2022-07-11
ENA first public
2022-07-11
ENA last update
ERC000047
ENA-CHECKLIST
SAMEA110321957
External Id
EMG
INSDC center alias
EMG
INSDC center name
2022-07-11T12:20:43Z
INSDC first public
2022-07-11T12:20:43Z
INSDC last update
public
INSDC status
ERS12419565
SRA accession
SRR14474043_bin.28_metaWRAP_v1.3_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metaWRAP v1.3
binning software
EMG broker account, EMBL-EBI
broker name
2019-12-01
collection date
common name
82.45
%
completeness score
CheckM
completeness software
1.51
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR14474043 of study SRP319028.
description
Pig digestive system
environment (biome)
Colon
environment (feature)
Feces
environment (material)
China
geographic location (country and/or sea)
26.69
DD
geographic location (latitude)
106.59
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
pig gut metagenome
isolation source
pig gut metagenome
metagenomic source
uncultured Clostridia bacterium
http://purl.obolibrary.org/obo/NCBITaxon_244328
organism
Analyze the bacteria and antibiotic resistance gene in pig fecal in China
project name
SAMN19078913
sample derived from
Illumina NovaSeq 6000
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR14474043_bin.28_metaWRAP_v1.3_MAG
title