SARS-CoV-2/Human/USA/IL-CDC-ASC210389092/2021
External Id
SAMN23730080
External Id
CDC-OAMD
INSDC center name
2021-12-07T00:00:00Z
INSDC first public
2022-08-24T00:06:31.610Z
INSDC last update
SRS14764517
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14764517
SRA accession
Aegis Sciences Corporation
collected by
2021-11-04
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
10.614674
diagnostic_pcr_Ct_value_1
12.192733
diagnostic_pcr_Ct_value_2
10.139144
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Illinois
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
53
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/IL-CDC-ASC210389092/2021
isolate
Nasal - Anterior Nares
isolation source
AY.100
http://www.ebi.ac.uk/efo/EFO_0007874
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title