SAMN24468335
External Id
University of California San Diego
INSDC center name
2022-08-01T00:52:20.783Z
INSDC first public
2022-08-01T00:52:20.783Z
INSDC last update
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMS.me
NCBI submission model
MIMS.me.human-associated.5.0
NCBI submission package
no
abx_during_delivery
yes
abx_during_pregnancy
no
abx_for_chorio
yes
abx_for_pprom
J15W2.M2
anonymized_name
6
apgar_at_10_min
6
apgar_at_15_min
1
apgar_at_1_min
4
apgar_at_5_min
21
birth_head_circumference_cm
30.5
birth_length_cm
720
birth_weight_g
not collected
blood_transfusions
yes
bmz_during_pregnancy
no
bottle_feeding_started
no
breastfeeding_started
hospital
broad-scale environmental context
2020
collection_date
weekly
cows_milk_or_dairy
none
dad_allergies
16
days_intubated
18
days_on_abx
28
days_on_antifungal
55
days_on_cpap_or_nimv
0
days_on_hfnc_greater_than_2_liters
36
days_on_hfnc_less_than_or_equal_to_2_liters
10
days_on_systemic_steroid
vaginal
delivery_method
ucsd NICU, neonate, week 2, milk feed
description
Control
diagnosis
not collected
discharge_head_circumference_cm
not collected
discharge_length_cm
not collected
discharge_weight_g
75
dol_bottle_feed
1
dol_enteral_feeding
85
dol_non_nutritive_sucking
not collected
duration_of_hospitalization_days
11
duration_of_rom_days
daily
egg
Animal secretion
empo_3
breast milk
env_material
white
ethnicity
MBM and DBM
feeding_regiment_at_collection
monthly
fish
not collected
g_tube
not collected
ga_at_discharge_or_transfer
USA: Southern CA
geographic location
23.3
gestation_age_at_birth_weeks
4
gravida
no
history_of_smoking_in_household
not collected
home_feeding_regiment
not collected
home_oxygen
Homo sapiens
host
16
host_age_days
UBERON:breast
host_body_habitat
J15
host_subject_id
yes
infant_abx
yes
infant_antifungal
yes
infant_received_surfactant
no
infant_steroid
2
ivh
20
kcal_per_oz
not collected
latitude and longitude
NICU
local-scale environmental context
41
maternal_age_years
no
maternal_chorioamnionitis
FALSE
maternal_complication_anhydramnios
FALSE
maternal_complication_bacterial_vaginosis
True, cervical insufficiency
maternal_complication_cervical
FALSE
maternal_complication_diabetes
FALSE
maternal_complication_gbs_bacteriuria
FALSE
maternal_complication_hypertension
FALSE
maternal_complication_hypothyroidism
FALSE
maternal_complication_iugr
FALSE
maternal_complication_ivf_pregnancy
FALSE
maternal_complication_marijuana_use
FALSE
maternal_complication_placenta_accreta
FALSE
maternal_complication_pre_e_with_severe_features
FALSE
maternal_complication_preeclampsia
FALSE
maternal_complication_preterm_labor
FALSE
maternal_complication_scleroderma
FALSE
maternal_complication_short_cervix
FALSE
maternal_complication_twin
FALSE
maternal_complication_vasa_previa
none
mom_allergies
yes
older_siblings
1
older_siblings_at_home
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
no
other_abx_during_pregnancy
1
parity
yes
pda_require_tx
weekly
peanut
yes
pets
yes
planning_to_breastfeed
yes
pprom
intubation
respiratory_support
not collected
rop_stage
not collected
rop_zone
milk
sample_type
human milk metagenome
scientific_name
female
sex
never
shellfish
never
shrimp
none
sibling_1_allergies
not applicable
sibling_2_allergies
not applicable
sibling_3_allergies
none
simplified_moms_allergies
no
sip
rarely
soy
not collected
surgery_during_admission
0
time_before_frozen_days
Timepoint 2
timepoint
MIMS Environmental/Metagenome sample from metagenome
title
weekly
tree_nuts
not applicable
twin_id
FALSE
twin_in_study
not applicable
twin_mother_id
MBM
type_milk_feed_in_sample
Mothers
type_of_milk
dog
type_of_pets
hydrocortisone
type_of_steroid
daily
wheat