SAMN21383417
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:03.937Z
INSDC first public
2022-04-09T07:19:08.010Z
INSDC last update
SRS12547515
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547515
SRA accession
Universidade Federal de Sao Paulo
collected by
2019
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG002F8 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F8 from the patient SMG002. The other clones isolated from the rectal swab of the same inpatient are SMG002F4, SMG002F5, SMG002F6, and SMG002F9.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
67
host age
not determined
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O-:H7
serotype
SMG002F8
strain
Pathogen: clinical or host-associated sample from Escherichia coli
title