SAMN06451007
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:14:33.082Z
INSDC last update
SRS2038462
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2038462
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
94.09%
completeness_estimated
3.86%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX806416 metagenome.
description
true
environmental sample
82.58
genome coverage
Singapore
geo loc name
UBA5702
isolate
sediments
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
sediment metagenome
metagenome source
true
metagenomic
Nitrospira sp. UBA5702
http://purl.obolibrary.org/obo/NCBITaxon_1946991
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX806416 metagenome
subsrc_note
Uncultivated Nitrospira sp. UBA5702 genome recovered from SRX806416
title
This BioSample is a metagenomic assembly obtained from the sediment metagenome reads: SRR1706179.
value