Metagenome or environmental
BioSampleModel
2022-08-12
ENA-FIRST-PUBLIC
2022-08-12
ENA-LAST-UPDATE
SAMN27064702
External Id
pda|sofiakhanum
INSDC center alias
pda|sofiakhanum
INSDC center name
2022-08-12T01:25:59Z
INSDC first public
2022-08-12T01:25:59Z
INSDC last update
public
INSDC status
SRS12434598
SRA accession
Ar-ICT01-9_S9
Submitter Id
NCBI
broker name
2019-02-26
collection_date
16S rRNA amplicon sequencing of Mix4-cultured methanogens-captured by anti-D5 antibodies coated magnetic beads
description
Archaeal 16S rRNA gene V6-V8 amplicon sequencing from defined mixture of methanogen strains
design_description
Ar-ICT01-09_S9_L001_R1_001.fastq.gz
filename
Ar-ICT01-09_S9_L001_R2_001.fastq.gz
filename2
fastq
filetype
New Zealand
geo_loc_name
Bos taurus
host
Illumina MiSeq
instrument_model
Cultured methanogens strain
isolation_source
40.3545 S 175.6097 E
lat_lon
Ar-ICT01-09-S9-L001
library_id
paired
library_layout
PCR
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
bovine gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_506599
organism
ILLUMINA
platform
Cross-reactivity of antibodies to different rumen methanogens demonstrated using immunomagnetic capture technology
ref_biomaterial
anaerobe
rel_to_oxygen
cultivar
samp_collect_device
DNA extraction of captured methanogen using antibodies coated beads and PCR
samp_mat_process
10000000 cells
samp_size
cultured Methanogen strains
source_material_id
16S rRNA amplicon sequencing of rat caecal contents
title
16S rRNA amplicon sequencing of Mix4-cultured methanogens-captured by anti-D5 antibodies coated magnetic beads
title