SARS-CoV-2/Human/USA/OR-CDC-LC0445587/2021
External Id
SAMN24702017
External Id
CDC-OAMD
INSDC center name
2022-01-07T00:00:00Z
INSDC first public
2022-08-27T05:43:32.157Z
INSDC last update
SRS14838240
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14838240
SRA accession
Laboratory Corporation of America
collected by
2021-12-23
collection date
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
collection method
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
collection_device
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
21.483
diagnostic_pcr_Ct_value_1
19.784
diagnostic_pcr_Ct_value_2
31.491
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: Oregon
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
34
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/OR-CDC-LC0445587/2021
isolate
Nasal Swabs
http://purl.obolibrary.org/obo/NCIT_C155833
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title