SARS-CoV-2/Human/USA/IL-CDC-ASC210553466/2022
External Id
SAMN26152668
External Id
CDC-OAMD
INSDC center name
2022-02-22T00:00:00Z
INSDC first public
2022-08-30T12:27:05.540Z
INSDC last update
SRS14894562
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14894562
SRA accession
Aegis Sciences Corporation
collected by
2022-02-10
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
14.4428625
diagnostic_pcr_Ct_value_1
13.914604
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: Illinois
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
74
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
White
http://purl.obolibrary.org/obo/HANCESTRO_0005
host race
male
http://purl.obolibrary.org/obo/PATO_0000384
host sex
SARS-CoV-2/Human/USA/IL-CDC-ASC210553466/2022
isolate
Nasal - Anterior Nares
isolation source
BA.1.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title