142
Bacteria_OTU R1
72
Bacteria_OTU R2
1
DNA input 16S RXN (ng)
SAMN06276652
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:28.057Z
INSDC first public
2017-01-30T15:16:16.680Z
INSDC last update
SRS1948989
INSDC secondary accession
live
INSDC status
298 / 240
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
140913
Original_paired_Read
80341
Qualified_paired_Read
70
Rxn Conditiond
25
Rxn Vol (uL)
SRS1948989
SRA accession
1
Sequence Pool
504
Total 16S amplified (ng)
151
Total_OTU R1
89
Total_OTU R2
128,132
Trimmomatic_read R1
81,726
Trimmomatic_read R2
80341
Trimmomatic_read(R1 / R2)
ACCATACTGGGT
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
Chem
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
4
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title