SARS-CoV-2/Human/USA/TX-CDC-FG-236517/2022
External Id
SAMN25080457
External Id
CDC-OAMD
INSDC center name
2022-01-19T00:00:00Z
INSDC first public
2022-07-01T17:51:04.267Z
INSDC last update
SRS13659928
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13659928
SRA accession
Fulgent Genetics
collected by
2022-01-06
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
SC2
http://www.ebi.ac.uk/efo/EFO_0006481
diagnostic_gene_name_1
N1
diagnostic_gene_name_2
N2
http://www.ebi.ac.uk/efo/EFO_0004028
diagnostic_gene_name_3
26.7
diagnostic_pcr_Ct_value_2
26.8
diagnostic_pcr_Ct_value_3
CDC COVID-19
diagnostic_pcr_protocol_1
CDC COVID-19
diagnostic_pcr_protocol_2
CDC COVID-19
diagnostic_pcr_protocol_3
USA: Texas
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
14
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
DTA
host race
SARS-CoV-2/Human/USA/TX-CDC-FG-236517/2022
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title