SAMN18759881
External Id
University of Minnesota
INSDC center name
2021-08-23T00:00:00Z
INSDC first public
2021-08-23T11:13:02.169Z
INSDC last update
SRS8713856
INSDC secondary accession
live
INSDC status
MIGS.eu
NCBI submission model
MIGS/MIMS/MIMARKS.plant-associated
NCBI submission model
MIGS.eu.plant-associated.5.0
NCBI submission package
SRS8713856
SRA accession
2014-12-01
collection date
Tissue from A. cochlioides infected sugar beet seedlings were collected for RNA extraction with the RNeasy Mini Kit for Plants (Qiagen Inc., Valencia, CA, USA). 2-week old sugar beet seedlings (American Crystal 093RR) were inoculated with 5,000 zoospores per plant, and diseased roots were removed from pots at 1, 3, 5, and 10 days post inoculation (dpi) for RNA extraction, and Illumina sequencing.
description
temperate biome
env_broad_scale
agricultural field
http://purl.obolibrary.org/obo/ENVO_00000114
env_local_scale
agricultural soil
env_medium
USA: Minnesota
geo loc name
Beta vulgaris
http://purl.obolibrary.org/obo/NCBITaxon_161934
host
Soil baiting
isol_growth_condt
103-1
isolate
46.26 N 96.58 W
lat lon
Aphanomyces cochlioides
http://purl.obolibrary.org/obo/NCBITaxon_112091
organism
MIGS Eukaryotic sample from Aphanomyces cochlioides
title