SAMN06454758
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:21:00.568Z
INSDC last update
SRS2031888
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2031888
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
83.19%
completeness_estimated
1.68%
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX035182 metagenome.
description
true
environmental sample
47.96
genome coverage
UBA1209
isolate
Switch grass fiber attached community in cow rumen, 72 hour post incubation
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
bovine gut metagenome
metagenome source
true
metagenomic
bacterium UBP6_UBA1209
http://purl.obolibrary.org/obo/NCBITaxon_1953438
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX035182 metagenome
subsrc_note
Uncultivated bacterium UBP6_UBA1209 genome recovered from SRX035182
title
This BioSample is a metagenomic assembly obtained from the bovine gut metagenome reads: SRR094926,SRR094429,SRR094437.
value