SAMN23384458
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:05.127Z
INSDC first public
2022-04-09T07:19:20.183Z
INSDC last update
SRS12547528
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547528
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-08
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG003F10 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F10 from the patient SMG003. The other clones isolated from the rectal swab of the same inpatient are SMG003F2, SMG003F3, and SMG003F7.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
61
host age
not determined
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O152:H-
serotype
SMG003F10
strain
Escherichia coli strain SMG003F10, isolated from rectal swab from an inpatient without UTI
title