SAMN24468314
External Id
University of California San Diego
INSDC center name
2022-08-01T00:52:20.400Z
INSDC first public
2022-08-01T00:52:20.400Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMS.me
NCBI submission model
MIMS.me.human-associated.5.0
NCBI submission package
yes
abx_during_delivery
yes
abx_during_pregnancy
yes
abx_for_chorio
yes
abx_for_pprom
J16W0.B2
anonymized_name
not collected
apgar_at_10_min
not collected
apgar_at_15_min
4
apgar_at_1_min
8
apgar_at_5_min
26
birth_head_circumference_cm
38
birth_length_cm
1175
birth_weight_g
0
blood_transfusions
yes
bmz_during_pregnancy
no
bottle_feeding_started
no
breastfeeding_started
hospital
broad-scale environmental context
2020
collection_date
daily
cows_milk_or_dairy
none
dad_allergies
0
days_intubated
2
days_on_abx
0
days_on_antifungal
17
days_on_cpap_or_nimv
0
days_on_hfnc_greater_than_2_liters
5
days_on_hfnc_less_than_or_equal_to_2_liters
0
days_on_systemic_steroid
caesarean
delivery_method
ucsd NICU, neonate, birth, meconium
description
Asthma
diagnosis
34.5
discharge_head_circumference_cm
47
discharge_length_cm
3380
discharge_weight_g
48
dol_bottle_feed
0
dol_enteral_feeding
47
dol_non_nutritive_sucking
81
duration_of_hospitalization_days
0
duration_of_rom_days
monthly
egg
Animal distal gut
empo_3
feces
env_material
mixed (white and black)
ethnicity
MBM and DBM
feeding_regiment_at_collection
weekly
fish
no
g_tube
38.6
ga_at_discharge_or_transfer
USA: Southern CA
geographic location
27.1
gestation_age_at_birth_weeks
1
gravida
no
history_of_smoking_in_household
EFC 22 (2/3) + MBM (1/3)
home_feeding_regiment
no
home_oxygen
Homo sapiens
host
1
host_age_days
UBERON:feces
host_body_habitat
J16
host_subject_id
yes
infant_abx
no
infant_antifungal
no
infant_received_surfactant
no
infant_steroid
not applicable
ivh
not applicable
kcal_per_oz
not collected
latitude and longitude
NICU
local-scale environmental context
22
maternal_age_years
yes
maternal_chorioamnionitis
FALSE
maternal_complication_anhydramnios
FALSE
maternal_complication_bacterial_vaginosis
FALSE
maternal_complication_cervical
FALSE
maternal_complication_diabetes
FALSE
maternal_complication_gbs_bacteriuria
FALSE
maternal_complication_hypertension
FALSE
maternal_complication_hypothyroidism
FALSE
maternal_complication_iugr
FALSE
maternal_complication_ivf_pregnancy
FALSE
maternal_complication_marijuana_use
FALSE
maternal_complication_placenta_accreta
FALSE
maternal_complication_pre_e_with_severe_features
FALSE
maternal_complication_preeclampsia
FALSE
maternal_complication_preterm_labor
FALSE
maternal_complication_scleroderma
FALSE
maternal_complication_short_cervix
TRUE
maternal_complication_twin
FALSE
maternal_complication_vasa_previa
asthma (childhood)
mom_allergies
no
older_siblings
0
older_siblings_at_home
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
yes
other_abx_during_pregnancy
2
parity
no
pda_require_tx
weekly
peanut
no
pets
yes
planning_to_breastfeed
no
pprom
CPAP
respiratory_support
0
rop_stage
3
rop_zone
meconium
sample_type
human gut metagenome
scientific_name
male
sex
monthly
shellfish
monthly
shrimp
not applicable
sibling_1_allergies
not applicable
sibling_2_allergies
not applicable
sibling_3_allergies
asthma
simplified_moms_allergies
no
sip
never
soy
no
surgery_during_admission
6
time_before_frozen_days
Timepoint 1
timepoint
MIMS Environmental/Metagenome sample from metagenome
title
monthly
tree_nuts
A
twin_id
TRUE
twin_in_study
2
twin_mother_id
not applicable
type_milk_feed_in_sample
Fecal
type_of_milk
not applicable
type_of_pets
not applicable
type_of_steroid
daily
wheat