SAMN27402777
External Id
The New Mexico State University Food Safety Laboratory GenomeTrakr submission group
INSDC center name
2022-04-07T00:00:00Z
INSDC first public
2022-04-07T10:51:04.368Z
INSDC last update
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
New Mexico State University - Las Cruces
collected by
2022-01-26
collection date
WW-NMLCEM
collection_site_id
1 L
collection_volume
peg precipitation + ultracentrifugation
concentration_method
qiagen rneasy kit
extraction method
murine norovirus
extraction_control
USA: New Mexico
geo loc name
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project name
public health surveillance community-level
purpose_of_ww_sampling
Community Surveillance for SARS-CoV-2 Variants
purpose_of_ww_sequencing
New Mexico State University - Las Cruces
sequenced_by
SARS-CoV-2 wastewater surveillance
title
crAssphage
ww_endog_control_1
18.45
ww_endog_control_1_conc
RT-qPCR Detection of Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
ww_endog_control_1_protocol
cycles (Ct value)
ww_endog_control_1_units
3800000
ww_flow
40000
ww_population
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NM
http://purl.obolibrary.org/obo/CHEBI_45863
ww_surv_jurisdiction
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww_surv_target_1
Non-detect
ww_surv_target_1_conc
cycles (Ct value)
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
no
ww_surv_target_1_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_1_protocol
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww_surv_target_2
Non-detect
ww_surv_target_2_conc
cycles (Ct value)
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
no
ww_surv_target_2_known_present
20
ww_temperature