SAMN23454701
External Id
SARS-CoV-2/Human/USA/CA-CDC-2-5166130/2021
External Id
CDC DVD Genomics and DIscovery Team
INSDC center name
2021-11-26T00:00:00Z
INSDC first public
2022-08-27T02:13:50.917Z
INSDC last update
SRS14820473
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14820473
SRA accession
CDPH, Viral and Rickettsial Disease Laboratory
collected by
2021-10-28
collection date
N
diagnostic_gene_name_1
16.6
diagnostic_pcr_Ct_value_1
Swift Primers V2
diagnostic_pcr_protocol_1
USA: California
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/CA-CDC-2-5166130/2021
isolate
B.1.617.2
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
National SARS-CoV-2 Surveillance
title