SAMN25730174
SAMN25730174
External Id
SARS-CoV-2/Human/USA/WI-CDC-LC0515026/2022
External Id
CDC-OAMD
INSDC center name
2022-02-08T00:00:00Z
INSDC first public
2022-07-23T17:41:36.083Z
INSDC last update
SRS14175525
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14175525
SRA accession
Laboratory Corporation of America
collected by
2022-01-25
collection date
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
24.114
diagnostic_pcr_Ct_value_1
21.957
diagnostic_pcr_Ct_value_2
26.674
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: Wisconsin
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
30
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/WI-CDC-LC0515026/2022
isolate
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title