SAMN14464860
External Id
Rutgers University
INSDC center name
2020-03-27T00:00:00Z
INSDC first public
2021-02-28T09:11:08.371Z
INSDC last update
SRS6386804
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS6386804
SRA accession
2019-07
collection date
Biosample containing sequences from 14 sewer biofilm samples from a simulated environment (annular biofilm reactor). SRA contains the multiplex data, barcode and metadata file of sequences from 14 sewer biofilm samples. Details of the samples are below: Sewer biofilm samples were collected under simulated conditions from PVC and concrete surfaces. The biofilms were submitted to a bleach disinfection treatment. Samples were collected before and after the disinfection to determine the effect of the disinfectant on the prokaryote community. Some samples were treated with propidium monoazide (PMA) to discriminate between living and dead cells, and extracellular DNA. Sample ID code 1 or 3: Biofilm reactor fed with either sewer sediment and synthetic wastewater (1) or fed with wastewater (3) C or P: surface, plastic (P) or Concrete (C) 0 or 10: exposure time to the bleach treatment in minutes + or - : treated or untreated with PMA
description
Sewer Biofilm
isolation source
biofilm metagenome
http://purl.obolibrary.org/obo/NCBITaxon_718308
organism
Extracted using FastDNA spin Kit for soil following manufacturer instruction
samp mat process
Swab scraping from annular biofilm reactor
samp_collect_device
~500uL
samp_size
Metagenome or environmental sample from Microbiome of Sewer Biofilm
title