2022-07-11
ENA first public
2022-07-11
ENA last update
ERC000024
ENA-CHECKLIST
SAMEA110176328
External Id
Microbial ecology
INSDC center alias
Microbial ecology
INSDC center name
2022-07-11T16:41:41Z
INSDC first public
2022-07-11T16:41:41Z
INSDC last update
public
INSDC status
ERS12275140
SRA accession
2NDPOSCTRLWW5
Submitter Id
2018-11-13
collection date
Sample of wastewater, taken in the nearest manhole to a combined-sewer overflow outlet spilling out in the channel of an intermittent stream
description
wastewater (ENVO:00002001)
environment (biome)
sewage (ENVO:00002018)
environment (feature)
water
environment (material)
France
geographic location (country and/or sea)
0
m
geographic location (depth)
314
m
geographic location (elevation)
45.743931
DD
geographic location (latitude)
4.689935
DD
geographic location (longitude)
Auvergne-Rh�ne-Alpes administrative region, Rh�ne department, Marcy-l'Etoile town
geographic location (region and locality)
mimarks-survey
investigation type
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
ILMN-PTCF2 (GTGCCGYTRTGYGGCAAGA) and ILMN-PTCF2m (GTGCCCYTRTGYGGCAAGT); ILMN-PTCR2 (ATCAKYGCGGCGCGGTCRTA) and ILMNPTCR2m (ATGAGBGCTGCCCTGTCRTA)
pcr primers
Ecological assessment of combined-sewer overflow practices (PRJEB53724) - Domic 2215
project name
not provided
sampling campaign
not provided
sampling transect ID
Sequencing by synthesis (Illumina MiSeq Illumina V3)
sequencing method
Thiopurine S-methyltransferase (tpm)
target gene
200-235 bp, including the VPLCGK and YDRAAM conserved domains
target subfragment
wastewater
title
water
water environmental package