SAMN27190226
External Id
SARS-CoV-2/Human/USA/IL-CDC-ASC210846968/2022
External Id
CDC-OAMD
INSDC center name
2022-04-02T00:00:00Z
INSDC first public
2022-04-02T03:08:35.862Z
INSDC last update
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
Aegis Sciences Corporation
collected by
2022-03-22
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
21.823902
diagnostic_pcr_Ct_value_1
22.080084
diagnostic_pcr_Ct_value_2
20.661171
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Illinois
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
25
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
Black or African American
http://purl.obolibrary.org/obo/HANCESTRO_0568
host race
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/IL-CDC-ASC210846968/2022
isolate
Nasal - Anterior Nares
isolation source
BA.2
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title