SAMN27035830
External Id
Bangladesh Agricultural Research Institute (BARI), and Nextgen Informatics Ltd., Bangladesh
INSDC center name
2022-03-29T00:00:00Z
INSDC first public
2022-03-29T18:48:22.043Z
INSDC last update
SRS12415004
INSDC secondary accession
live
INSDC status
Plant
NCBI submission model
Plant.1.0
NCBI submission package
SRS12415004
SRA accession
Spices Research Center, Bangladesh Agricultural Research Institute (BARI), Shibganj, Bogura, Bangladesh
collected by
2022-02-20
collection date
Onion (Allium cepa L.) a bulbous herb, Allium cepa, of the family Alliaceae and is one of the most important vegetable crops worldwide. The plant is characterized by an edible bulb composed of food storage leaves. To harness the potential of novel bioinformatics and computational biology tools to explore the genome of locally developed BARI piaz-1 (Allium cepa L.) with a view to characterize all important genes and proteins [Developed by Spices Research Center, Bangladesh Agricultural Research Institute (BARI)]. The genomic information generated from this project will be invaluable for future molecular breeding strategies and possible upgradation through genomic selection of this unique breed of Bangladesh. The project has following specific objectives: (i) To develop an annotated reference genome of BARI Piaz-1 (Allium cepa L.) with high sequence coverage (10X) using state-of-the-art next generation sequencing (NGS) approach and other modern computational biology tools (ii) To foster comparative genomics and transcriptomics study (through RNAseq approach) to identify gene(s) associated with economic important traits of BARI Piaz-1 (Allium cepa L.)
description
bolting
dev stage
Bangladesh: Bogura
geo loc name
BARI Piaz-1
isolate
Bulb, leaves and roots
isolation source
24.8584 N 89.3813 E
lat lon
Allium cepa
http://purl.obolibrary.org/obo/NCBITaxon_4679
organism
bulb
tissue
Allium cepa BARI Piaz-1 2022-02-20 Raw Reads 001
title