SAMN02086289
External Id
Cornell University
INSDC center name
2013-04-30T11:28:58.533Z
INSDC first public
2013-04-30T22:10:13.593Z
INSDC last update
SRS417508
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417508
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;CTCC,Ames23440;TGCA,PI633728;ACTA,Ames10255;CAGA,PI506249;AACT,Ames28184;GCGT,PI595559;TGCGA,Ames27079;CGAT,PI533659;CGCTT,PI641251;TCACC,PI641064;CTAGC,PI641266;ACAAA,PI550925;TTCTC,CML199;AGCCC,CML212;GTATT,Ames27132;CTGTA,PI595568;ACCGT,PI635125;GTAA,PI639937;GGTTGT,Ames26604;CCAGCT,PI595539;TTCAGA,Ames27095;TAGGAA,PI639934;GCTCTA,PI641062;CCACAA,PI561601;GCTTA,CML224;CTTCCA,ECU770b-2;GAGATA,PI550534;ATGCCT,PI506244;TATTTTT,PI641065;CTTGCTT,Ames27089;ATGAAAC,PI538242;AAAAGTT,PI639925;GAATTCA,PI635135;GAACTTC,Ames27096;GGACCTA,PI639932;GTCGATT,Ames27101;AACGCCT,SC16;AATATGC,CML233;ACGACTAC,Ames27113;GGTGT,Ames27260;TAGCATGC,PI595556;AGTGGA,Ames27099;TAGGCCAT,Ames27076;TGCAAGGA,PI540751;TGGTACGT,Ames27056;TCTCAGTC,PI601323;CCGGATAT,PI550917;CGCCTTAT,PI641073;AGGC,CML361;GATC,PI561515;TCAC,CML492;AGGAT,Ames27088;ATTGA,Ames27097;CATCT,PI550924;CCTAC,PI641068;GAGGA,PI506245;GGAAC,PI595534;GTCAA,Ames27078;TAATA,PI595546;TACAT,PI635133;TCGTT,Ames27125;ACCTAA,SA24;ATATGT,PI506248;ATCGTA,PI540746;CATCGT,Ames27079;CGCGGT,PI595554;CTATTA,PI641063;GCCAGT,Ames23443;GGAAGA,PI550922;GTACTT,Ames27084;GTTGAA,PI635130;TAACGA,blank;TGGCTA,CML346;ACGTGTT,Ames19002;ATTAATT,Ames19308;ATTGGAT,PI595544;CATAAGT,PI506253;CGCTGAT,Ames27101;CGGTAGA,PI595563;CTACGGA,PI595543;GCGGAAT,Ames27082;TAGCGGA,B73;TCGAAGA,PI506248;TCTGTGA,Ames27089;TGCTGGA,Ames27118;AACCGAGA,CML392;ACAGGGAA,PI595541;ACGTGGTA,PI550908;CCATGGGT,PI550527;CGCGGAGA,PI635128;CGTGTGGT,PI561604;GCTGTGGA,PI550923;GGATTGGT,PI540743;GTGAGGGT,PI506254;TATCGGGA,PI540745;TTCCTGGA,PI595537;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title