MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.soil
BioSampleModel
2022-09-14
ENA-FIRST-PUBLIC
2022-09-14
ENA-LAST-UPDATE
SAMN30789297
External Id
pda|krishnaray
INSDC center alias
pda|krishnaray
INSDC center name
2022-09-14T01:43:56Z
INSDC first public
2022-09-14T01:43:56Z
INSDC last update
public
INSDC status
SRS15090992
SRA accession
Sundarban cultivated rice rhizosphere 02
Submitter Id
NCBI
broker name
2021-09-12
collection_date
0 to 30 cm
depth
This study was initiated to find out the absolute abundance of different bacterial communities present in cultivated rice rhizosphere habitat soil at Indian Sundarbans. It was done through isolation of soil DNA from the respective site and amplicon database generation through 16S rRNA Sequencing using Illumina MiSeq platform of next generation sequencing. Comparison of this rhizosphere microbiome information with that of other native halophytic grasses rhizospheres of Indian Sundarbans might result into identification of some particular bacterial community abundances as metrics which could indicate the importance of the halophytic grass rhizosphere microbiome in future studies.
description
1 m
elev
cultivated rice rhizosphere microbiome
env_broad_scale
lowland
env_local_scale
cultivated field soil
env_medium
India: Sundarbans
geo_loc_name
Sundarban cultivated rice rhizosphere 02 soil microbiome
isolation_source
21.47 N 88.22 E
lat_lon
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
MIMS Environmental/Metagenome sample from Sundarban cultivated rice rhizosphere 02 soil microbiome
title