SAMN25417282
SARS-CoV-2/Human/USA/NY-CDC-ASC210503414/2022
External Id
SAMN25417282
External Id
CDC-OAMD
INSDC center name
2022-01-30T00:00:00Z
INSDC first public
2022-07-23T10:15:29.920Z
INSDC last update
SRS14152020
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14152020
SRA accession
Aegis Sciences Corporation
collected by
2022-01-04
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
21.834991
diagnostic_pcr_Ct_value_1
21.688074
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: New York
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
3
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
Black or African American
http://purl.obolibrary.org/obo/HANCESTRO_0568
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/NY-CDC-ASC210503414/2022
isolate
Nasal - Anterior Nares
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title