SAMN23594827
External Id
SARS-CoV-2/Human/USA/MA-CDC-ATM-JWB9RRH22/2021
External Id
CDC-OAMD
INSDC center name
2021-12-03T00:00:00Z
INSDC first public
2021-12-03T13:00:37.052Z
INSDC last update
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
'Helix'
collected by
2021-11-16
collection date
Nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
N
diagnostic_gene_name_1
ORF1ab
diagnostic_gene_name_2
S
diagnostic_gene_name_3
Helix COVID-19 and Flu Test
diagnostic_pcr_protocol_1
Helix COVID-19 and Flu Test
diagnostic_pcr_protocol_2
Helix COVID-19 and Flu Test
diagnostic_pcr_protocol_3
USA: Massachusetts
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
31
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
White
http://purl.obolibrary.org/obo/HANCESTRO_0005
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/MA-CDC-ATM-JWB9RRH22/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
AY.27
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title