SAMN25222399
External Id
SARS-CoV-2/Human/USA/SC-CDC-ASC210564719/2022
External Id
CDC-OAMD
INSDC center name
2022-01-24T00:00:00Z
INSDC first public
2022-08-30T12:59:19.867Z
INSDC last update
SRS14900261
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
SRS14900261
SRA accession
Aegis Sciences Corporation
collected by
2022-01-02
collection date
Nasal - Anterior Nares
collection method
Nasal - Anterior Nares
collection_device
N gene
diagnostic_gene_name_1
S gene
diagnostic_gene_name_2
ORF1ab
diagnostic_gene_name_3
12.898359
diagnostic_pcr_Ct_value_1
12.863383
diagnostic_pcr_Ct_value_3
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_1
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_2
TaqPath COVID-19 Combo Kit
diagnostic_pcr_protocol_3
USA: South Carolina
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
34
host age
COVID-19
http://purl.obolibrary.org/obo/MONDO_0100096
host disease
White
http://purl.obolibrary.org/obo/HANCESTRO_0005
host race
female
http://purl.obolibrary.org/obo/PATO_0000383
host sex
SARS-CoV-2/Human/USA/SC-CDC-ASC210564719/2022
isolate
Nasal - Anterior Nares
isolation source
BA.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title