SAMN24427004
External Id
SARS-CoV-2/Human/USA/CO-CDC-MMB11855434/2021
External Id
CDC-OAMD
INSDC center name
2021-12-27T00:00:00Z
INSDC first public
2022-07-13T14:25:22.280Z
INSDC last update
SRS13842682
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS13842682
SRA accession
Mako Medical
collected by
2021-11-28
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
ORF1ab
diagnostic_gene_name_1
N gene
diagnostic_gene_name_2
S gene
diagnostic_gene_name_3
MS2
diagnostic_gene_name_4
21.232
diagnostic_pcr_Ct_value_1
22.073
diagnostic_pcr_Ct_value_2
21.612
diagnostic_pcr_Ct_value_3
25.37
diagnostic_pcr_Ct_value_4
TaqPath
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_protocol_4
USA: Colorado
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
34
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
W
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/CO-CDC-MMB11855434/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
B.1.617.2
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title