SARS-CoV-2/Human/USA/CO-CDC-MMB11471892/2021
External Id
SAMN23616607
External Id
CDC-OAMD
INSDC center name
2021-12-04T00:00:00Z
INSDC first public
2022-07-01T17:54:48.413Z
INSDC last update
SRS13660548
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13660548
SRA accession
Mako Medical
collected by
2021-11-05
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
ORF1ab
diagnostic_gene_name_1
N gene
diagnostic_gene_name_2
S gene
diagnostic_gene_name_3
MS2
diagnostic_gene_name_4
17.142
diagnostic_pcr_Ct_value_1
18.498
diagnostic_pcr_Ct_value_2
17.715
diagnostic_pcr_Ct_value_3
26.631
diagnostic_pcr_Ct_value_4
TaqPath
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_protocol_4
USA: Colorado
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
44
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/CO-CDC-MMB11471892/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
AY.44
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title