SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-09-17
ENA-FIRST-PUBLIC
2022-09-17
ENA-LAST-UPDATE
SAMN30864484
External Id
CDC-OAMD
INSDC center alias
CDC-OAMD
INSDC center name
2022-09-17T01:28:37Z
INSDC first public
2022-09-17T01:28:37Z
INSDC last update
public
INSDC status
SARS-CoV-2/Human/USA/PA-CDC-LC0872592/2022
Isolate
SRS15135322
SRA accession
SARS-CoV-2/Human/USA/PA-CDC-LC0872592/2022
Submitter Id
NCBI
broker name
Laboratory Corporation of America
collected_by
2022-09-02
collection_date
Nasal Swabs
collection_device
Nasal Swabs
collection_method
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
22.969
diagnostic_pcr_Ct_value_1
18.746
diagnostic_pcr_Ct_value_2
29.748
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: Pennsylvania
geo_loc_name
Homo sapiens
host
32
host_age
COVID-19
host_disease
female
host_sex
Nasal Swabs
isolation_source
BA.5.2.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title