SAMN02086291
External Id
Cornell University
INSDC center name
2013-04-30T11:28:06.663Z
INSDC first public
2013-04-30T22:10:18.827Z
INSDC last update
SRS417510
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417510
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;CTCC,Ames26813;TGCA,Ames26762;ACTA,PI594062;CAGA,PI594050;AACT,NSL29319;GCGT,PI594061;TGCGA,NSL42875;CGAT,PI594059;CGCTT,PI186228;TCACC,PI594083;CTAGC,Ames26774;ACAAA,PI601438;TTCTC,Ames24712;AGCCC,PI601004;GTATT,PI601563;CTGTA,PI198893;ACCGT,PI601502;GTAA,PI587139;GGTTGT,PI547086;CCAGCT,PI601494;TTCAGA,PI391682;TAGGAA,Ames26760;GCTCTA,PI550555;CCACAA,Ames29026;GCTTA,blank;CTTCCA,PI594082;GAGATA,PI594057;ATGCCT,PI340812;TATTTTT,Ames2334;CTTGCTT,PI594073;ATGAAAC,PI594090;AAAAGTT,PI601491;GAATTCA,PI517968;GAACTTC,Ames27183;GGACCTA,PI358531;GTCGATT,NSL22984;AACGCCT,PI648424;AATATGC,Ames24729;ACGACTAC,Ames12823;GGTGT,PI594074;TAGCATGC,PI594068;AGTGGA,NSL30059;TAGGCCAT,NSL29316;TGCAAGGA,B73;TGGTACGT,PI303925;TCTCAGTC,PI573098;CCGGATAT,Ames22040;CGCCTTAT,Ames22750;AGGC,PI221750;GATC,PI539926;TCAC,PI594063;AGGAT,PI638549;ATTGA,PI391666;CATCT,SA24;CCTAC,Ames23506;GAGGA,PI594070;GGAAC,NSL243016;GTCAA,Ames19313;TAATA,PI594047;TACAT,Ames19009;TCGTT,Ames12820;ACCTAA,PI587137;ATATGT,Ames19289;ATCGTA,PI594076;CATCGT,Ames22757;CGCGGT,NSL29289;CTATTA,NSL28966;GCCAGT,Ames22018;GGAAGA,PI597578;GTACTT,Ames2330;GTTGAA,PI427109;TAACGA,PI550566;TGGCTA,Ames19290;ACGTGTT,PI594086;ATTAATT,Ames22020;ATTGGAT,PI587138;CATAAGT,Ames12822;CGCTGAT,PI601725;CGGTAGA,Ames23470;CTACGGA,PI233312;GCGGAAT,Ames24739;TAGCGGA,Ames29013;TCGAAGA,Ames27159;TCTGTGA,Ames29015;TGCTGGA,NSL68211;AACCGAGA,PI594053;ACAGGGAA,Ames19326;ACGTGGTA,PI601457;CCATGGGT,PI601560;CGCGGAGA,PI542958;CGTGTGGT,NSL65874;GCTGTGGA,Ames26765;GGATTGGT,Ames12818;GTGAGGGT,PI608774;TATCGGGA,Ames22030;TTCCTGGA,PI595616;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title