CFSAN
Center Name
SAMN23491433
External Id
FDA Center for Food Safety and Applied Nutrition
INSDC center name
2021-11-29T00:00:00Z
INSDC first public
2022-08-26T14:38:41.592Z
INSDC last update
SRS11177422
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS11177422
SRA accession
FDA Center for Food Safety and Applied Nutrition
collected by
2021-09-20
collection date
MOB
collection_site_id
25L
collection_volume
peg precipitation + ultracentrifugation
concentration_method
qiagen rneasy kit
extraction method
Murine norovirus
extraction_control
USA: Alabama
geo loc name
wastewater
isolation source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project name
public health surveillance community-level
purpose_of_ww_sampling
Pilot Exercise
purpose_of_ww_sequencing
FDA Center for Food Safety and Applied Nutrition
sequenced_by
SARS-CoV-2: wastewater surveillance
title
crAssphage
ww_endog_control_1
Not provided
ww_endog_control_1_conc
RT-qPCR Detection of Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
ww_endog_control_1_protocol
Not provided
ww_endog_control_1_units
Not provided
ww_endog_control_2
Not provided
ww_endog_control_2_protocol
151037930
ww_flow
10
ww_industrial_effluent_percent
7.1
ww_ph
250000
ww_population
utilities billing records
ww_population_source
2 inch bar screener
ww_pre_treatment
0
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
grab
ww_sample_type
SARS-CoV-2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
ww_surv_target_1
33.04, 34.04, 0.00
ww_surv_target_1_conc
Ct value
ww_surv_target_1_conc_unit
33.04, 34.04, 0.00,
ww_surv_target_1_extract
Ct values
ww_surv_target_1_extract_unit
N gene (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
0.00, 0.00, 0.00
ww_surv_target_2_conc
copies (Ct value)
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
no
ww_surv_target_2_known_present
RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
ww_surv_target_2_protocol
27
ww_temperature
122
ww_total_suspended_solids