43
Bacteria_OTU R1
12
Bacteria_OTU R2
0.0032
DNA input 16S RXN (ng)
SAMN06276630
External Id
Mayo Clinic
INSDC center name
2017-01-30T15:04:34.487Z
INSDC first public
2017-01-30T15:17:18.437Z
INSDC last update
SRS1949010
INSDC secondary accession
live
INSDC status
290 / 232
Median_length(R1 / R2)
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.human-associated.5.0
NCBI submission package
NGSLBP-1429602
NGS Project Id
919628
Original_paired_Read
16054
Qualified_paired_Read
69TD
Rxn Conditiond
50
Rxn Vol (uL)
SRS1949010
SRA accession
2
Sequence Pool
23.52
Total 16S amplified (ng)
54
Total_OTU R1
19
Total_OTU R2
142,272
Trimmomatic_read R1
16,922
Trimmomatic_read R2
16054
Trimmomatic_read(R1 / R2)
GGAGCATTCTAC
barcode sequence
2014
collection date
Keywords: GSC:MIxS;MIMARKS:5.0
description
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env biome
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env feature
stool
http://www.ebi.ac.uk/efo/EFO_0007874
env_material
Chem
extraction method
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408170
organism
BiomeQC
patient id
2
pcr plate
2
sample replicate
6
speed
40
time (s)
MIMARKS Survey related sample from human gut metagenome
title