SAMD00115485
External Id
Environmental risk management and quality control technology lab, Department of Urban Engineering, School of Engineering, The University of Tokyo
INSDC center name
2018-04-09T00:00:00Z
INSDC first public
2018-04-09T09:08:26Z
INSDC last update
DRS061372
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
DRS061372
SRA accession
Environmental Risk Management and Quality Control Technology Lab, The University of Tokyo
biomaterial provider
2018-02-11
collection date
The estuarine and marine amphipod Grandidierella japonica has been used for sediment toxicity assessments. To understand the toxic mechanisms of road runoff, we performed de novo transcriptome analysis of G. japonica exposed to the dust deposited on road surfaces for 4 days. Transcriptome sequencing was performed by using TruSeq RNA Sample Prep Kit v2 and Illumina Hiseq 2500. Adapter sequences and low quality bases were removed by using Trimmomatic (ver. 0.36). This sample (GJAP1804011) corresponds to the RNA sample of the amphipod under control condition (replicate #1).
description
juvenile
http://purl.obolibrary.org/obo/UBERON_0000112
dev stage
aquatic biome [ENVO_00002030]
env biome
tidal mudflat [ENVO_00000241]
env feature
water
http://purl.obolibrary.org/obo/CHEBI_15377
env_material
Japan:Tokyo
geo loc name
control
http://www.ebi.ac.uk/efo/EFO_0001461
health_state
10.2166/wst.2015.304
isol_growth_condt
35.712778 N 139.761944 E
lat lon
Grandidierella japonica
http://purl.obolibrary.org/obo/NCBITaxon_429032
organism
sexual
propagation
biological replicate 1
replicate
GJAP1804011
sample name
whole body
http://purl.obolibrary.org/obo/BTO_0001489
tissue type
Grandidierella japonica transcriptome control-01 20180401
title