC,SA24;GGTGT,PI267166;TAGCATGC,NSL32735;AGTGGA,Ames27047;TAGGCCAT,PI550554;TGCAAGGA,PI535920;TGGTACGT,PI550571;TCTCAGTC,blank;CCGGATAT,PI233313;CGCCTTAT,PI267168;AGGC,PI550520;GATC,PI601573;TCAC,PI601361;AGGAT,PI522252;ATTGA,Ames27025;CATCT,PI550491;CCTAC,PI257507;GAGGA,PI415082;GGAAC,PI369438;GTCAA,PI550567;TAATA,Ames27038;TACAT,Ames20140;TCGTT,NSL437928;ACCTAA,PI601403;ATATGT,B73;ATCGTA,NSL32732;CATCGT,PI433486;CGCGGT,PI415089;CTATTA,PI550542;GCCAGT,NSL32727;GGAAGA,PI415091;GTACTT,PI343952;GTTGAA,PI257516;TAACGA,PI550503;TGGCTA,PI358524;ACGTGTT,PI406113;ATTAATT,NSL32739;ATTGGAT,PI340823;CATAAGT,PI267171;CGCTGAT,Ames27037;CGGTAGA,Ames20190;CTACGGA,PI601467;GCGGAAT,PI587126;TAGCGGA,PI267169;TCGAAGA,PI236997;TCTGTGA,PI550573;TGCTGGA,NSL22630;AACCGAGA,PI601727;ACAGGGAA,PI340825;ACGTGGTA,Ames27041;CCATGGGT,PI233314;CGCGGAGA,PI369442;CGTGTGGT,PI592735;GCTGTGGA,PI340822;GGATTGGT,PI601003;GTGAGGGT,Ames27045;TATCGGGA,Ames27031;TTCCTGGA,PI550561;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title