SAMN06453039
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:16:57.006Z
INSDC last update
SRS2038934
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2038934
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
99.84%
completeness_estimated
0.48%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX822475 metagenome.
description
true
environmental sample
23.17
genome coverage
USA:New York City
geo loc name
UBA5996
isolate
wood
http://purl.obolibrary.org/obo/PO_0005352
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
Sphingobacterium sp. UBA5996
http://purl.obolibrary.org/obo/NCBITaxon_1947505
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX822475 metagenome
subsrc_note
Uncultivated Sphingobacterium sp. UBA5996 genome recovered from SRX822475
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749092.
value