characteristics.text: SAMN22551503
characteristics.characteristic: External Id
characteristics.text: Hainan University
characteristics.characteristic: INSDC center name
characteristics.text: 2021-10-25T00:00:00Z
characteristics.characteristic: INSDC first public
characteristics.text: 2021-10-25T06:35:15.470Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS10705770
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Plant
characteristics.characteristic: NCBI submission model
characteristics.text: Plant.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS10705770
characteristics.characteristic: SRA accession
characteristics.text: 40d
characteristics.characteristic: age
characteristics.text: Ferns play an important role in the system evolution, however the genomes are generally too large, there are few studies on molecular biology. The gametophytes of ferns can survive independently, responsible for sexual reproduction and feeding young sporophytes, and play an important role in alternation of generations. However, the study of gene expression is rarely reported. We selected Adiantum flabellulatum, which has both ornamental and medicinal values and is also an indicator plant of acidic soil, as the research object. The full-length transcriptome sequencing of its gametophytes was carried out by PacBio three-generation sequencing technology. A total of 354 228 transcripts were obtained, and 231 705 coding sequences (CDSs) were predicted, including 5 749 transcription factors (TFs), 2 214 transcription regulators (TRs) and 4 950 protein kinases (PKs). The transcripts annotated by Non-redundant protein (NR), Kyoto encyclopedia of genes and genomes (KEGG), eukaryotic ortholog groups (KOG), Swissprot, protein family (Pfma), Nucleotide Sequence Database (NT) and gene ontology (GO) were 251 501, 197 474, 193 630, 194 639, 195 956, 113 069 and 197 883, respectively. In addition, 138 995 simple sequence repeats (SSRs) and 111 793 long non-coding RNAs (lncRNAs) were obtained. This study can provide reference gene set for subsequent gene expression quantification.
characteristics.characteristic: description
characteristics.text: China
characteristics.characteristic: geo loc name
characteristics.text: Adiantum flabellulatum gametocyte
characteristics.characteristic: isolate
characteristics.text: Adiantum flabellulatum
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_872337
characteristics.characteristic: organism
characteristics.text: gametocyte
characteristics.characteristic: tissue
characteristics.text: Full-length Transcriptome Analysis of Adiantum flabellulatum Gametocyte
characteristics.characteristic: title