MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2022-08-11
ENA-FIRST-PUBLIC
2022-08-11
ENA-LAST-UPDATE
SAMN29820946
External Id
pda|bregje_brinkmann
INSDC center alias
pda|bregje_brinkmann
INSDC center name
2022-08-11T03:16:48Z
INSDC first public
2022-08-11T03:16:48Z
INSDC last update
public
INSDC status
SRS14400054
SRA accession
NegativeControl
Submitter Id
NCBI
broker name
2021-03-22
collection_date
zebrafish facility
env_broad_scale
not applicable
env_local_scale
egg water
env_medium
Netherlands: Leiden
geo_loc_name
not applicable
host
not applicable
host_age
not applicable
host_family_relationship
not applicable
host_genotype
not applicable
host_growth_cond
not applicable
host_life_stage
not applicable
host_phenotype
not applicable
host_taxid
not applicable
host_tissue_sampled
52.17 N 4.46 E
lat_lon
metagenome
http://purl.obolibrary.org/obo/NCBITaxon_256318
organism
0
organism_count
not applicable
perturbation
0.8 mL lysis buffer without larvae was stored at -80 dC until DNA extraction. Immediately prior to DNA extraction (DNeasy Blood and Tissue Kit), the sample was thawed and homogenized for 5 min with 6 zirconium oxide beads (1 mm-diameter) in a tissue homogenizer (speed 7, Bullet Blender Blue-CE, Next Advance). For remaining steps, the extraction protocol of Davis et al. (2016) was followed (DOI: 10.1016/j.dib.2016.06.057).
samp_mat_process
1
samp_size
8 days
samp_store_dur
metagenome
title