SAMN06453231
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
SRS2030420
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS2030420
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
57.26%
completeness_estimated
1.28%
contamination_estimated
true
environmental sample
7.62
genome coverage
UBA3407
isolate
digestive tract (UBERON:0001555); intestine (UBERON:0000160)
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
mouse gut metagenome
metagenome source
true
metagenomic
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in ERX166941 metagenome
subsrc_note
Uncultivated Helicobacter sp. UBA3407 genome recovered from ERX166941
title
This BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: ERR192252.
value