386
CD4+ T cell counts
0.427937916
CD4/CD8
902
CD8+ T cell counts
illumina adapter and human sequences removed
Data preprocessing
SAMN18699767
External Id
103000
HIV-1 viral load (RT-qPCR)
Institut Pasteur of Shanghai
INSDC center name
2021-04-11T00:00:00Z
INSDC first public
2021-04-12T02:16:29.913Z
INSDC last update
SRS8680811
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS8680811
SRA accession
19
Sample number(uniq)
Paired-end
Sequencing strategy1
2X250bp
Sequencing strategy2
25
age
2019
collection date
HIV-1 infected ART-naïve MSM (CD4>200)
description
China:Shenzhen
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
human blood
isolation source
22.5431 N 114.057 E
lat lon
human blood metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1504969
organism
viral metagenomic
sample material processing
NovaSeq
http://www.ebi.ac.uk/efo/EFO_0008637
sequencing platform
male
http://purl.obolibrary.org/obo/PATO_0000384
sex
HIV-1 infected ART-naïve MSM (CD4>200)
title