SAMN02086281
External Id
Cornell University
INSDC center name
2013-04-30T11:29:02.527Z
INSDC first public
2013-04-30T21:49:13.877Z
INSDC last update
SRS417500
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS417500
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;CTCC,Ames23481;TGCA,Ames27068;ACTA,Ames22048;CAGA,NSL81600;AACT,Ames23437;GCGT,Ames24750;TGCGA,Ames23409;CGAT,PI531082;CGCTT,PI593460;TCACC,PI340843;CTAGC,Ames28422;ACAAA,PI601562;TTCTC,NSL30063;AGCCC,PI340826;GTATT,Ames24726;CTGTA,Ames24713;ACCGT,PI391670;GTAA,PI601558;GGTTGT,PI538236;CCAGCT,Ames22058;TTCAGA,Ames23393;TAGGAA,NSL438019;GCTCTA,PI606768;CCACAA,NSL67789;GCTTA,Ames23494;CTTCCA,PI200195;GAGATA,Ames24722;ATGCCT,Ames27119;TATTTTT,PI533658;CTTGCTT,Ames23419;ATGAAAC,Ames23451;AAAAGTT,PI303938;GAATTCA,Ames23499;GAACTTC,CIze49;GGACCTA,PI340850;GTCGATT,Ames28986;AACGCCT,PI601778;AATATGC,PI595366;ACGACTAC,Ames23428;GGTGT,Ames24749;TAGCATGC,Ames19311;AGTGGA,Ames23397;TAGGCCAT,PI233323;TGCAAGGA,blank;TGGTACGT,Ames23408;TCTCAGTC,Ames26120;CCGGATAT,PI198905;CGCCTTAT,Ames28983;AGGC,B73;GATC,Ames23427;TCAC,PI358526;AGGAT,Ames23504;ATTGA,PI340829;CATCT,PI583774;CCTAC,Ames23429;GAGGA,PI608768;GGAAC,CIze91;GTCAA,CIze45;TAATA,Ames22042;TACAT,NSL438023;TCGTT,PI520771;ACCTAA,Ames22792;ATATGT,Ames24736;ATCGTA,Ames22053;CATCGT,Ames28290;CGCGGT,PI340820;CTATTA,PI587124;GCCAGT,PI508277;GGAAGA,Ames28425;GTACTT,SA24;GTTGAA,NSL437960;TAACGA,PI340873;TGGCTA,NSL30054;ACGTGTT,Ames27017;ATTAATT,Ames23498;ATTGGAT,Ames23492;CATAAGT,NSL30070;CGCTGAT,PI610493;CGGTAGA,Ames24721;CTACGGA,Ames22793;GCGGAAT,Ames26781;TAGCGGA,NSL437994;TCGAAGA,Ames28931;TCTGTGA,NSL437877;TGCTGGA,Ames23394;AACCGAGA,Ames23410;ACAGGGAA,Ames22066;ACGTGGTA,Ames22034;CCATGGGT,PI587129;CGCGGAGA,NSL81596;CGTGTGGT,Ames22061;GCTGTGGA,PI538239;GGATTGGT,CIze86;GTGAGGGT,PI594048;TATCGGGA,Ames26125;TTCCTGGA,Ames19001;)
description
Zea mays
http://purl.obolibrary.org/obo/NCBITaxon_4577
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Zea mays
title