SAMN22581297
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:14.840Z
INSDC first public
2022-04-09T07:19:24.747Z
INSDC last update
SRS12547552
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547552
SRA accession
Universidade Federal de Sao Paulo
collected by
2020
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG017U was isolated from an urine sample from an inpatient with urinary tract infection. Other clones isolated from the rectal swab of the same inpatient are SMG017F1, SMG017F2, SMG017F3, and SMG017F8. The strain fulfils the molecular criteria to be classified as ExPEC and UPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
24
host age
UTI
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O6:H31
serotype
SMG017U
strain
Escherichia coli strain SMG017U, isolated from urine of an inpatient with UTI
title