Raw sequence files were trimmed using Trimmomatic version 0.36.0. We noticed that libraries were contaminated with Turtlegrass virus X (TVX; accession number MH077559). Therefore, TVX sequences were removed from all analyses.
Data_Analysis_Notes
SAMN27553353
External Id
University of South Florida
INSDC center name
2022-07-28T00:00:00Z
INSDC first public
2022-07-28T15:38:02.690Z
INSDC last update
SRS12616470
INSDC secondary accession
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
SRS12616470
SRA accession
Man_cDNA
Sample_Type
2017-07
collection_date
Metagenome of viral cDNA from freshwater macrophytes
description
USA: Florida
geo_loc_name
freshwater springs
isolation_source
29.49 N 82.98 W
lat_lon
freshwater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_449393
organism
Man_cDNA_Round2
title