SAMN02086290
External Id
Cornell University
INSDC center name
2013-04-30T11:28:58.050Z
INSDC first public
2013-04-30T22:10:18.473Z
INSDC last update
SRS417509
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417509
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;CTCC,PI550902;TGCA,Ames26771;ACTA,PI595547;CAGA,PI540744;AACT,PI639935;GCGT,Ames26604;TGCGA,PI506247;CGAT,PI595561;CGCTT,PI641260;TCACC,PI641075;CTAGC,PI601774;ACAAA,blank;TTCTC,PI540747;AGCCC,PI595552;GTATT,PI641067;CTGTA,PI635141;ACCGT,PI641265;GTAA,SA24;GGTTGT,PI619430;CCAGCT,PI595571;TTCAGA,PI639943;TAGGAA,PI540749;GCTCTA,PI358532;CCACAA,Ames19326;GCTTA,PI550907;CTTCCA,PI639944;GAGATA,Ames27074;ATGCCT,PI595550;TATTTTT,Ames27094;CTTGCTT,PI635137;ATGAAAC,PI639946;AAAAGTT,Ames28185;GAATTCA,PI391415;GAACTTC,PI506246;GGACCTA,Ames8399;GTCGATT,PI542716;AACGCCT,PI550919;AATATGC,Ames23456;ACGACTAC,PI595527;GGTGT,PI639929;TAGCATGC,PI391416;AGTGGA,PI601789;TAGGCCAT,PI601329;TGCAAGGA,PI540742;TGGTACGT,PI641711;TCTCAGTC,Ames8396;CCGGATAT,PI594088;CGCCTTAT,PI648423;AGGC,PI641074;GATC,PI595529;TCAC,PI550909;AGGAT,PI641069;ATTGA,Ames27072;CATCT,PI506255;CCTAC,PI639942;GAGGA,PI639926;GGAAC,PI635123;GTCAA,Ames27115;TAATA,PI200196;TACAT,PI600954;TCGTT,PI641249;ACCTAA,PI550911;ATATGT,PI595553;ATCGTA,PI550918;CATCGT,Ames27018;CGCGGT,Ames27096;CTATTA,PI595565;GCCAGT,Ames27081;GGAAGA,B73;GTACTT,Ames22024;GTTGAA,PI601782;TAACGA,PI600791;TGGCTA,PI233317;ACGTGTT,PI595532;ATTAATT,PI595540;ATTGGAT,PI635138;CATAAGT,Ames23450;CGCTGAT,PI591017;CGGTAGA,PI639931;CTACGGA,Ames22761;GCGGAAT,PI639949;TAGCGGA,Ames22021;TCGAAGA,Ames26004;TCTGTGA,Ames26766;TGCTGGA,PI595569;AACCGAGA,PI635134;ACAGGGAA,Ames26604;ACGTGGTA,Ames27087;CCATGGGT,PI641263;CGCGGAGA,Ames25177;CGTGTGGT,PI641244;GCTGTGGA,PI595566;GGATTGGT,Ames27111;GTGAGGGT,PI587154;TATCGGGA,Ames22019;TTCCTGGA,NSL28967;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title