SAMN23383013
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:05.080Z
INSDC first public
2022-04-09T07:19:25.480Z
INSDC last update
SRS12547556
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547556
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-08
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG004F8 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F8 from the patient SMG004. The other clone isolated from the rectal swab of the same inpatient is SMG04F1. TThe strain fulfils the molecular criterium to be classified as ExPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
63
host age
not determined
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O45:H45
serotype
SMG004F8
strain
Escherichia coli strain SMG004F8, isolated from an inpatient without UTI
title