SAMD00002573
External Id
Laboratory of Environmental Plant Microbiology, Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University
INSDC center name
2014-01-13T00:00:00Z
INSDC first public
2015-10-12T22:45:30Z
INSDC last update
DRS000509
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
DRS000509
SRA accession
Field metadata., Country: Japan, Latitude: 38-27-39.37' N, Longitude: 141-5-33.33' E, Altitude: 4 m a.s.l., Classification: Gray lowland soil (classification of cultivated soils in Japan, 3rd approximation), Geomorphic Position: Alluvial plain, Slope Characteristics: Flat, Precipitation: Udic soil moisture regime, Water Table Depth: 97 cm, Drainage: Poorly drained, Land Use: Paddy rice field, Parent material: Unconsolidated alluvium, Vegetation: Paddy field after harvest
description
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
General description. Rice plants (Oryza sativa L. cultivar ÂgNipponbareÂh) were cultivated in paddy fields dressed with low N (LN; 0 kg ha-1) and standard N (SN; 30 kg ha-1). The roots (approximately 100 g) were sampled on August 26, 2009 and homogenized without surface sterilization to prepare the root-associated bacterial cells, and the bacterial cells were extracted and purified using a bacterial cell enrichment method. Total DNA was extracted from the cell fraction.
sample comment
DRS000509
sample name
Metagenomic study of root associated-microbiome extracted from rice cultivated in paddy fields dressed with low nitrogen or standard nitrogen.
title