MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-02-08T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248067
External Id
0.818532801
FEV1FVC
-1.162864664
FEV1FVCZ
0.53
FEV1_baseline
42.11699496
FEVpcpred
0.647499979
FVC
-4.324714101
FVCZ
45.84419923
FVCpcpred
11379
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
32033
RawReads_ASVpipeline
SRS10620673
SRA accession
BSP0084
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Abnormal Sat
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.64
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0084
barcode
806rcbc315
barcode_806R
NCBI
broker name
160
cd4
2017-05-18
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-09-30T00:00:00
dateart
2013-09-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.63
duryart
2018-10-04T00:00:00
endfollowup
['2018-04-19T00:00:00', '2018-04-19T00:00:00']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-4.4220028
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.2
host_age
14.307405
host_body_mass_index
HIV-associated chronic lung disease
host_disease
42.11699496
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1074
host_subject_id
human respiratory
host_tissue_sampled
GGATGTAAGTAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.017208104
templateDNA_16SqPCR
23.19685329
templateDNA_16SqPCR_Cq
24260.54891
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2017-05-16T00:00:00
visit_date
7
visittotno
1.845098
vllog
70
vload
21.4
weight
C03
well
-1.276723
zbmiuk
-2.1006467
zhauk
-2.3406181
zwauk
no
zymo_DNA