SAMN22308638
External Id
University of Arkansas for Medical Sciences
INSDC center name
2022-11-01T00:51:13.647Z
INSDC first public
2022-11-01T00:51:13.647Z
INSDC last update
SRS10623100
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.survey
NCBI submission model
MIMARKS.survey.host-associated.5.0
NCBI submission package
SRS10623100
SRA accession
1
area
2016-10-29
collection_date
Keywords: GSC:MIxS;MIMARKS:5.0
description
feces(ENVO:00002003)
env_medium
GGWACWGGWTGAACWGTWTAYCCYCC
forward_primer_co1
CGAAATCGGTAGACGCTACG
forward_primer_trnl
West Marsh
general_pasture
USA:Florida(GAZ,00002888)
geo_loc_name
Sus scrofa
host
feces
host_body_product
1Q027
host_subject_id
1758
host_taxid
scat (feces)
isolation_source
S009593
jonah_ventures_barcode
27.16783 N 81.2245 W
lat_lon
pig gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1510822
organism
West Marsh Center
pasture
SemiNative
pasture_type
CCNCCTCCNGCWGGRTCRAARAA
reverse_primer_co1
CCATTGAGTCTCTGCACCTATC
reverse_primer_trnl
Ziploc bag
samp_collect_device
Genomic DNA from scat was extracted using the MoBio PowerSoil-htp 96-well Isolation Kit (Carlsbad, CA). All PCR reactions were normalized to equimolar concentrations abd cleaned using the MoBio UltraClean PCR Clean-Up protocol. Sequencing libraries were prepared and ran on the Illumina MiSeq by Jonah Ventures (Boulder, CO).
samp_mat_process
RCREC
samp_store_loc
-20 C
samp_store_temp
undetermined
scat_age
4
time_point
Wild pig scat 1Q027
title