SAMN10245980
External Id
The Third Institute of Oceanography, State Oceanic Administration
INSDC center name
2018-10-16T00:00:00Z
INSDC first public
2021-02-28T06:27:32.484Z
INSDC last update
SRS3943010
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS3943010
SRA accession
2012-06
collection date
The shrimp Rimicaris exoculata living in the deep-sea hydrothermal vents hosts a dense epibiontic community of chemoautotrophic bacteria on its enlarged gill chamber. Yet our understanding of the shrimp-epibiont symbiosis is heavily hampered by our inability to cultivate the dominant microbes in the community. Here we use metagenomics and metatranscriptomics on shrimp from the South Mid-Atlantic Ridge, to investigate the metabolic activity of the epibionts affiliated to the Epsilonproteobacteria, Gammaproteobacteria and Deltaproteobacteria.
description
Rimicaris exoculata
host
South Mid-Atlantic Ridge
isolation source
15.17 N 13.36 W
lat lon
epibiont metagenome
http://purl.obolibrary.org/obo/NCBITaxon_408171
organism
epibiontic metatranscriptomics for vent shrimp from the South Mid-Atlantic Ridge
title