SAMN06457840
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:04:41.909Z
INSDC last update
SRS2034123
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2034123
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
86.86%
http://www.ebi.ac.uk/efo/EFO_0006494
completeness_estimated
0.14%
http://purl.obolibrary.org/obo/CHEBI_2948
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX514548 metagenome.
description
true
environmental sample
20.11
genome coverage
UBA5952
isolate
water
http://purl.obolibrary.org/obo/CHEBI_15377
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
marine metagenome
metagenome source
true
metagenomic
Rhodobiaceae bacterium UBA5952
http://purl.obolibrary.org/obo/NCBITaxon_1952828
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX514548 metagenome
subsrc_note
Uncultivated Rhodobiaceae bacterium UBA5952 genome recovered from SRX514548
title
This BioSample is a metagenomic assembly obtained from the marine metagenome reads: SRR1230755.
value