MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.specimen
BioSampleModel
2022-11-22
ENA-FIRST-PUBLIC
2022-11-22
ENA-LAST-UPDATE
SAMN24593398
External Id
pda|karstens@ohsu.edu
INSDC center alias
pda|karstens@ohsu.edu
INSDC center name
2022-11-22T01:32:14Z
INSDC first public
2022-11-22T01:32:14Z
INSDC last update
public
INSDC status
SRS11479470
SRA accession
SUFU_ur_123
Submitter Id
NCBI
broker name
2016-09
collection_date
cell pellets from urine; thawed and DNA extracted for sequencing
description
Qiagen DNeasy Blood and Tissue Kit
dna_extraction
Urban BiomeENVO:01000249; Human
env_broad_scale
associated habitat ENVO:00009003
env_local_scale
Urine Material ENVO_00002047
env_medium
USA: Oregon, Portland
geo_loc_name
Homo sapiens
host
51
host_age
21.95
host_body_mass_index
control
host_disease
female
host_sex
SUFU_123
host_subject_id
45.5152 N 122.6784 W
lat_lon
Premenopause
menstrual_status
human urinary tract metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2516875
organism
no
recent_abx
catheter
samp_collect_device
120.4
samp_dna_conc
0.7 hrs
samp_freeze_interval
catheterized urine frozen at -80, thawed, spun, and pellet washed with PBS, cell pellet frozen at -80
samp_protocol
-80 Celsius
samp_store_temp
Illumina MiSeq
seq_meth
human urinary tract metagenome
title