SAMN06452316
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:15:51.241Z
INSDC last update
SRS2033191
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2033191
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
93.19%
completeness_estimated
3.22%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX290720 metagenome.
description
true
environmental sample
13.35
genome coverage
UBA3224
isolate
high methane producing sheep
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
gut metagenome
metagenome source
true
metagenomic
Treponema sp. UBA3224
http://purl.obolibrary.org/obo/NCBITaxon_1947710
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX290720 metagenome
subsrc_note
Uncultivated Treponema sp. UBA3224 genome recovered from SRX290720
title
This BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR873610.
value