SAMN06450793
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
SRS2038692
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS2038692
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
99.02%
completeness_estimated
0.25%
http://purl.obolibrary.org/obo/CHEBI_17790
contamination_estimated
true
environmental sample
161.85
genome coverage
USA:New York City
geo loc name
UBA5979
isolate
metal
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
Originally submitted as Chryseobacterium indologenes but changed in October 2018 because of ANI results to Chryseobacterium arthrosphaerae
note
Chryseobacterium arthrosphaerae
http://purl.obolibrary.org/obo/NCBITaxon_651561
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX822271 metagenome
subsrc_note
Uncultivated Chryseobacterium indologenes UBA5979 genome recovered from SRX822271
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1748888.
value