White
http://purl.obolibrary.org/obo/HANCESTRO_0005
,host_race
SARS-CoV-2/Human/USA/MI-CDC-STM-000048668/2021
External Id
SAMN18956636
External Id
CDC-OAMD
INSDC center name
2021-05-15T00:50:27.490Z
INSDC first public
2021-05-15T00:50:27.490Z
INSDC last update
SRS8825519
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS8825519
SRA accession
Helix
http://purl.obolibrary.org/obo/HP_0000396
collected by
2021-03-31
collection date
Swabs
http://purl.obolibrary.org/obo/NCIT_C17627
collection method
Swabs
http://purl.obolibrary.org/obo/NCIT_C17627
collection_device
n gene
diagnostic_gene_name_2
orf1ab
diagnostic_gene_name_3
s gene
diagnostic_gene_name_4
22.9521713256836
diagnostic_pcr_Ct_value_2
23.700403213501
diagnostic_pcr_Ct_value_3
23.5239009857178
diagnostic_pcr_Ct_value_4
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_2
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_3
ThermoFisher Taqpath Assay
diagnostic_pcr_protocol_4
USA: Michigan
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
30
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
Nasal
host_anatomical_part
SARS-CoV-2/Human/USA/MI-CDC-STM-000048668/2021
isolate
nasal
isolation source
B.1.526.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
SARS-CoV-2 Genome sequencing and assembly - HELIX
title