SAMN06456995
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:03:33.529Z
INSDC last update
SRS2038511
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2038511
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
93.71%
completeness_estimated
0.75%
http://purl.obolibrary.org/obo/CHEBI_15866
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX822099 metagenome.
description
true
environmental sample
17.72
genome coverage
USA:New York City
geo loc name
UBA1638
isolate
plastic
http://www.ebi.ac.uk/efo/EFO_0009642
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
Streptococcus suis
http://purl.obolibrary.org/obo/NCBITaxon_1307
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX822099 metagenome
subsrc_note
Uncultivated Streptococcus suis UBA1638 genome recovered from SRX822099
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748672.
value