SAMD00002578
External Id
Laboratory of Environmental Plant Microbiology, Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University
INSDC center name
2014-01-13T00:00:00Z
INSDC first public
2015-10-12T22:45:30Z
INSDC last update
DRS000530
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
DRS000530
SRA accession
Field metadata., Country: Japan, Latitude: 38-27-39.37' N, Longitude: 141-5-33.33' E, Altitude: 4 m a.s.l., Classification: Gray lowland soil (classification of cultivated soils in Japan, 3rd approximation), Geomorphic Position: Alluvial plain, Slope Characteristics: Flat, Precipitation: Udic soil moisture regime, Water Table Depth: 97 cm, Drainage: Poorly drained, Land Use: Paddy rice field, Parent material: Unconsolidated alluvium, Vegetation: Paddy field after harvest
description
soil metagenome
http://purl.obolibrary.org/obo/NCBITaxon_410658
organism
General description. Rice plants (Oryza sativa L. cultivar ÂgNipponbareÂh) were cultivated in paddy fields dressed with low N (LN; 0 kg ha-1). Soil was sampled on August 26, 2009 from each fields. We extracted soil DNA and amplified 16S rRNA genes using a primer set 27F, 518R. These PCR primers target the V1 and V3 region.
sample comment
DRS000530
sample name
16S rRNA gene study of soil associated bacteria in paddy fields dressed with low nitrogen.
title