SAMN23404403
External Id
Universidade Federal de Sao Paulo
INSDC center name
2022-03-30T18:40:15.950Z
INSDC first public
2022-04-09T07:19:19.357Z
INSDC last update
SRS12547523
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS12547523
SRA accession
Universidade Federal de Sao Paulo
collected by
2019-09
collection date
This strain is part of a comparative study evaluating E. coli clones isolated from the gut of hospitalized patients with and without urinary tract infection in one single center. The Escherichia coli strain SMG008F1 was isolated from a rectal swab from an inpatient with urinary tract infection. This sequence refers to clone F1 from the patient SMG008. The other clones isolated from the rectal swab of the same inpatient are SMG008F2, SMG008F9, SMG008F10, and SMG008F11.
description
Brazil: Sao Paulo
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
71
host age
Urinary tract infection
http://www.ebi.ac.uk/efo/EFO_0003103
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
rectal swab
isolation source
22.36448060 S 46.94347391 W
lat lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
O174:H40
serotype
SMG008F1
strain
Escherichia coli strain SMG008F1
title