SAMN06452216
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:15:48.535Z
INSDC last update
SRS2034710
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2034710
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
96.35%
completeness_estimated
1.04%
http://purl.obolibrary.org/obo/PO_0007115
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX823218 metagenome.
description
true
environmental sample
155.67
genome coverage
USA:New York City
geo loc name
UBA6753
isolate
plastic
http://www.ebi.ac.uk/efo/EFO_0009642
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
terrestrial metagenome
metagenome source
true
metagenomic
Pseudomonas sp. UBA6753
http://purl.obolibrary.org/obo/NCBITaxon_1947336
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX823218 metagenome
subsrc_note
Uncultivated Pseudomonas sp. UBA6753 genome recovered from SRX823218
title
This BioSample is a metagenomic assembly obtained from the terrestrial metagenome reads: SRR1749835.
value