SAMN06454993
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:21:06.762Z
INSDC last update
SRS2031904
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2031904
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
51.49%
completeness_estimated
0.00%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX035182 metagenome.
description
true
environmental sample
30.6
genome coverage
UBA1222
isolate
Switch grass fiber attached community in cow rumen, 72 hour post incubation
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
bovine gut metagenome
metagenome source
true
metagenomic
Dehalococcoidia bacterium UBA1222
http://purl.obolibrary.org/obo/NCBITaxon_1948473
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX035182 metagenome
subsrc_note
Uncultivated Dehalococcoidia bacterium UBA1222 genome recovered from SRX035182
title
This BioSample is a metagenomic assembly obtained from the bovine gut metagenome reads: SRR094926,SRR094429,SRR094437.
value