SAMN30418779
External Id
Institute of technology Carlow, Ireland
INSDC center name
2022-10-30T00:50:20Z
INSDC first public
2022-10-30T00:50:20Z
INSDC last update
live
INSDC status
Metagenome or environmental
NCBI submission model
Metagenome.environmental.1.0
NCBI submission package
2022-01-01
collection_date
In the process from DNA samples to final data, each step such as sample test, PCR, purification, library preparation and sequencing will affect the quality and quantity of data, while the data quality will directly affect the subsequent information analysis results. In order to keep the accuracy and reliability of sequencing data, quality control (QC) is performed at each step of the procedure.
design_description
Taxa relative abundance in phylum
filename
Taxonomic abundance cluster heatmap
filename2
Tenary plot and stacked bar chart
filetype
Ireland: Carlow
geo_loc_name
nonlinear model
instrument_model
soil
isolation_source
52.8365 N 6.9341 W
lat_lon
X204SC22020068-Z01-F002
library_ID
Operational Taxonomic Units (OTUs) clustering
library_layout
PCR Amplification
library_selection
METAGENOMIC
library_source
PE250 strategy sequencing
library_strategy
soil metagenome
http://purl.obolibrary.org/obo/NCBITaxon_410658
organism
Illumina sequencing platform
platform
soil,control,rep1
sample_attributes
Sustainable management of the potato cyst nematode, Globodera rostochiensis, with two microbial fermentation products
title
Metagenome or environmental sample from soil metagenome
title