SARS-CoV-2/Human/USA/TN-CDC-ASC210508026/2022
External Id
SAMN25245063
External Id
CDC-OAMD
INSDC center name
2022-01-25T00:00:00Z
INSDC first public
2022-08-27T00:23:20.170Z
INSDC last update
SRS14815010
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14815010
SRA accession
Aegis Sciences Corporation
collected by
2022-01-08
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
30.775324
diagnostic_pcr_Ct_value_1
28.880154
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Tennessee
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
80
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
White
http://purl.obolibrary.org/obo/HANCESTRO_0005
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/TN-CDC-ASC210508026/2022
isolate
Nasal - Anterior Nares
isolation source
B
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title