SAMN27302053
External Id
University of California, Berkeley
INSDC center name
2022-04-04T00:00:00Z
INSDC first public
2022-04-08T09:52:56.360Z
INSDC last update
SRS12504044
INSDC secondary accession
live
INSDC status
Human
NCBI submission model
Human.1.0
NCBI submission package
SRS12504044
SRA accession
Coriell Institute, Camden, NJ
biomaterial provider
GM12878
http://www.ebi.ac.uk/efo/EFO_0002784
cell line
rabbit anti CTCF (ab188408)
characteristics: antibody
Megalodon (v2.3.1), using a Rerio res_dna_r941_min_modbases-all-context_v001.cfg basecalling model
characteristics: basecalling and alignment
NEB Monarch genomic DNA extraction kit (T3010S)
characteristics: extraction protocol
T2T-CHM13v1.0
characteristics: genome build
Cells grown in RPMI-1640 with 15% FBS, 1% penn/strep at 37C with 5% CO2
characteristics: growth protocol
SQK-LSK109
characteristics: library preparation protocol
GM12878
http://www.ebi.ac.uk/efo/EFO_0002784
isolate
genomic DNA
http://www.ebi.ac.uk/efo/EFO_0008479
molecule
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
140
sample index
female
http://purl.obolibrary.org/obo/PATO_0000383
sex
blood
tissue
ctcf_opt5
title