SAMN02316578
External Id
PLant Energy Biology
INSDC center name
2014-09-14T00:00:00Z
INSDC first public
2019-06-20T16:36:05.250Z
INSDC last update
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
Nipponbare
http://www.ebi.ac.uk/efo/EFO_0007587
cultivar
Cufflinks was run is the discovery mode, allowing discovery of novel genes, as described in Trapnell et al. 2012 (Trapnell et al., 2012). For this purpose, only reads corresponding to samples originating from the 21 d time point (+Pi and -Pi) were used. Novel assemblies were then merged using Cuffmerge, using the MSU v7 gene model annotation file as the reference annotation, resulting in a new transcript assembly, used to quantify transcript abundance.
description
21d
dev stage
Oryza sativa Japonica Group
http://purl.obolibrary.org/obo/NCBITaxon_39947
organism
General Sample for Oryza sativa
title