SAMD00127335
External Id
DGT, CLST, RIKEN
INSDC center name
2018-06-07T00:00:00Z
INSDC first public
2018-06-07T04:12:23Z
INSDC last update
DRS071592
INSDC secondary accession
live
INSDC status
Generic
NCBI submission model
Generic.1.0
NCBI submission package
DRS071592
SRA accession
This BioSample is a pool of the BioSample SAMD00109635 to SAMD00109656. It was created for the purpose of providing raw (non-demultiplexed) sequence files related to these samples, to allow for recovering unique molecular identifier sequences, which are lost during the process of de-multiplexing and data deposition. The first 6 bases in READ1 are a barcode, identifying BioSamples as follows. ACATGA: SAMD00109651 (LTD_1h_9P); AGTAGC: SAMD00109644 (ctrl_1h_1P); ATCATA: SAMD00109653 (LTD_amanitin_10P); ATCGCA: SAMD00109645 (ctrl_1h_2P); ATCGTG: SAMD00109640 (Amanitin_1h_6Sn); CACGAT: SAMD00109648 (LTD_1h_7Sn); CACGTG: SAMD00109655 (LTD_amanitin_11P); CACTCT: SAMD00109646 (ctrl_1h_3P); CACTGA: SAMD00109650 (LTD_1h_8Sn); CGATGA: SAMD00109641 (control_1h_1Sn); CTGAGC: SAMD00109635 (Amanitin_1h_4P); GAGATA: SAMD00109642 (control_1h_2Sn); GAGCGT: SAMD00109637 (Amanitin_1h_5P); GAGTGA: SAMD00109652 (LTD_1h_9Sn); GCTCTC: SAMD00109643 (control_1h_3Sn); GCTGCA: SAMD00109639 (Amanitin_1h_6P); GTATAC: SAMD00109654 (LTD_amanitin_10Sn); GTATGA: SAMD00109636 (Amanitin_1h_4Sn); TATAGC: SAMD00109647 (LTD_1h_7P); TCGAGC: SAMD00109656 (LTD_amanitin_11Sn); TCGATA: SAMD00109638 (Amanitin_1h_5Sn); TCGCGT: SAMD00109649 (LTD_1h_8P). The barcodes are followed 8 random bases (unique molecular identifier) and a TATAGGG linker.
description
Rattus norvegicus
http://purl.obolibrary.org/obo/NCBITaxon_10116
organism
Pooled cerebellar samples
sample name
Wistar
http://www.ebi.ac.uk/efo/EFO_0001342
strain
cerebellum
http://purl.obolibrary.org/obo/UBERON_0002037
tissue type
Pooled samples extracted from rat cerebellar slices, with or without pharmacological treatments or RNA enrichments.
title