SAMN23594195
External Id
SARS-CoV-2/Human/USA/TX-CDC-FG-176789/2021
External Id
CDC-OAMD
INSDC center name
2021-12-03T00:00:00Z
INSDC first public
2022-07-13T04:04:36.250Z
INSDC last update
SRS13813514
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13813514
SRA accession
Fulgent Genetics
collected by
2021-11-21
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
SC2
http://www.ebi.ac.uk/efo/EFO_0006481
diagnostic_gene_name_1
N1
diagnostic_gene_name_2
N2
http://www.ebi.ac.uk/efo/EFO_0004028
diagnostic_gene_name_3
qPCR
diagnostic_pcr_protocol_1
qPCR
diagnostic_pcr_protocol_2
qPCR
diagnostic_pcr_protocol_3
USA: Texas
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
52
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
CAU
host race
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/TX-CDC-FG-176789/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
AY.3.1
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title