SAMN30466959
External Id
USDA-ARS-USMARC
INSDC center name
2022-08-23T00:00:00Z
INSDC first public
2022-08-30T12:06:20.921Z
INSDC last update
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
Rectoanal junction mucosal swab samples were collected using foam tipped swabs as described in PMID: 27052855. Swab samples were spiral plated (50ul per plate) onto MacConkey Agar containing either azithromycin (16mg/L) or cefotaxime (8mg/L). Colonies demonstrating azithromycin or cefotaxime resistance were selected for further analysis.
Sample_material_processing
GCA_025200555.1
assembly_ID
2013-10-01
collection_date
alternate sampled site label is anorectal junction (http://purl.bioontology.org/ontology/SNOMEDCT/57444000) mucosa
description
Escherichia
genus
USA:Kansas
geo_loc_name
Bos taurus
host
5-7 months
host_age
calf
host_description
alive
host_health_state
110
host_subject_id
9913
host_taxonomy_ID
rectoanal junction mucosa
host_tissue_sampled
feedlot
isolation_source
3
number_of_replicons
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
swab
sample_collection_device_or_method
USDA-ARS-USMARC-51408
strain
Pathogen: clinical or host-associated sample from Escherichia coli
title