SAMN02086287
External Id
Cornell University
INSDC center name
2013-04-30T11:28:59.610Z
INSDC first public
2013-04-30T22:00:13.130Z
INSDC last update
SRS417506
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417506
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;CTCC,Ames27170;TGCA,PI593013;ACTA,Ames19002;CAGA,CML503;AACT,CML118;GCGT,Ames26808;TGCGA,CML422;CGAT,CML324;CGCTT,CML330;TCACC,CML426;CTAGC,blank;ACAAA,CML441;TTCTC,PI509045;AGCCC,PI221797;GTATT,Mp04:97;CTGTA,SA24;ACCGT,CML79;GTAA,PI340859;GGTTGT,CML431;CCAGCT,CML295;TTCAGA,CML370;TAGGAA,PI186198;GCTCTA,Ames27112;CCACAA,PI186197;GCTTA,NSL22894;CTTCCA,Ames14111;GAGATA,CML144;ATGCCT,Ames12730;TATTTTT,CML269;CTTGCTT,CML316;ATGAAAC,CML423;AAAAGTT,Ames10262;GAATTCA,Ames27147;GAACTTC,PI641224;GGACCTA,CML448;GTCGATT,PI564716;AACGCCT,Ames12740;AATATGC,Ames27136;ACGACTAC,PI594058;GGTGT,CML454;TAGCATGC,Ames10251;AGTGGA,NSL53083;TAGGCCAT,Ames27174;TGCAAGGA,Ames10250;TGGTACGT,CML359;TCTCAGTC,PI596629;CCGGATAT,Ames23458;CGCCTTAT,PI221738;AGGC,PI558521;GATC,PI550517;TCAC,Ames29451;AGGAT,CML377;ATTGA,PI561521;CATCT,PI641238;CCTAC,CML217;GAGGA,Ames22056;GGAAC,CML309;GTCAA,PI186223;TAATA,CML390;TACAT,BAIIIId-2;TCGTT,Ames12739;ACCTAA,PI593017;ATATGT,CML487;ATCGTA,Ames27259;CATCGT,Ames27146;CGCGGT,Ames23465;CTATTA,CML430;GCCAGT,PI550492;GGAAGA,CML223;GTACTT,CML225;GTTGAA,PI511315;TAACGA,Ames27125;TGGCTA,B73;ACGTGTT,SC333;ATTAATT,CML196;ATTGGAT,CML229;CATAAGT,CML336;CGCTGAT,Ames27172;CGGTAGA,Ames22051;CTACGGA,CML334;GCGGAAT,Ames10277;TAGCGGA,Ames10256;TCGAAGA,CML421;TCTGTGA,Ames22063;TGCTGGA,Ames26138;AACCGAGA,PI587148;ACAGGGAA,Ames25179;ACGTGGTA,CML391;CCATGGGT,PI406124;CGCGGAGA,PI543916;CGTGTGGT,Ames27168;GCTGTGGA,CML416;GGATTGGT,Ames10261;GTGAGGGT,SC359;TATCGGGA,CML329;TTCCTGGA,Ames12729;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title