SAMN02086272
External Id
Cornell University
INSDC center name
2013-04-30T11:29:06.690Z
INSDC first public
2013-04-30T21:38:13.427Z
INSDC last update
SRS417491
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417491
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;CTCC,PI198895;TGCA,Ames12819;ACTA,Ames2333;CAGA,PI594067;AACT,Ames22767;GCGT,PI601777;TGCGA,NSL42874;CGAT,PI391672;CGCTT,PI587142;TCACC,PI601496;CTAGC,PI595558;ACAAA,Ames27123;TTCTC,Ames23469;AGCCC,PI594087;GTATT,NSL29317;CTGTA,PI536520;ACCGT,PI594071;GTAA,PI601559;GGTTGT,Ames23922;CCAGCT,Ames22439;TTCAGA,PI601300;TAGGAA,Ames23389;GCTCTA,PI639950;CCACAA,PI595562;GCTTA,PI539870;CTTCCA,Ames26761;GAGATA,PI601458;ATGCCT,Ames12814;TATTTTT,PI594064;CTTGCTT,PI594077;ATGAAAC,PI601790;AAAAGTT,PI594075;GAATTCA,Ames12815;GAACTTC,Ames22017;GGACCTA,PI601332;GTCGATT,Ames27129;AACGCCT,PI587140;AATATGC,PI186227;ACGACTAC,PI594052;GGTGT,PI601780;TAGCATGC,Ames12817;AGTGGA,blank;TAGGCCAT,PI604606;TGCAAGGA,PI644100;TGGTACGT,PI601375;TCTCAGTC,PI594091;CCGGATAT,PI639933;CGCCTTAT,CML107;AGGC,PI587154;GATC,PI594089;TCAC,SA24;AGGAT,Ames2335;ATTGA,PI340853;CATCT,Ames22756;CCTAC,PI542715;GAGGA,NSL42873;GGAAC,PI594056;GTCAA,B73;TAATA,PI635129;TACAT,PI641256;TCGTT,PI303932;ACCTAA,Ames26756;ATATGT,Ames12821;ATCGTA,PI587151;CATCGT,PI601808;CGCGGT,PI601787;CTATTA,Ames27196;GCCAGT,PI601781;GGAAGA,PI594078;GTACTT,PI641072;GTTGAA,CML115;TAACGA,PI595533;TGGCTA,Ames22016;ACGTGTT,PI594051;ATTAATT,PI594065;ATTGGAT,Ames22023;CATAAGT,PI648425;CGCTGAT,PI572413;CGGTAGA,PI601009;CTACGGA,Ames12736;GCGGAAT,PI601784;TAGCGGA,PI550916;TCGAAGA,PI639927;TCTGTGA,PI506251;TGCTGGA,NSL30867;AACCGAGA,PI594072;ACAGGGAA,PI587149;ACGTGGTA,PI594055;CCATGGGT,Ames12824;CGCGGAGA,PI594080;CGTGTGGT,PI601470;GCTGTGGA,Ames22022;GGATTGGT,PI200180;GTGAGGGT,Ames14408;TATCGGGA,PI619429;TTCCTGGA,PI506255;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title