SAMN01991085
External Id
Plant Protection Research Institute, Guangdong Academy of Agricultural Science, P. R. China
INSDC center name
2013-12-13T00:00:00Z
INSDC first public
2021-02-28T02:05:07.655Z
INSDC last update
SRS404340
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS404340
SRA accession
6-4-1
alternate id
Tropical fruits
biome
2009-09
collection date
Dickeya zeae strain MS1 is the causal bacterium of banana bacterial soft rot. The disease was characterized by an odorous soft rot of the center of the rhizome. The rot progressed up the pseudostem, destroying the growing point and causing internal decay, and often accompanied by vascular discoloration. However it shows specific gray thallus in culturing compared with other Dickeya pathogens, and is short of the phytotoxin against a range of bacterial pathogens compared with other D. zeae strains. The purpose of this study is to sequence the whole genome to understand the epidemiology and comparative genomics of this pathogen with other Dickeya strains.
description
Bacterial soft rot
disease
Vascular discoloration
disease_stage
China: Guangzhou
geo loc name
pseudostem of banana affected by bacterial soft rot
isolation source
Dickeya zeae MS1
http://purl.obolibrary.org/obo/NCBITaxon_1308956
organism
Culture
sample type
Banana
specific host
MS1
http://www.ebi.ac.uk/efo/EFO_0002836
strain
Dickeya zeae strain MS1 isolate 6-4-1
title