MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-11-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249001
External Id
0.843667163
FEV1FVC
-1.042935672
FEV1FVCZ
1.99000001
FEV1_baseline
84.60174262
FEVpcpred
2.358750105
FVC
-0.688639096
FVCZ
90.96233862
FVCpcpred
12681
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
35999
RawReads_ASVpipeline
SRS10550411
SRA accession
BSP0668
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
10.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0668
barcode
806rcbc295
barcode_806R
NCBI
broker name
2019-04-04
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-08-19T00:00:00
dateart
2013-06-13T00:00:00
datehiv
4.2
duryart
2019-04-04T00:00:00
endfollowup
['NA', '2018-10-02T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.180237498
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.4
host_age
18.918066
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.60174262
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1147
host_subject_id
human respiratory
host_tissue_sampled
CACGTCGATGGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:25:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.038404339
templateDNA_16SqPCR
21.83667028
templateDNA_16SqPCR_Cq
54143.69545
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-04-04T00:00:00
visit_date
7
visittotno
42
weight
G12
well
-0.7091704
zbmiuk
-2.3722842
zhauk
-2.1778333
zwauk
no
zymo_DNA