SAMN02086278
External Id
Cornell University
INSDC center name
2013-04-30T11:29:03.920Z
INSDC first public
2013-04-30T21:49:12.883Z
INSDC last update
SRS417497
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417497
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;CTCC,PI531084;TGCA,Ames27122;ACTA,PI511805;CAGA,PI511804;AACT,Ames12731;GCGT,Ames27163;TGCGA,T8;CGAT,blank;CGCTT,PI558517;TCACC,SA24;CTAGC,Tx204;ACAAA,PI221747;TTCTC,PI593008;AGCCC,Ames12737;GTATT,PI538007;CTGTA,NSL30038;ACCGT,PI593019;GTAA,PI550441;GGTTGT,Ames26138;CCAGCT,Ames12733;TTCAGA,PI200193;TAGGAA,PI340874;GCTCTA,PI186219;CCACAA,PI303928;GCTTA,Ames27169;CTTCCA,Ames27144;GAGATA,Ames27166;ATGCCT,Ames12734;TATTTTT,PI561525;CTTGCTT,PI593009;ATGAAAC,Ames27171;AAAAGTT,PI542948;GAATTCA,NC89;GAACTTC,PI587130;GGACCTA,NSL30038;GTCGATT,PI587145;AACGCCT,Ames27152;AATATGC,CUB57c-2;ACGACTAC,Ames14114;GGTGT,Ames28291;TAGCATGC,PI550518;AGTGGA,Ames27144;TAGGCCAT,Ames27134;TGCAAGGA,PI550518;TGGTACGT,Ames19284;TCTCAGTC,Ames27131;CCGGATAT,Ames27261;CGCCTTAT,PI558526;AGGC,Ames27064;GATC,PI593015;TCAC,PI587146;AGGAT,PI587136;ATTGA,Ames18999;CATCT,PI406116;CCTAC,Ames27117;GAGGA,PI558520;GGAAC,NSL22629;GTCAA,PI558525;TAATA,Ames27139;TACAT,Ames27192;TCGTT,NSL65865;ACCTAA,PI186216;ATATGT,NSL65873;ATCGTA,B73;CATCGT,Ames27110;CGCGGT,PI198888;CTATTA,PI593010;GCCAGT,3167B;GGAAGA,PI406119;GTACTT,Ames27133;GTTGAA,PI550442;TAACGA,Ames2331;TGGCTA,Ames14113;ACGTGTT,PI558529;ATTAATT,PI558524;ATTGGAT,PI561535;CATAAGT,PI594084;CGCTGAT,PI558531;CGGTAGA,PI593007;CTACGGA,Ames27066;GCGGAAT,PI340875;TAGCGGA,PI186182;TCGAAGA,NSL42872;TCTGTGA,PI550522;TGCTGGA,PI198906;AACCGAGA,PI561537;ACAGGGAA,Ames7870;ACGTGGTA,PI303929;CCATGGGT,Ames10244;CGCGGAGA,Ames12734;CGTGTGGT,Ames27171;GCTGTGGA,PI593014;GGATTGGT,Ames26138;GTGAGGGT,PI550521;TATCGGGA,Ames27155;TTCCTGGA,PI558522;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title