110
Bacteria_OTU R1
60
Bacteria_OTU R2
0.4
DNA input 16S RXN (ng)
SAMN06276581
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:19.620Z
INSDC first public
2017-01-30T15:17:30.230Z
INSDC last update
SRS1949061
INSDC secondary accession
live
INSDC status
298 / 240
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
66263
Original_paired_Read
34989
Qualified_paired_Read
69TD
Rxn Conditiond
50
Rxn Vol (uL)
SRS1949061
SRA accession
1
Sequence Pool
3616
Total 16S amplified (ng)
116
Total_OTU R1
75
Total_OTU R2
57,297
Trimmomatic_read R1
35,547
Trimmomatic_read R2
34989
Trimmomatic_read(R1 / R2)
TCAGAATACCTC
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
MoBio
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
1
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title