SAMN23384002
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:15.890Z
INSDC first public
2022-04-09T07:19:19.043Z
INSDC last update
SRS12547521
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547521
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-08
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG007U was isolated from urine culture of an inpatient with urinary tract infection. The strains isolated from the rectal swab of the same inpatient are SMG007F1 and SMG007F7. The strain fulfils the molecular criteria to be classified as UPEC and ExPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
81
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O18:K5:H5
serotype
SMG007U
strain
Escherichia coli strain SMG007U, isolated from urine culture of an inpatient with symptomatic UTI
title