3235.2
16S_copies
SAMN06342610
External Id
no
GERD
University of Minnesota
INSDC center name
2017-02-19T00:00:00Z
INSDC first public
2021-04-21T08:21:50.069Z
INSDC last update
SRS1984474
INSDC secondary accession
live
INSDC status
MIMARKS.specimen.human-associated.5.0
NCBI submission package
yes
Prior_FESS
50
SNOT20_total
SRS1984474
SRA accession
no
allergies
1
antibiotic_azithromycin
0
antibiotic_bactrim
0
antibiotic_cayston
0
antibiotic_ciprofloxacin
0
antibiotic_clindamycin
0
antibiotic_colistin
0
antibiotic_colymycin
0
antibiotic_doxycycline
0
antibiotic_gentamicin
0
antibiotic_levofloxacin
1
antibiotic_meropenem
4
antibiotic_number
Vancomycin, Micafungin
antibiotic_other
1
antibiotic_tobramycin
0
antibiotic_zosyn
no
asthma
2015-06-04
collection date
no clinical cultures from surgery
culture_comments
sputum expectorated from patient lung prior to FESS
description
human respiratory system
env biome
lung
http://purl.obolibrary.org/obo/UBERON_0002048
env feature
mucus
http://purl.obolibrary.org/obo/UBERON_0002306
env_material
18
fef_25_75_percent
3.68
fef_25_75_predicted
60
fef_max_percent
6.71
fef_max_predicted
3.16
fev1
87
fev1_fvc
37
fev1_percent
2.8
fif_max_predicted
3.56
fvc
47
fvc_percent
USA: Minnesota, Minneapolis
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
19
host age
cystic fibrosis
http://www.orpha.net/ORDO/Orphanet_586
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
1087
host subject id
44.9740 N 93.2277 W
lat lon
0
medi_hypertonic_saline
0
medi_steroid_inhaled
0
medi_steroid_irrigation
respiratory tract metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1850221
organism
2014-11-24
pft_date
no
polypoid_change
no
polyps
MoBio Powersoil
samp mat process
Sputocol
samp_collect_device
201601273
samp_store_loc
-80C
samp_store_temp
0.3
samp_vol_we_dna_ext
Yes
sample_purulence
no
smoker
1
steroid_fluticasone
0
steroid_prednisone
Bacteria
http://purl.obolibrary.org/obo/NCBITaxon_2
strain
7
title