SAMN06452899
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:16:53.117Z
INSDC last update
SRS2035178
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2035178
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
81.21%
completeness_estimated
1.25%
http://purl.obolibrary.org/obo/CHEBI_25675
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX834637 metagenome.
description
true
environmental sample
23.32
genome coverage
Kenya
geo loc name
UBA6889
isolate
feces
http://purl.obolibrary.org/obo/NCIT_C13234
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
gut metagenome
metagenome source
true
metagenomic
Bifidobacterium sp. UBA6889
http://purl.obolibrary.org/obo/NCBITaxon_1946110
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX834637 metagenome
subsrc_note
Uncultivated Bifidobacterium sp. UBA6889 genome recovered from SRX834637
title
This BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1747036.
value