SAMN02116939
External Id
Cornell University
INSDC center name
2013-05-03T12:23:47.513Z
INSDC first public
2013-05-05T22:49:13.113Z
INSDC last update
SRS418508
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418508
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,1061;TGCA,1055;ACTA,1216;CAGA,1108;AACT,1066;GCGT,1199;TGCGA,1107;CGAT,1164;CGCTT,1168;TCACC,2106;CTAGC,1173;ACAAA,1083;TTCTC,1178;AGCCC,2121;GTATT,1184;CTGTA,1115;ACCGT,1068;GTAA,2003;GGTTGT,1193;CCAGCT,1074;TTCAGA,1209;TAGGAA,1109;GCTCTA,1186;CCACAA,2011;GCTTA,1044;CTTCCA,1211;GAGATA,1218;ATGCCT,1187;TATTTTT,2004;CTTGCTT,1194;ATGAAAC,2108;AAAAGTT,1048;GAATTCA,1101;GAACTTC,1092;GGACCTA,1069;GTCGATT,2102;AACGCCT,1195;AATATGC,2015;ACGACTAC,1120;GGTGT,1062;TAGCATGC,1217;AGTGGA,1200;TAGGCCAT,2017;TGCAAGGA,1185;TGGTACGT,1081;TCTCAGTC,1119;CCGGATAT,1057;CGCCTTAT,2124;AGGC,1174;GATC,2002;TCAC,1093;AGGAT,2100;ATTGA,1102;CATCT,1071;CCTAC,1221;GAGGA,1180;GGAAC,2134;GTCAA,1112;TAATA,1190;TACAT,2113;TCGTT,1171;ACCTAA,2104;ATATGT,1094;ATCGTA,2119;CATCGT,1210;CGCGGT,1047;CTATTA,1206;GCCAGT,1052;GGAAGA,2120;GTACTT,blank;GTTGAA,1183;TAACGA,1214;TGGCTA,1079;ACGTGTT,2135;ATTAATT,1116;ATTGGAT,1087;CATAAGT,1106;CGCTGAT,2137;CGGTAGA,1201;CTACGGA,1080;GCGGAAT,2112;TAGCGGA,1075;TCGAAGA,1166;TCTGTGA,2007;TGCTGGA,1063;AACCGAGA,2107;ACAGGGAA,2111;ACGTGGTA,1188;CCATGGGT,2013;CGCGGAGA,2128;CGTGTGGT,1054;GCTGTGGA,1182;GGATTGGT,2138;GTGAGGGT,1065;TATCGGGA,2114;TTCCTGGA,1215;)
description
Panicum virgatum
http://purl.obolibrary.org/obo/NCBITaxon_38727
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Panicum virgatum
title