SARS-CoV-2/Human/USA/MD-CDC-MMB12215870/2021
External Id
SAMN24968369
External Id
CDC-OAMD
INSDC center name
2022-01-14T00:00:00Z
INSDC first public
2022-08-06T21:30:25.123Z
INSDC last update
SRS14523545
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14523545
SRA accession
Mako Medical
collected by
2021-12-16
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
ORF1ab
diagnostic_gene_name_1
N gene
diagnostic_gene_name_2
S gene
diagnostic_gene_name_3
MS2
diagnostic_gene_name_4
33.163
diagnostic_pcr_Ct_value_1
33.543
diagnostic_pcr_Ct_value_2
33.487
diagnostic_pcr_Ct_value_3
22.972
diagnostic_pcr_Ct_value_4
TaqPath
diagnostic_pcr_protocol_1
TaqPath
diagnostic_pcr_protocol_2
TaqPath
diagnostic_pcr_protocol_3
TaqPath
diagnostic_pcr_protocol_4
USA: Maryland
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
8
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
W
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/MD-CDC-MMB12215870/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
B.1.617.2
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title