SAMN21383360
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-25T18:40:03.907Z
INSDC first public
2022-04-09T07:17:50.097Z
INSDC last update
SRS12547109
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547109
SRA accession
Universidade Federal de Sao Paulo
collected by
2019
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG002F4 was isolated from a rectal swab from an inpatient without urinary tract infection. This sequence refers to clone F4 from the patient SMG002. The other clones isolated from the rectal swab of the same inpatient are SMG002F5, SMG002F6, SMG002F8, and SMG002F9.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
67
host age
not determined
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O118/O151:H12
serotype
SMG002F4
strain
Escherichia coli strain SMG002F4, isolated from rectal swab of an inpatient without UTI
title