SAMN14363795
External Id
University of Calgary
INSDC center name
2020-03-12T00:00:00Z
INSDC first public
2021-02-28T09:05:13.880Z
INSDC last update
SRS6307425
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.human-vaginal
NCBI submission model
MIMS.me.human-vaginal.5.0
NCBI submission package
SRS6307425
SRA accession
no hormonal contraception
birth_control
no antibiotics or vaginal meds past 30 days
chem_administration
2009-04
collection date
Keywords: GSC:MIxS;MIMS:5.0
description
Homo sapiens [NCBITaxon:9606]
env_broad_scale
vagina [UBERON:0000996]
env_local_scale
epithelium of vagina [0001344]
env_medium
Black or African American, not Hispanic
ethnicity
USA: Seattle
geo loc name
history of bacterial vaginosis
gynecologic_disord
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
24
host age
clear cervical discharge, white, thin homogeneous vaginal discharge
host body product
bacterial vaginosis
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
FHVM-1
host subject id
vagina
http://purl.obolibrary.org/obo/UBERON_0000996
host_tissue_sampled
no
hysterectomy
47.6055005 N 122.3266208 W
lat lon
Nugent = 10
misc_param
vaginal metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1549736
organism
swab
http://purl.obolibrary.org/obo/NCIT_C17627
samp_collect_device
-80 degree Celsius
samp_store_temp
male
http://purl.obolibrary.org/obo/PATO_0000384
sexual_act
FHVM-1_L1H1
title