SAMN18681955
External Id
Bangabandhu Sheikh Mujibur Rahman Agricultural University
INSDC center name
2021-04-11T00:00:00Z
INSDC first public
2021-04-11T09:03:06.169Z
INSDC last update
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
2020-10-20
collection date
Recent studies have revealed that the gut microbiome of healthy individuals differ remarkably from gut microbiota of COVID-19 patients. However, no studies have examined the relationships of nasopharyngeal microbial communities among healthy individual, COVID-19 confirmed and recovered patients. We hypothesized the possible dysbiosis of microbiome composition and genomic features in nasopharyngeal samples are associated with different pathophysiological conditions of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) infections. To address this hypothesis, we employed RNASeq analysis of 22 nasopharyngeal samples (including COVID-19 = 8, Recovered = 7 and Healthy = 7) to decipher the microbiome composition, diversities, interrelation, and relevant metabolic functions. These data mapped to 2281 bacterial species showing distinct microbiome dysbiosis (COVID-19>Recovered>Healthy).
description
Bangladesh: Dhaka
geo loc name
Nasopharyngeal swab samples
host
human
http://purl.obolibrary.org/obo/NCBITaxon_9606
isolation source
23.8103 N 90.4125 E
lat lon
human nasopharyngeal metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1131769
organism
Metagenome or environmental sample from SARS-CoV-2 infection reduces commensal nasopharyngeal microbiomes with inclusion of opportunistic pathogens
title