SAMN30885898
External Id
West Bengal State University
INSDC center name
2022-09-16T00:00:00Z
INSDC first public
2022-09-16T14:05:18.360Z
INSDC last update
SRS15144610
INSDC secondary accession
live
INSDC status
MIMS.me
NCBI submission model
MIGS/MIMS/MIMARKS.soil
NCBI submission model
MIMS.me.soil.5.0
NCBI submission package
SRS15144610
SRA accession
2022-03-05
collection_date
0 to 30 cm
depth
This study was initiated to find out the absolute abundance of different bacterial communities present in cultivated rice rhizosphere habitat soil at Indian Sundarbans. It was done through isolation of soil DNA from the respective site and amplicon database generation through 16S rRNA Sequencing using Illumina MiSeq platform of next generation sequencing. Comparison of this rhizosphere microbiome information with that of other native halophytic grasses rhizospheres and root endospheres of mangrove species of Indian Sundarbans might result into identification of some particular bacterial community abundances differences in abundance profile which could help in future studies.
description
1 m
elev
cultivated rice rhizosphere microbiome
env_broad_scale
lowland
env_local_scale
cultivated field soil
env_medium
India: Sundarbans
geo_loc_name
21.47 N 88.22 E
lat_lon
rhizosphere metagenome
http://purl.obolibrary.org/obo/NCBITaxon_939928
organism
MIMS Environmental/Metagenome sample from Sundarban cultivated rice rhizosphere 03
title