SAMN27302058
External Id
University of California, Berkeley
INSDC center name
2022-04-04T00:00:00Z
INSDC first public
2022-04-08T09:53:04.253Z
INSDC last update
SRS12504059
INSDC secondary accession
live
INSDC status
Human
NCBI submission model
Human.1.0
NCBI submission package
SRS12504059
SRA accession
Coriell Institute, Camden, NJ
biomaterial provider
GM12878
http://www.ebi.ac.uk/efo/EFO_0002784
cell line
rabbit anti CTCF (ab188408)
characteristics: antibody
CCS analysis with SMRTLink (v10) with option to include kinetics information; alignment using pbmm2 from SMRTLink (v10)
characteristics: basecalling and alignment
NEB HMW DNA extraction kit (T3050L); Covaris g-Tube (Covaris 520079)
characteristics: extraction protocol
T2T-CHM13v1.0
characteristics: genome build
Cells grown in RPMI-1640 with 15% FBS, 1% penn/strep at 37C with 5% CO2
characteristics: growth protocol
SMRTbellⓇ Express Template Prep Kit 2.0 (100-938-900)
characteristics: library preparation protocol
GM12878
http://www.ebi.ac.uk/efo/EFO_0002784
isolate
genomic DNA
http://www.ebi.ac.uk/efo/EFO_0008479
molecule
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
145
sample index
female
http://purl.obolibrary.org/obo/PATO_0000383
sex
blood
tissue
pacbio_ctcf
title