SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-04-13
ENA-FIRST-PUBLIC
2022-04-13
ENA-LAST-UPDATE
SAMN27257831
External Id
CDC-OAMD
INSDC center alias
CDC-OAMD
INSDC center name
2022-04-13T01:48:07Z
INSDC first public
2022-04-13T01:48:07Z
INSDC last update
public
INSDC status
SARS-CoV-2/Human/USA/MA-CDC-ASC210847340/2022
Isolate
SRS12591451
SRA accession
SARS-CoV-2/Human/USA/MA-CDC-ASC210847340/2022
Submitter Id
NCBI
broker name
Aegis Sciences Corporation
collected_by
2022-03-23
collection_date
Nasal - Anterior Nares
collection_device
Nasal - Anterior Nares
collection_method
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
12.808798
diagnostic_pcr_Ct_value_1
13.975745
diagnostic_pcr_Ct_value_2
13.809252
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Massachusetts
geo_loc_name
Homo sapiens
host
58
host_age
COVID-19
host_disease
White
host_race
male
host_sex
Nasal - Anterior Nares
isolation_source
BA.2
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title