SAMN06456572
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:03:29.684Z
INSDC last update
SRS2031958
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2031958
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
86.02%
completeness_estimated
0.71%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX035182 metagenome.
description
true
environmental sample
82
genome coverage
UBA1191
http://www.ebi.ac.uk/efo/EFO_0007874
isolate
Switch grass fiber attached community in cow rumen, 72 hour post incubation
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
bovine gut metagenome
metagenome source
true
metagenomic
Firmicutes bacterium UBA1191
http://purl.obolibrary.org/obo/NCBITaxon_1947933
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX035182 metagenome
subsrc_note
Uncultivated Firmicutes bacterium UBA1191 genome recovered from SRX035182
title
This BioSample is a metagenomic assembly obtained from the bovine gut metagenome reads: SRR094926,SRR094429,SRR094437.
value