SAMN06453160
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
SRS2032204
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
SRS2032204
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
97.67%
completeness_estimated
5.53%
contamination_estimated
true
environmental sample
15.41
genome coverage
China: Jiangsu province
geo loc name
UBA709
isolate
mouse intestine 0group
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
mouse gut metagenome
metagenome source
true
metagenomic
Helicobacter typhlonius
http://purl.obolibrary.org/obo/NCBITaxon_76936
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX1166928 metagenome
subsrc_note
Uncultivated Helicobacter typhlonius UBA709 genome recovered from SRX1166928
title
This BioSample is a metagenomic assembly obtained from the mouse gut metagenome reads: SRR2190826.
value