SAMN29439263
External Id
IDOHL BIOSAMPLE SUBMISSION GROUP
INSDC center name
2022-06-30T00:00:00Z
INSDC first public
2022-06-30T09:55:05.359Z
INSDC last update
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
Indiana State Department of Health
collected_by
2022-04-11
collection_date
LCRUD Influent
collection_site_id
Not Applicable
collection_time
250 ml
collection_volume
ceres nanotrap
concentration_method
BCoV
extraction_control
promega ht tna kit
extraction_method
USA: Indiana
geo_loc_name
Not Applicable
instantaneous_flow
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project_name
public health surveillance community-level
purpose_of_ww_sampling
stored at -70C until thawed at 4C
specimen_processing_details
Samples stored at -70C until thawed at 4C. After sample thawed completely, 10 ml sample concentrated on KingFisher 24 deep well plates and then extracted on KingFisher 96 deep well plate. Extract quantified on QIAcuity dPCR instrument. Extract also provided to molecular group for sequencing.
specimen_processing_id
SARS-CoV-2: wastewater surveillance
title
PMMoV
ww_endog_control_1
44032000
ww_endog_control_1_conc
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_endog_control_1_protocol
copies/L
ww_endog_control_1_units
685159
ww_flow
3000
ww_population
WWTP Supervisor
ww_population_source
stored at -70C until thawed at 4C
ww_processing_protocol
24 hour
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
IN
ww_surv_jurisdiction
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_surv_target_1
0
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
no
ww_surv_target_1_known_present
GT-Digital SARS-CoV-2 Wastewater Surveillance Assay For QIAcuity dPCR
ww_surv_target_1_protocol
SARS-CoV-65
ww_surv_target_2
0
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
no
ww_surv_target_2_known_present