White
http://purl.obolibrary.org/obo/HANCESTRO_0005
,host_race
SAMN18980086
External Id
SARS-CoV-2/Human/USA/CA-CDC-STM-000039051/2021
External Id
CDC-OAMD
INSDC center name
2021-05-17T00:53:20.530Z
INSDC first public
2021-05-17T00:53:20.530Z
INSDC last update
SRS8838434
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS8838434
SRA accession
Helix
http://purl.obolibrary.org/obo/HP_0000396
collected by
2021-03-18
collection date
Swabs
http://purl.obolibrary.org/obo/NCIT_C17627
collection method
Swabs
http://purl.obolibrary.org/obo/NCIT_C17627
collection_device
ms2
diagnostic_gene_name_1
n gene
diagnostic_gene_name_2
orf1ab
diagnostic_gene_name_3
s gene
diagnostic_gene_name_4
32.92029953
diagnostic_pcr_Ct_value_1
25.875576019
diagnostic_pcr_Ct_value_2
27.334434509
diagnostic_pcr_Ct_value_3
26.784622192
diagnostic_pcr_Ct_value_4
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_1
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_4
USA: California
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
60
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
Nasal
host_anatomical_part
SARS-CoV-2/Human/USA/CA-CDC-STM-000039051/2021
isolate
nasal
isolation source
B.1.1.519
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
SARS-CoV-2 Genome sequencing and assembly - HELIX
title