MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-04-24T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248108
External Id
0.853453131
FEV1FVC
-0.536925215
FEV1FVCZ
1.899999976
FEV1_baseline
77.47280734
FEVpcpred
2.226249933
FVC
-1.56491494
FVCZ
80.62387547
FVCpcpred
15591
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
39294
RawReads_ASVpipeline
SRS10620672
SRA accession
BSP0381
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
11.95
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0381
barcode
806rcbc22
barcode_806R
NCBI
broker name
409
cd4
2018-04-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-04-07T00:00:00
dateart
2015-03-26T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.11
duryart
2018-10-04T00:00:00
endfollowup
['NA', '2018-04-19T00:00:00']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.660644678
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.9
host_age
16.841366
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.47280734
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1073
host_subject_id
human respiratory
host_tissue_sampled
AGCTGTTGTTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:13:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.04676419
templateDNA_16SqPCR
21.64
templateDNA_16SqPCR_Cq
65929.6883
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-04-19T00:00:00
visit_date
7
visittotno
4.3304138
vllog
21400
vload
38.4
weight
G02
well
-1.3074551
zbmiuk
-2.1967165
zhauk
-2.1349592
zwauk
no
zymo_DNA