MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-12-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248094
External Id
0.784087686
FEV1FVC
-1.599622067
FEV1FVCZ
1.700000048
FEV1_baseline
64.19680372
FEVpcpred
2.168124914
FVC
-2.086289141
FVCZ
72.72430924
FVCpcpred
15866
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
37800
RawReads_ASVpipeline
SRS10620623
SRA accession
BSP0300
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
yes
adm
14.13
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0300
barcode
806rcbc33
barcode_806R
NCBI
broker name
612
cd4
2018-02-09
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-01-30T00:00:00
dateart
2009-04-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.11
duryart
2018-07-27T00:00:00
endfollowup
['NA', '2018-02-09T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.68494666
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.1
host_age
20.741255
host_body_mass_index
HIV-associated chronic lung disease
host_disease
64.19680372
host_height
yes
host_hiv_stat
female
host_sex
B1057
host_subject_id
human respiratory
host_tissue_sampled
TCACGGGAGTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
1
nadm
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:35:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.003133727
templateDNA_16SqPCR
25.49409653
templateDNA_16SqPCR_Cq
4418.031
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-09T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
50.8
weight
B04
well
-0.39870021
zbmiuk
-1.182411
zhauk
-0.99347496
zwauk
no
zymo_DNA