SAMN06452969
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:16:55.055Z
INSDC last update
SRS2032687
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2032687
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
75.39%
completeness_estimated
0.08%
http://purl.obolibrary.org/obo/CHEBI_28748
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX252167 metagenome.
description
true
environmental sample
8.84
genome coverage
United Kingdom: England
geo loc name
UBA1827
isolate
Cecal contents
http://purl.jp/bio/11/meo/MEO_0000970
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
chicken gut metagenome
metagenome source
true
metagenomic
Collinsella sp. UBA1827
http://purl.obolibrary.org/obo/NCBITaxon_1946386
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX252167 metagenome
subsrc_note
Uncultivated Collinsella sp. UBA1827 genome recovered from SRX252167
title
This BioSample is a metagenomic assembly obtained from the chicken gut metagenome reads: SRR789046.
value