SAMN24468389
External Id
University of California San Diego
INSDC center name
2022-08-01T00:52:22.003Z
INSDC first public
2022-08-01T00:52:22.003Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMS.me
NCBI submission model
MIMS.me.human-associated.5.0
NCBI submission package
yes
abx_during_delivery
no
abx_during_pregnancy
no
abx_for_chorio
no
abx_for_pprom
J25W6.S2
anonymized_name
not collected
apgar_at_10_min
not collected
apgar_at_15_min
7
apgar_at_1_min
7
apgar_at_5_min
21
birth_head_circumference_cm
31
birth_length_cm
605
birth_weight_g
not collected
blood_transfusions
yes
bmz_during_pregnancy
not collected
bottle_feeding_started
not collected
breastfeeding_started
hospital
broad-scale environmental context
2020
collection_date
daily
cows_milk_or_dairy
none
dad_allergies
0
days_intubated
not collected
days_on_abx
14
days_on_antifungal
66
days_on_cpap_or_nimv
not collected
days_on_hfnc_greater_than_2_liters
not collected
days_on_hfnc_less_than_or_equal_to_2_liters
0
days_on_systemic_steroid
vaginal
delivery_method
ucsd NICU, neonate, week 6, stool
description
Control
diagnosis
not collected
discharge_head_circumference_cm
not collected
discharge_length_cm
not collected
discharge_weight_g
not collected
dol_bottle_feed
1
dol_enteral_feeding
not collected
dol_non_nutritive_sucking
not collected
duration_of_hospitalization_days
0
duration_of_rom_days
daily
egg
Animal distal gut
empo_3
feces
env_material
hispanic, white
ethnicity
DBM
feeding_regiment_at_collection
daily
fish
not collected
g_tube
not collected
ga_at_discharge_or_transfer
USA: Southern CA
geographic location
24.3
gestation_age_at_birth_weeks
1
gravida
no
history_of_smoking_in_household
not collected
home_feeding_regiment
not collected
home_oxygen
Homo sapiens
host
40
host_age_days
UBERON:feces
host_body_habitat
J25
host_subject_id
no
infant_abx
no
infant_antifungal
no
infant_received_surfactant
no
infant_steroid
2
ivh
not applicable
kcal_per_oz
not collected
latitude and longitude
NICU
local-scale environmental context
21
maternal_age_years
no
maternal_chorioamnionitis
FALSE
maternal_complication_anhydramnios
True, requiring flagyl
maternal_complication_bacterial_vaginosis
True, cervical dilation
maternal_complication_cervical
TRUE
maternal_complication_diabetes
FALSE
maternal_complication_gbs_bacteriuria
FALSE
maternal_complication_hypertension
FALSE
maternal_complication_hypothyroidism
FALSE
maternal_complication_iugr
FALSE
maternal_complication_ivf_pregnancy
FALSE
maternal_complication_marijuana_use
FALSE
maternal_complication_placenta_accreta
FALSE
maternal_complication_pre_e_with_severe_features
FALSE
maternal_complication_preeclampsia
TRUE
maternal_complication_preterm_labor
FALSE
maternal_complication_scleroderma
FALSE
maternal_complication_short_cervix
FALSE
maternal_complication_twin
FALSE
maternal_complication_vasa_previa
none
mom_allergies
no
older_siblings
0
older_siblings_at_home
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
yes
other_abx_during_pregnancy
1
parity
yes
pda_require_tx
daily
peanut
yes
pets
yes
planning_to_breastfeed
no
pprom
CPAP
respiratory_support
not collected
rop_stage
not collected
rop_zone
stool
sample_type
human gut metagenome
scientific_name
female
sex
never
shellfish
daily
shrimp
not applicable
sibling_1_allergies
not applicable
sibling_2_allergies
not applicable
sibling_3_allergies
none
simplified_moms_allergies
no
sip
rarely
soy
not collected
surgery_during_admission
1
time_before_frozen_days
Timepoint 3
timepoint
MIMS Environmental/Metagenome sample from metagenome
title
daily
tree_nuts
not applicable
twin_id
FALSE
twin_in_study
not applicable
twin_mother_id
not applicable
type_milk_feed_in_sample
Fecal
type_of_milk
dog
type_of_pets
not applicable
type_of_steroid
daily
wheat