SAMN26232719
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:16.607Z
INSDC first public
2022-04-09T07:19:22.090Z
INSDC last update
SRS12547538
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547538
SRA accession
Universidade Federal de Sao Paulo
collected by
2019
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG013U was isolated from an urine sample from an inpatient with urinary tract infection. The other clone isolated from the rectal swab of the same inpatient is SMG013F1. The strain fulfils the molecular criteria to be classified as ExPEC and UPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
60
host age
UTI
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O2/O50:H6
serotype
SMG013U
strain
Escherichia coli strain SMG013U, isolated from urine of an inpatient with UTI
title