SAMN21382254
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:03.877Z
INSDC first public
2022-04-08T11:23:16.713Z
INSDC last update
SRS12517104
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12517104
SRA accession
Universidade Federal de Sao Paulo
collected by
2019
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG001F2 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F2 from the patient SMG001. The other clones isolated from the rectal swab of the same inpatient are SMG001F1, SMG001F2, and SMG001F6.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
not determined
host disease
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O16:H9
serotype
SMG001F2
strain
Escherichia coli strain SMG001F2, isolated from rectal swab of an inpatient without UTI
title