SAMN26232715
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:16.577Z
INSDC first public
2022-04-09T07:19:22.810Z
INSDC last update
SRS12547542
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547542
SRA accession
Universidade Federal de Sao Paulo
collected by
2019
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG014F12 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F12 from the patient SMG014. The other clones isolated from the rectal swab of the same inpatient are SMG014F10, and SMG014F11. The strain fulfils the molecular criteria to be classified as ExPEC and UPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
79
host age
UTI
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O25:H4
serotype
SMG014F12
strain
Escherichia coli strain SMG014F12, isolated from rectal swab of an inpatient with UTI
title