SAMN06455441
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
SRS2039272
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS2039272
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
91.23%
completeness_estimated
3.52%
contamination_estimated
true
environmental sample
144.5
genome coverage
USA:New York City
geo loc name
UBA6825
isolate
New York City MTA subway
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX822920 metagenome
subsrc_note
Uncultivated Pseudomonas nitroreducens UBA6825 genome recovered from SRX822920
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749537.
value