SAMN23402391
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:05.140Z
INSDC first public
2022-04-09T07:19:19.870Z
INSDC last update
SRS12547526
INSDC secondary accession
live
INSDC status
BRA
ISO_country_code
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547526
SRA accession
GCA_022694385.1
assembly_ID
Universidade Federal de Sao Paulo
collected by
2019-09
collection date
2019
collection_year
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with and without urinary tract infection in one single center. The Escherichia coli strain SMG008F2 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F2 from the patient SMG008. The other clones isolated from the rectal swab of the same inpatient are SMG008F1, SMG008F9, SMG008F10, and SMG008F11.
description
Escherichia
genus
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
71
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SMG008F2
isolate
rectal swab
isolation source
gastrointestinal system
isolation_source_category
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O101:H10
serotype
SMG008F2
strain
Escherichia coli strain SMG008F2, isolated from rectal swab of an inpatient with UTI
title