SAMN23405798
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:16.013Z
INSDC first public
2022-04-09T07:19:20.980Z
INSDC last update
SRS12547532
INSDC secondary accession
live
INSDC status
BRA
ISO_country_code
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547532
SRA accession
GCA_022758385.1
assembly_ID
Universidade Federal de Sao Paulo
collected by
2019-09
collection date
2019
collection_year
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with and without urinary tract infection in one single center. The Escherichia coli strain SMG010F1 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to the single E. coli clone found in the patient SMG010. It is clone of the strain that cause the UTI.
description
Escherichia
genus
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
21
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SMG010F1
isolate
rectal swab
isolation source
gastrointestinal system
isolation_source_category
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O9a:H30
serotype
SMG010F1
strain
Escherichia coli strain SMG010F1, isolated from rectal swab of an inpatient with UTI
title