SAMN01992989
External Id
University of Maryland School of Medicine, Institute for Genome Sciences
INSDC center name
2013-03-28T00:00:00Z
INSDC first public
2019-06-20T16:19:35.948Z
INSDC last update
live
INSDC status
MIGS.ba
NCBI submission model
MIGS.ba.5.0
NCBI submission package
1005505
NCBI taxon id
Velvet 1.1.07
assembly
stool
http://www.ebi.ac.uk/efo/EFO_0007874
body product
2008
collection date
Keywords: GSC:MIxS;MIGS:5.0
description
terrestrial biome [ENVO:00000446]
environment (biome)
human-associated habitat [ENVO:00009003]
environment (feature)
feces [ENVO:00002003]
environment (material)
188.07
finishing strategy (depth of coverage)
USA:Pennsylvania, Centre
geo loc name
9606
host taxid
bacteria_archaea
investigation type
Escherichia coli PA34
http://purl.obolibrary.org/obo/NCBITaxon_1005505
organism
EXHX01.1343 , EXHA26.0621
phenotype
Genomic anatomy of E.coli O157:H7 outbreaks: Insights into pathogenome evolution and population dynamics during the time-course of infection.
project name
Illumina
sequencing method
O157:H7
serotype
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
specific host
PA34
http://www.ebi.ac.uk/efo/EFO_0006465
strain
MIGS Cultured Bacterial/Archaeal sample from Escherichia coli PA34 sample MS100013745
title