SARS-CoV-2/Human/USA/CA-CDC-FG-241142/2022
External Id
SAMN25234602
External Id
CDC-OAMD
INSDC center name
2022-01-25T00:00:00Z
INSDC first public
2022-08-06T07:52:24.210Z
INSDC last update
SRS14498564
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14498564
SRA accession
Fulgent Genetics
collected by
2022-01-17
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
SC2
http://www.ebi.ac.uk/efo/EFO_0006481
diagnostic_gene_name_1
N1
diagnostic_gene_name_2
N2
http://www.ebi.ac.uk/efo/EFO_0004028
diagnostic_gene_name_3
30.0
diagnostic_pcr_Ct_value_1
CDC Flu SC2
diagnostic_pcr_protocol_1
CDC Flu SC2
diagnostic_pcr_protocol_2
CDC Flu SC2
diagnostic_pcr_protocol_3
USA: California
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
39
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
OTH
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/CA-CDC-FG-241142/2022
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title