SAMN23404510
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:15.983Z
INSDC first public
2022-04-09T07:19:20.387Z
INSDC last update
SRS12547529
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547529
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-09
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with and without urinary tract infection in one single center. The Escherichia coli strain SMG009F1 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F1 from the patient SMG009. The other clone isolated from the rectal swab of the same inpatient is SMG009F5. The strain fulfils the molecular criteria to be classified as ExPEC and UPEC.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
53
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O6:H1
serotype
SMG009F1
strain
Escherichia coli SMG009F1, isolated from rectal swab of an inpatient with UTI
title