SAMN06453133
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:16:59.629Z
INSDC last update
SRS2034911
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2034911
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
71.05%
completeness_estimated
1.75%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX823423 metagenome.
description
true
environmental sample
42.2
genome coverage
USA:New York City
geo loc name
UBA6315
isolate
wood
http://purl.obolibrary.org/obo/PO_0005352
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
Pseudomonas sp. UBA6315
http://purl.obolibrary.org/obo/NCBITaxon_1947328
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX823423 metagenome
subsrc_note
Uncultivated Pseudomonas sp. UBA6315 genome recovered from SRX823423
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1750040.
value