MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.specimen
BioSampleModel
2022-11-22
ENA-FIRST-PUBLIC
2022-11-22
ENA-LAST-UPDATE
SAMN24593477
External Id
pda|karstens@ohsu.edu
INSDC center alias
pda|karstens@ohsu.edu
INSDC center name
2022-11-22T01:32:15Z
INSDC first public
2022-11-22T01:32:15Z
INSDC last update
public
INSDC status
SRS11479540
SRA accession
SUFU_vs_229
Submitter Id
NCBI
broker name
2016-09
collection_date
collected by vaginal swab; thawed and DNA extracted for sequencing
description
DNeasy PowerSoil DNA
dna_extraction
Urban BiomeENVO:01000249; Human
env_broad_scale
associated habitat ENVO:00009003
env_local_scale
Vaginal Swab
env_medium
USA: Oregon, Portland
geo_loc_name
Homo sapiens
host
64
host_age
25.01
host_body_mass_index
urgency urinary incontinence
host_disease
female
host_sex
SUFU_229
host_subject_id
45.5152 N 122.6784 W
lat_lon
Postmenopausal
menstrual_status
human vaginal metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1632839
organism
no
recent_abx
swab
samp_collect_device
44.3
samp_dna_conc
0.6 hrs
samp_freeze_interval
vaginal swab frozen at -80, thawed, DNA extracted per protocol
samp_protocol
-80 Celsius
samp_store_temp
Illumina MiSeq
seq_meth
human vaginal metagenome
title