SAMN26233599
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:16.653Z
INSDC first public
2022-04-09T07:19:21.760Z
INSDC last update
SRS12547536
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547536
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-10
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with strains causing urinary tract infection in one single center. The Escherichia coli strain SMG012F3 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F3 from the patient SMG012. The other clones isolated from the rectal swab of the same inpatient are SMG012F1 and SMG012F6.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
48
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O9:H-
serotype
SMG012F3
strain
Escherichia coli SMG012F3, isolated from rectal swab of an inpatient with UTI
title