MIGS.eu
BioSampleModel
MIGS/MIMS/MIMARKS.soil
BioSampleModel
2022-07-26
ENA-FIRST-PUBLIC
2022-07-26
ENA-LAST-UPDATE
SAMN29933594
External Id
pda|coco3
INSDC center alias
pda|coco3
INSDC center name
2022-07-26T01:45:38Z
INSDC first public
2022-07-26T01:45:38Z
INSDC last update
public
INSDC status
SRS14288875
SRA accession
FBL503
Submitter Id
NCBI
broker name
Minimedusa polyspora FBL 503 (Cantharellales, Agaricomycotina), isolated from soil-litter interface of the Mediterranean maquis, Italy (Pinzari et al., 2014), is a cellulolytic fungus with a high biotech potential (see Spinelli et al., 2022). Minimedusa polyspora FBL 503 tolerated naphthalene, phenanthrene, pyrene (20 mg/L) and a mix of them (1:1:1). Furthermore, this strain showed ability to produce biosurfactants (Spinelli et al., unpublished results). Here, we report the draft genome sequence of the strain FBL 503 with statistics of genome assembly (i.e., N50, number of genes and scaffolds, genome size). The genome was assembled denovo and was used to functionally annotate M. polyspora FBL 503 (see Davolos et al., 2021). Mining the genome of M. polyspora FBL 503 also allowed the identification of biosynthetic gene clusters for secondary metabolism pathways. Our genomic data on M. polyspora FBL 503 are a basis for transcriptomic approaches of this strain under exposure to polycyclic aromatic hydrocarbons. The strain FBL 503 is preserved in the mycological collection of Fungal Biodiversity Laboratory (FBL), Department of Environmental Biology, Sapienza University of Rome, Rome, Italy. The Department of Technological Innovations and Safety of Plants, Products and Anthropic Settlements (DIT), INAIL, Research Area, Rome, Italy, financially supported the whole genome sequencing of M. polyspora FBL 503 as part of the NGS Project in the PAR 2019-2021.
description
6-9 m a.s.l.
elev
soil-litter interface of the Mediterranean maquis, Italy
env_broad_scale
soil-litter interface of the Mediterranean maquis,
env_local_scale
soil-litter interface
env_medium
Italy: Castel Volturno, Campania
geo_loc_name
Minimedusa polyspora
http://purl.obolibrary.org/obo/NCBITaxon_411564
organism
FBL 503
strain
Draft genome sequence of Minimedusa polyspora FBL 503 (Agaricomycotina) with a high biotech potential.
title