SAMN23385281
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:15.903Z
INSDC first public
2022-04-09T07:19:19.200Z
INSDC last update
SRS12547522
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547522
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-08
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with urinary tract infection in one single center. The Escherichia coli strain SMG007F1 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F1 from the patient SMG007. The other clone isolated from the rectal swab of the same inpatient is SMG007F7. The strain fulfils the molecular criteria to be classified as UPEC and ExPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
81
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O18:K5:H5
serotype
SMG007F1
strain
Escherichia coli strain SMG007F1, isolated from rectal swab of an inpatients with UTI
title