37
Bacteria_OTU R1
10
Bacteria_OTU R2
0.08
DNA input 16S RXN (ng)
SAMN06276642
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:22.123Z
INSDC first public
2017-01-30T15:17:16.027Z
INSDC last update
SRS1948998
INSDC secondary accession
live
INSDC status
290 / 232
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
98694
Original_paired_Read
5007
Qualified_paired_Read
70
Rxn Conditiond
50
Rxn Vol (uL)
SRS1948998
SRA accession
2
Sequence Pool
27
Total 16S amplified (ng)
37
Total_OTU R1
11
Total_OTU R2
46,919
Trimmomatic_read R1
5,238
Trimmomatic_read R2
5007
Trimmomatic_read(R1 / R2)
CAGCTGTTGAAC
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
Chem
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
3
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title