SAMN02116947
External Id
Cornell University
INSDC center name
2013-05-03T12:23:49.960Z
INSDC first public
2013-05-05T23:00:15.867Z
INSDC last update
SRS418520
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
SRS418520
SRA accession
This sample is a Genotyping-by-sequencing library with pooled individuals as described in http://www.maizegenetics.net/Table/Genotyping-By-Sequencing/. The restriction enzyme used for this library is ApeKI. Mapping between GBS barcodes and samples: (CTCC,SW790.07;TGCA,SW58.10;ACTA,Shelter.09;CAGA,SW790.02;AACT,Pathfinder.09;GCGT,ECS-2.07;TGCGA,SW788.08;CGAT,SW123.02;CGCTT,Dacotah.01;TCACC,SW787.01;CTAGC,SWG39.06;ACAAA,SW129.06;TTCTC,SWG32.03;AGCCC,SW116.05;GTATT,Shelter.02;CTGTA,KY1625.06;ACCGT,SW50.06;GTAA,SW65.06;GGTTGT,SW789.08;CCAGCT,Blackwell.07;TTCAGA,Cave-in-Rock.10;TAGGAA,SW58.07;GCTCTA,SW31.01;CCACAA,Pathfinder.02;GCTTA,SW40.10;CTTCCA,SW38.05;GAGATA,High Tide.07;ATGCCT,Kanlow.02;TATTTTT,SW109.02;CTTGCTT,SW49.07;ATGAAAC,SW128.05;AAAAGTT,SW805.06;GAATTCA,SW31.09;GAACTTC,SW786.01;GGACCTA,Carthage.03;GTCGATT,SW127.05;AACGCCT,WS4U.02;AATATGC,ECS-10.03;ACGACTAC,SW782.01;GGTGT,ECS-10.09;TAGCATGC,SW788.07;AGTGGA,SW115.04;TAGGCCAT,SW109.04;TGCAAGGA,SW799.10;TGGTACGT,SW110.05;TCTCAGTC,SW808.10;CCGGATAT,SW789.06;CGCCTTAT,SW127.09;AGGC,SW788.06;GATC,SW798.10;TCAC,SW124.09;AGGAT,blank;ATTGA,SW63.03;CATCT,SW127.06;CCTAC,SW33.02;GAGGA,SW786.06;GGAAC,ECS-12.06;GTCAA,SW808.06;TAATA,SW33.04;TACAT,ECS-12.03;TCGTT,SW782.08;ACCTAA,Kanlow.03;ATATGT,SW809.06;ATCGTA,SW805.09;CATCGT,SW58.03;CGCGGT,SW49.05;CTATTA,SW114.02;GCCAGT,SW43.07;GGAAGA,SW795.01;GTACTT,SW781.03;GTTGAA,SW43.05;TAACGA,SW33.03;TGGCTA,Sunburst.01;ACGTGTT,SW782.07;ATTAATT,SW124.06;ATTGGAT,SW128.03;CATAAGT,SW808.05;CGCTGAT,SW809.05;CGGTAGA,Sunburst.09;CTACGGA,SW781.07;GCGGAAT,High Tide.01;TAGCGGA,SW795.08;TCGAAGA,SW114.06;TCTGTGA,SW129.07;TGCTGGA,WS98-SB.10;AACCGAGA,WS4U.10;ACAGGGAA,SW809.07;ACGTGGTA,Pathfinder.06;CCATGGGT,SW787.04;CGCGGAGA,SW782.06;CGTGTGGT,SW805.04;GCTGTGGA,SW102.04;GGATTGGT,SW102.05;GTGAGGGT,Shelter.01;TATCGGGA,KY1625.03;TTCCTGGA,SW65.09;)
description
Panicum virgatum
http://purl.obolibrary.org/obo/NCBITaxon_38727
organism
pooled
http://www.ebi.ac.uk/efo/EFO_0000663
strain
Generic sample from Panicum virgatum
title