SAMN25527858
External Id
SARS-CoV-2/Human/USA/NC-CDC-MMB13511136/2022
External Id
CDC-OAMD
INSDC center name
2022-02-01T00:00:00Z
INSDC first public
2022-07-01T18:23:50.287Z
INSDC last update
SRS13663206
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13663206
SRA accession
Mako Medical
collected by
2022-01-15
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
ORF1ab
diagnostic_gene_name_1
N gene
diagnostic_gene_name_2
S gene
diagnostic_gene_name_3
MS2
diagnostic_gene_name_4
15.033
diagnostic_pcr_Ct_value_1
15.582
diagnostic_pcr_Ct_value_2
Undetermined
diagnostic_pcr_Ct_value_3
26.244
diagnostic_pcr_Ct_value_4
TaqPath
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_protocol_4
USA: North Carolina
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
53
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
W
host race
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/NC-CDC-MMB13511136/2022
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title