SAMN06453225
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
SRS2030425
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS2030425
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
97.53%
completeness_estimated
1.72%
contamination_estimated
true
environmental sample
42.33
genome coverage
UBA3401
isolate
digestive tract (UBERON:0001555); intestine (UBERON:0000160)
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
mouse gut metagenome
metagenome source
true
metagenomic
Lachnospiraceae bacterium UBA3401
http://purl.obolibrary.org/obo/NCBITaxon_1952033
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in ERX166945 metagenome
subsrc_note
Uncultivated Lachnospiraceae bacterium UBA3401 genome recovered from ERX166945
title
This BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: ERR192256.
value