SAMN06451434
External Id
University of Queensland
INSDC center name
2017-02-27T00:00:00Z
INSDC first public
2017-08-15T13:15:27.723Z
INSDC last update
SRS2032271
INSDC secondary accession
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
SRS2032271
SRA accession
CLC de novo assembler
assembly method
4.4.1
assembly_method_version
86.08%
completeness_estimated
4.53%
http://purl.obolibrary.org/obo/CHEBI_16236
contamination_estimated
Uncultivated genome recovered from an assembly of the SRX1363838 metagenome.
description
true
environmental sample
10.92
genome coverage
Colombia: Santander de Quilichao
geo loc name
UBA5810
isolate
cassava fermentation tank
isolation-source
BWA (BWA-MEM)
mapping_method
0.7.12-r1039
mapping_method_version
fermentation metagenome
metagenome source
true
metagenomic
Lactobacillaceae bacterium UBA5810
http://purl.obolibrary.org/obo/NCBITaxon_1952194
organism
CheckM
quality_assessment_method
1.0.6
quality_assessment_method_version
metagenomic assembly
sample type
Genome binned from sequencing reads available in SRX1363838 metagenome
subsrc_note
Uncultivated Lactobacillaceae bacterium UBA5810 genome recovered from SRX1363838
title
This BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR2753157.
value