SAMN23383043
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:05.093Z
INSDC first public
2022-04-09T07:19:25.870Z
INSDC last update
SRS12547558
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547558
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-08
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG005F3 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F3 from the patient SMG005. The other clone isolated from the rectal swab of the same inpatient is SMG005F2. The strain fulfils the molecular criteria to be classified as UPEC and ExPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
72
host age
not determined
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
ExPEC
pathotype
O75:H5
serotype
SMG005F3
strain
Escherichia coli SMG005F3, isolated from rectal swab of an inpatient without UTI
title