SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-09-29
ENA-FIRST-PUBLIC
2022-09-29
ENA-LAST-UPDATE
SAMN31055995
External Id
CDC-OAMD
INSDC center alias
CDC-OAMD
INSDC center name
2022-09-29T01:35:38Z
INSDC first public
2022-09-29T01:35:38Z
INSDC last update
public
INSDC status
SARS-CoV-2/Human/USA/VA-CDC-LC0884985/2022
Isolate
SRS15269285
SRA accession
SARS-CoV-2/Human/USA/VA-CDC-LC0884985/2022
Submitter Id
NCBI
broker name
Laboratory Corporation of America
collected_by
2022-09-13
collection_date
Nasal Swabs
collection_device
Nasal Swabs
collection_method
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
19.609
diagnostic_pcr_Ct_value_1
17.368
diagnostic_pcr_Ct_value_2
33.237
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: Virginia
geo_loc_name
Homo sapiens
host
33
host_age
COVID-19
host_disease
male
host_sex
Nasal Swabs
isolation_source
BA.5.1.3
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title