SAMN18940643
External Id
CanCOGeN: Canadian Public Health Laboratory SARS-CoV-2 submission group
INSDC center name
2021-04-30T00:00:00Z
INSDC first public
2021-04-30T14:49:12.513Z
INSDC last update
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
Nasopharynx (NP)
anatomical_part
Mount Sinai Hospital
collected by
2020-08-16
collection date
Swab
http://purl.obolibrary.org/obo/NCIT_C17627
collection_device
21.26
diagnostic_rt_qpcr_ct_value_1
23.22
diagnostic_rt_qpcr_ct_value_3
E gene (orf4)
gene_name_1
RdRpgene(nsp12)
gene_name_3
Canada: Ontario
geo loc name
EPI_ISL_876612
gisaid_accession
hCoV-19/Canada/ON-SC0232/2020
gisaid_virus_name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
SARS-CoV-2/human/CAN/ON-SC0232/2020
isolate
Nasopharynx (NP): Swab
isolation source
Not Provided
lat lon
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
Diagnostic testing
purpose_of_sampling
Surveillance testing
purpose_of_sequencing
McMaster University
sequenced_by
mcarthua@mcmaster.ca
submitter_contact_email
Pathogen: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2
title