27
Bacteria_OTU R1
5
Bacteria_OTU R2
0.016
DNA input 16S RXN (ng)
SAMN06276615
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:30.380Z
INSDC first public
2017-01-30T15:17:22.310Z
INSDC last update
SRS1949028
INSDC secondary accession
live
INSDC status
280 / 232
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
128293
Original_paired_Read
3622
Qualified_paired_Read
69TD
Rxn Conditiond
50
Rxn Vol (uL)
SRS1949028
SRA accession
2
Sequence Pool
140.8
Total 16S amplified (ng)
27
Total_OTU R1
5
Total_OTU R2
67,182
Trimmomatic_read R1
3,993
Trimmomatic_read R2
3622
Trimmomatic_read(R1 / R2)
GTACGGCATACG
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
MoBio
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
2
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title