SAMN27302073
External Id
University of California, Berkeley
INSDC center name
2022-04-04T00:00:00Z
INSDC first public
2022-04-08T09:52:48.440Z
INSDC last update
SRS12504027
INSDC secondary accession
live
INSDC status
Human
NCBI submission model
Human.1.0
NCBI submission package
SRS12504027
SRA accession
Coriell Institute, Camden, NJ
biomaterial provider
HG002
cell line
rabbit anti CENP-A (Carroll et al 2009)
characteristics: antibody
Guppy software (v4.5.4), using a Rerio res_dna_r941_min_modbases-all-context_v001.cfg basecalling model + Winnowmap (v2.03)
characteristics: basecalling and alignment
NEB HMW DNA extraction kit (T3050L)
characteristics: extraction protocol
T2T-CHM13v1.0 + HG002X + hg38Y
characteristics: genome build
Cells grown in RPMI-1640 with 15% FBS, 1% penn/strep at 37C with 5% CO2
characteristics: growth protocol
SQK-LSK109
characteristics: library preparation protocol
HG002
isolate
genomic DNA
http://www.ebi.ac.uk/efo/EFO_0008479
molecule
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
160
sample index
male
http://purl.obolibrary.org/obo/PATO_0000384
sex
blood
tissue
CENP-A targeted, rep4, run1
title