SAMN25645581
External Id
SARS-CoV-2/Human/USA/CA-CDC-MMB13682070/2022
External Id
CDC-OAMD
INSDC center name
2022-02-04T00:00:00Z
INSDC first public
2022-07-01T23:55:33.890Z
INSDC last update
SRS13672238
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13672238
SRA accession
Mako Medical
collected by
2022-01-19
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
ORF1ab
diagnostic_gene_name_1
N gene
diagnostic_gene_name_2
S gene
diagnostic_gene_name_3
MS2
diagnostic_gene_name_4
21.698
diagnostic_pcr_Ct_value_1
21.97
diagnostic_pcr_Ct_value_2
Undetermined
diagnostic_pcr_Ct_value_3
24.276
diagnostic_pcr_Ct_value_4
TaqPath
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_protocol_4
USA: California
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
11
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
O
http://www.ebi.ac.uk/efo/EFO_0005707
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/CA-CDC-MMB13682070/2022
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title