SAMN14323023
External Id
Lawrence Berkeley National Lab
INSDC center name
2020-03-06T00:00:00Z
INSDC first public
2020-03-09T15:25:04.162Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.water
NCBI submission model
MIGS.vi
NCBI submission model
MIGS.vi.water.5.0
NCBI submission package
SPAdes; 3.10.1; --phred-offset 33 -t 16 -m 120 --sc --careful -kmer set 25,55,95 --12, default parameters otherwise
assembly software
kmer and coverage
bin_param
concoct
bin_software
2018-06-20
collection date
3.5m
depth
GSB Chlorobiaceae GSB-B phage detected from host targeted metagenome
description
independent sequence (UViG)
detec_type
freshwater lake biom [ENVO:01000252]
env_broad_scale
holomictic lake [ENVO:01000285]
env_local_scale
fresh water [ENVO:00002011]
env_medium
Prodigal; 2.6.3; default parameters
feat_pred
USA:Trout Bog, Vilas County, Wisconsin
geo loc name
other
host_pred_appr
hosts were isolated using flow cytometry, and then metagenome libaries were prepared from those isolated hosts
host_pred_est_acc
metagenome
investigation type
https://www.biorxiv.org/content/10.1101/2020.03.05.979559v1
isol_growth_condt
46.041 N 89.686 W
lat lon
bowtie
mag_cov_software
https://www.biorxiv.org/content/10.1101/2020.03.05.979559v1
nucl_acid_ext
Chlorobiaceae phage CV-1-33
http://purl.obolibrary.org/obo/NCBITaxon_2716170
organism
non-segmented
pred_genome_struc
dsDNA
pred_genome_type
Trout Bog Lake GSB metagenomes
project name
lytic
propagation
no
reassembly_bin
RefSeqABVir; https://peerj.com/articles/985
ref_db
Illumina NovaSeq
seq meth
HMMER3; 3.2.1; hmmsearch, cutoff of 40 on score
sim_search_meth
metagenome (not viral targeted)
source_uvig
CV-1-33
strain
yes
submitted to INSDC
vConTACT vContact2 (references from NCBI RefSeq v93, genus rank classification, default parameters)
tax_class
Viral sample from Chlorobiaceae GSB-B phage CV-1-33
title
VirSorter; 1.0.5; category 2
vir_ident_software
95% ANI, 85% SF, greedy incremental clustering
votu_class_appr
NCBI Viral RefSeq v93
votu_db
blastn; 2.6.0+; e-value cutoff: 0.001
votu_seq_comp_appr
mda based
wga_amp_appr