2022-07-10
ENA first public
2022-07-10
ENA last update
ERC000047
ENA-CHECKLIST
SAMEA110310545
External Id
EMG
INSDC center alias
EMG
INSDC center name
2022-07-10T04:23:25Z
INSDC first public
2022-07-10T04:23:25Z
INSDC last update
public
INSDC status
ERS12408153
SRA accession
SRR7188232_bin.47_metaWRAP_v1.3_MAG
Submitter Id
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly quality
metaSPAdes v3.15.3
assembly software
MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning parameters
metaWRAP v1.3
binning software
EMG broker account, EMBL-EBI
broker name
2015-10-23
collection date
common name
69.37
%
completeness score
CheckM
completeness software
2.42
%
contamination score
This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7188232 of study SRP148527.
description
Pig digestive system
environment (biome)
Colon
environment (feature)
Feces
environment (material)
China
geographic location (country and/or sea)
22.42
DD
geographic location (latitude)
112.13
DD
geographic location (longitude)
metagenome-assembled genome
investigation type
pig gut metagenome
isolation source
pig gut metagenome
metagenomic source
uncultured Methanomassiliicoccaceae bacterium
http://purl.obolibrary.org/obo/NCBITaxon_1963760
organism
Exploring the correlation between gut microbiota and feed efficiency in pigs
project name
SAMN09223330
sample derived from
Illumina HiSeq 2500
sequencing method
multi-marker approach
taxonomic identity marker
Metagenome-assembled genome: SRR7188232_bin.47_metaWRAP_v1.3_MAG
title