SAMN02086271
External Id
Cornell University
INSDC center name
2013-04-30T11:29:07.163Z
INSDC first public
2013-04-30T21:27:21.393Z
INSDC last update
SRS417490
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417490
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;CTCC,PI561518;TGCA,PI561528;ACTA,NSL43597;CAGA,PI614820;AACT,PI550547;GCGT,CML476;TGCGA,Ames29045;CGAT,CML371;CGCTT,CML425;TCACC,Ames27179;CTAGC,B73;ACAAA,PI511313;TTCTC,T173;AGCCC,PI511318;GTATT,CML367;CTGTA,Ames27172;ACCGT,SC344;GTAA,SC375;GGTTGT,CML230;CCAGCT,PI221733;TTCAGA,CML200;TAGGAA,PI561522;GCTCTA,PI221736;CCACAA,CML498;GCTTA,PI406112;CTTCCA,PI511317;GAGATA,CML372;ATGCCT,CML386;TATTTTT,PI221739;CTTGCTT,PI406112;ATGAAAC,CML172;AAAAGTT,PI633727;GAATTCA,Ames27120;GAACTTC,CML440;GGACCTA,Ames10273;GTCGATT,Ames26769;AACGCCT,PI550559;AATATGC,Ames10253;ACGACTAC,PI200187;GGTGT,SC301;TAGCATGC,CML429;AGTGGA,CML436;TAGGCCAT,PI561517;TGCAAGGA,CML197;TGGTACGT,PI561532;TCTCAGTC,CML326;CCGGATAT,Ames28928;CGCCTTAT,CML101;AGGC,CML304;GATC,CML368;TCAC,CML383;AGGAT,CML381;ATTGA,Ames10248;CATCT,CML234;CCTAC,PI548788;GAGGA,CML98;GGAAC,PI539859;GTCAA,CML420;TAATA,CML288;TACAT,CML360;TCGTT,PI452250;ACCTAA,BAIIIIb-6;ATATGT,CML310;ATCGTA,CML434;CATCGT,CML483;CGCGGT,CML246;CTATTA,CML374;GCCAGT,CML318;GGAAGA,CML215;GTACTT,CML387;GTTGAA,PI303944;TAACGA,CML419;TGGCTA,CML376;ACGTGTT,CML418;ATTAATT,PI561516;ATTGGAT,Ames27180;CATAAGT,Ames22762;CGCTGAT,Ames27180;CGGTAGA,Mp07:121;CTACGGA,PI641232;GCGGAAT,CML345;TAGCGGA,CML142;TCGAAGA,Ames22033;TCTGTGA,CML231;TGCTGGA,CML348;AACCGAGA,CML236;ACAGGGAA,PI221822;ACGTGGTA,Ames27181;CCATGGGT,blank;CGCGGAGA,Ames27146;CGTGTGGT,PI406131;GCTGTGGA,PI596628;GGATTGGT,SA24;GTGAGGGT,PI608806;TATCGGGA,VEN981a-1;TTCCTGGA,PI558534;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title