SAMN06454938
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:21:05.306Z
INSDC last update
SRS2034127
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2034127
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
95.15%
completeness_estimated
0.95%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX516605 metagenome.
description
true
environmental sample
9.49
genome coverage
Germany: South-West Germany
geo loc name
UBA2090
isolate
water
http://purl.obolibrary.org/obo/CHEBI_15377
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
wastewater metagenome
metagenome source
true
metagenomic
Atopobium sp. UBA2090
http://purl.obolibrary.org/obo/NCBITaxon_1946066
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX516605 metagenome
subsrc_note
Uncultivated Atopobium sp. UBA2090 genome recovered from SRX516605
title
This BioSample is a metagenomic assembly obtained from the wastewater metagenome reads: SRR1237780.
value