SAMN29152739
External Id
Utah Public Health Laboratory Infectious Disease submission group
INSDC center name
2022-06-16T00:00:00Z
INSDC first public
2022-06-16T20:19:19.180Z
INSDC last update
SRS13444110
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS13444110
SRA accession
2021-11-30
collection_date
USA: Utah
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
characterize diversity of lineages and mutations across entire genome
purpose_of_ww_sequencing
UPHL
sequenced_by
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
62837835.548
ww_flow
228700
ww_population
https://uofuhealth.utah.edu/huntsman/utah-population-database/
ww_population_source
no
ww_pre_treatment
Promega wastewater large volume TNA capture kit,Promega manual TNA kit
ww_processing_protocol
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
UT
ww_surv_jurisdiction
4437
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
1119830
ww_surv_target_1_conc
copies/L wastewater
ww_surv_target_1_conc_unit
N1 & N2 combined
ww_surv_target_1_gene
no
ww_surv_target_1_known_present
IDT Research Use Only Kit (https://www.idtdna.com/pages/landing/coronavirus-research-reagents/cdc-assays)
ww_surv_target_1_protocol