SAMN23390744
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:15.937Z
INSDC first public
2022-04-09T07:19:20.590Z
INSDC last update
SRS12547530
INSDC secondary accession
live
INSDC status
BRA
ISO_country_code
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547530
SRA accession
GCA_022758785.1
assembly_ID
Universidade Federal de Sao Paulo
collected by
2019-09
collection date
2019
collection_year
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with urinary tract infection in one single center. The Escherichia coli strain SMG008U was isolated from urine culture from an inpatient with urinary tract infection. The strains isolated from the rectal swab of the same inpatient are SMG008F1, SMG008F2, SMG008F9, SMG008F10, and SMG008F11.
description
Escherichia
genus
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
71
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SMG008U
isolate
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
urinary tract
isolation_source_category
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O101:H10
serotype
SMG008U
strain
Escherichia coli strain SMG008U, isolated from urine culture of an inpatient with UTI
title