SAMN06456239
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T12:58:33.849Z
INSDC last update
SRS2035533
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2035533
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
91.88%
completeness_estimated
1.28%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX648503 metagenome.
description
true
environmental sample
8.44
genome coverage
Mexico: oxygen minimum zone off the coast of Manzanillo
geo loc name
UBA3125
isolate
water
http://purl.obolibrary.org/obo/CHEBI_15377
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
marine metagenome
metagenome source
true
metagenomic
Candidatus Microthrix sp. UBA3125
http://purl.obolibrary.org/obo/NCBITaxon_1946176
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX648503 metagenome
subsrc_note
Uncultivated Candidatus Microthrix sp. UBA3125 genome recovered from SRX648503
title
This BioSample is a metagenomic assembly obtained from the marine metagenome reads: SRR1509800.
value