MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-12-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246632
External Id
0.945244914
FEV1FVC
0.813853919
FEV1FVCZ
2.05
FEV1_baseline
80.2337305
FEVpcpred
2.168750048
FVC
-1.82920268
FVCZ
76.15327259
FVCpcpred
18566
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
39107
RawReads_ASVpipeline
SRS10548283
SRA accession
BSP0362
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
16.08
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0362
barcode
806rcbc324
barcode_806R
NCBI
broker name
736
cd4
2018-03-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-01-27T00:00:00
dateart
2016-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.17
duryart
2019-08-14T00:00:00
endfollowup
['2019-02-27T00:00:00', '2019-02-27T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.5081789
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.2
host_age
18.80587
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.2337305
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1198
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATAGGCGATCTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:01:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
2.538627144
templateDNA_16SqPCR
16.09707378
templateDNA_16SqPCR_Cq
3579039.75
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-26T00:00:00
visit_date
7
visittotno
1.6532125
vllog
45
vload
44.6
weight
D04
well
-1.0494189
zbmiuk
-1.5889088
zhauk
-1.9550074
zwauk
no
zymo_DNA