SAMN06241450
External Id
Agroscope
INSDC center name
2019-12-31T00:00:00Z
INSDC first public
2021-02-28T03:58:17.085Z
INSDC last update
SRS1929109
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS1929109
SRA accession
2012-10
collection date
This study aims at characterizing the impact of the plant microbiome on crop protection against diseases. To this end, the microbiomes of both roots and shoots of field-grown potato plants were isolated, characterized and screened for their protective effects against major potato diseases. A subsample of these bacterial strains, including Pseudomonas species S34, belonging to the genus Pseudomonas, showed volatile-mediated inhibition of the late blight causing agent Phytophthora infestans. Comparative genomics on Pseudomonas strains differing in their impact on P. infestans shall provide insight into the molecular determinants underlying the protective effect of the potato microbiome against late blight and open new ways for sustainable crop protection.
description
the total above-ground portions of plants which is a habitat for microorganisms
env biome
above-soil plant parts
env feature
Switzerland: Zurich
geo loc name
Solanum tuberosum
http://purl.obolibrary.org/obo/NCBITaxon_4113
host
phyllosphere
http://purl.obolibrary.org/obo/NCBITaxon_662107
isolation source
47.428808 N 8.516594 E
lat lon
Pseudomonas sp. S34
http://purl.obolibrary.org/obo/NCBITaxon_1573718
organism
whole organism
http://purl.obolibrary.org/obo/UBERON_0000468
sample type
S34
strain
Pseudomonas species S34 isolated from potato phyllosphere
title