182
Bacteria_OTU R1
72
Bacteria_OTU R2
10
DNA input 16S RXN (ng)
SAMN06276611
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:32.867Z
INSDC first public
2017-01-30T15:17:22.500Z
INSDC last update
SRS1949029
INSDC secondary accession
live
INSDC status
298 / 240
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
189403
Original_paired_Read
98730
Qualified_paired_Read
69TD
Rxn Conditiond
50
Rxn Vol (uL)
SRS1949029
SRA accession
1
Sequence Pool
3120
Total 16S amplified (ng)
195
Total_OTU R1
92
Total_OTU R2
171,601
Trimmomatic_read R1
100,276
Trimmomatic_read R2
98730
Trimmomatic_read(R1 / R2)
AACCAGGATGCC
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
MoBio
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
2
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title