SARS-CoV-2/Human/USA/TN-CDC-ASC210627667/2021
External Id
SAMN24475934
External Id
CDC-OAMD
INSDC center name
2021-12-29T00:00:00Z
INSDC first public
2022-08-07T04:50:53.143Z
INSDC last update
SRS14534444
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14534444
SRA accession
Aegis Sciences Corporation
collected by
2021-12-15
collection date
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swab
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
22.598005
diagnostic_pcr_Ct_value_1
21.896816
diagnostic_pcr_Ct_value_2
21.488026
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Tennessee
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
7
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/TN-CDC-ASC210627667/2021
isolate
nasal swab
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
AY.43
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title