SAMN24468359
External Id
University of California San Diego
INSDC center name
2022-08-01T00:52:21.303Z
INSDC first public
2022-08-01T00:52:21.303Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMS.me
NCBI submission model
MIMS.me.human-associated.5.0
NCBI submission package
yes
abx_during_delivery
yes
abx_during_pregnancy
no
abx_for_chorio
no
abx_for_pprom
J7W2.M2
anonymized_name
6
apgar_at_10_min
not collected
apgar_at_15_min
1
apgar_at_1_min
3
apgar_at_5_min
32
birth_head_circumference_cm
47
birth_length_cm
2320
birth_weight_g
0
blood_transfusions
yes
bmz_during_pregnancy
yes
bottle_feeding_started
yes
breastfeeding_started
hospital
broad-scale environmental context
2019
collection_date
rarely
cows_milk_or_dairy
allergyic rhinitis
dad_allergies
0
days_intubated
0
days_on_abx
0
days_on_antifungal
1
days_on_cpap_or_nimv
0
days_on_hfnc_greater_than_2_liters
0
days_on_hfnc_less_than_or_equal_to_2_liters
0
days_on_systemic_steroid
caesarean
delivery_method
ucsd NICU, neonate, week 2, milk feed
description
Control
diagnosis
33.5
discharge_head_circumference_cm
49.5
discharge_length_cm
3316
discharge_weight_g
11
dol_bottle_feed
0
dol_enteral_feeding
3
dol_non_nutritive_sucking
40
duration_of_hospitalization_days
0
duration_of_rom_days
daily
egg
Animal secretion
empo_3
breast milk
env_material
hispanic, white
ethnicity
MBM and DBM
feeding_regiment_at_collection
daily
fish
no
g_tube
38.3
ga_at_discharge_or_transfer
USA: Southern CA
geographic location
32.5
gestation_age_at_birth_weeks
3
gravida
no
history_of_smoking_in_household
EFC 24 (with MBM when available)
home_feeding_regiment
no
home_oxygen
Homo sapiens
host
12
host_age_days
UBERON:breast
host_body_habitat
J7
host_subject_id
no
infant_abx
no
infant_antifungal
no
infant_received_surfactant
no
infant_steroid
not applicable
ivh
24
kcal_per_oz
not collected
latitude and longitude
NICU
local-scale environmental context
36
maternal_age_years
no
maternal_chorioamnionitis
FALSE
maternal_complication_anhydramnios
FALSE
maternal_complication_bacterial_vaginosis
FALSE
maternal_complication_cervical
True, gestational
maternal_complication_diabetes
FALSE
maternal_complication_gbs_bacteriuria
FALSE
maternal_complication_hypertension
FALSE
maternal_complication_hypothyroidism
FALSE
maternal_complication_iugr
FALSE
maternal_complication_ivf_pregnancy
FALSE
maternal_complication_marijuana_use
TRUE
maternal_complication_placenta_accreta
FALSE
maternal_complication_pre_e_with_severe_features
FALSE
maternal_complication_preeclampsia
FALSE
maternal_complication_preterm_labor
FALSE
maternal_complication_scleroderma
FALSE
maternal_complication_short_cervix
TRUE
maternal_complication_twin
FALSE
maternal_complication_vasa_previa
none
mom_allergies
yes
older_siblings
2
older_siblings_at_home
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
yes
other_abx_during_pregnancy
4
parity
no
pda_require_tx
daily
peanut
yes
pets
yes
planning_to_breastfeed
no
pprom
RA
respiratory_support
not collected
rop_stage
not collected
rop_zone
milk
sample_type
human milk metagenome
scientific_name
male
sex
never
shellfish
never
shrimp
allergic rhinitis, allergy (penicillin, peanut)
sibling_1_allergies
none
sibling_2_allergies
not applicable
sibling_3_allergies
none
simplified_moms_allergies
no
sip
never
soy
no
surgery_during_admission
1
time_before_frozen_days
Timepoint 2
timepoint
MIMS Environmental/Metagenome sample from metagenome
title
daily
tree_nuts
A
twin_id
FALSE
twin_in_study
4
twin_mother_id
DBM
type_milk_feed_in_sample
Mothers
type_of_milk
dog
type_of_pets
not applicable
type_of_steroid
daily
wheat