SAMN22580315
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:14.827Z
INSDC first public
2022-04-09T07:19:24.120Z
INSDC last update
SRS12547549
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547549
SRA accession
Universidade Federal de Sao Paulo
collected by
2020
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG017F2 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F2 from the patient SMG017. The other clones isolated from the rectal swab of the same inpatient are SMG017F1, SMG017F3, and SMG017F8 and the isolated from urine is SMG017U.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
24
host age
UTI
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O88:H38
serotype
SMG017F2
strain
Escherichia coli strain SMG017F2, isolated from rectal swab of an inpatient with UTI
title