SAMN06451670
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:15:33.973Z
INSDC last update
SRS2032041
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2032041
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
96.05%
completeness_estimated
0.52%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX1044557 metagenome.
description
true
environmental sample
349.27
genome coverage
Atlantic Ocean:Mid Cayman Rise
geo loc name
UBA2015
isolate
Beebe hydrothermal vent plume at depth 4869m
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
hydrothermal vent metagenome
metagenome source
true
metagenomic
Pseudomonadaceae bacterium UBA2015
http://purl.obolibrary.org/obo/NCBITaxon_1952772
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX1044557 metagenome
subsrc_note
Uncultivated Pseudomonadaceae bacterium UBA2015 genome recovered from SRX1044557
title
This BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome reads: SRR2046238.
value