SAMN31055412
External Id
Pacific Northwest National Laboratory
INSDC center name
2022-10-14T00:00:00Z
INSDC first public
2022-10-27T10:29:27.073Z
INSDC last update
SRS15313269
INSDC secondary accession
live
INSDC status
MIGS.ba
NCBI submission model
MIGS/MIMS/MIMARKS.plant-associated
NCBI submission model
MIGS.ba.plant-associated.5.0
NCBI submission package
SRS15313269
SRA accession
https://kare.ucanr.edu/Weather_Physical_-_Biological_Data/
climate_environment
Pacific Northwest National Laboratory
collected_by
2021-10-20
collection_date
0-30 cm
depth
Sequencing of plant-associated microbiome bacterial isolates from rhizosphere soil.
description
109 m
elev
environment associated with a plant part or small plant [ENVO:01001057]
env_broad_scale
rhizosphere environment [ENVO:01000999]
env_local_scale
rhizosphere [ENVO:00005801] | soil [ENVO:00001998]
env_medium
USA: California, Parlier, Kearney Agricultural Research and Extension Center (KARE)
geo_loc_name
Sorghum bicolor
host
https://phytozome-next.jgi.doe.gov/info/Sbicolor_v3_1_1
host_genotype
4558
host_taxid
https://doi.org/10.1073/pnas.1907500116
isol_growth_condt
rhizosphere and root exudates
isolation_source
36.60 N 119.51 W
lat_lon
1
num_replicons
Pseudomonas sp. SO81
http://purl.obolibrary.org/obo/NCBITaxon_2983246
organism
rhizosphere
plant_product
SFA-Secure Biosystems Design: Persistence Control of Engineered Functions in Complex Soil Microbiomes (PerCon SFA)
project_name
https://kare.ucanr.edu/Weather_Physical_-_Biological_Data/?weather=station&station=39
rainfall_regm
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527782
ref_biomaterial
Sandy loam
soil_type
SO81
strain
Liquid enrichment cultures and cultivation assays were performed using either MME medium or MMV medium (with 1x vitamin solution) cultured with variable carbon sources.
tiss_cult_growth_med
Whole genome sequencing of Pseudomonas sorgoleonovorans SO81, a potential plant growth promoting microbe (PGPM), derived from Sorghum bicolor rhizosphere soil
title