SAMN24284849
External Id
SARS-CoV-2/Human/USA/MS-CDC-ASC210530286/2021
External Id
CDC-OAMD
INSDC center name
2021-12-21T00:00:00Z
INSDC first public
2022-08-07T13:37:51.603Z
INSDC last update
SRS14545364
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14545364
SRA accession
Aegis Sciences Corporation
collected by
2021-12-06
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
12.231725
diagnostic_pcr_Ct_value_1
12.171557
diagnostic_pcr_Ct_value_2
10.617334
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Mississippi
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
25
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
White
http://purl.obolibrary.org/obo/HANCESTRO_0005
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/MS-CDC-ASC210530286/2021
isolate
Nasal - Anterior Nares
isolation source
AY.103
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title