MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-03-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246904
External Id
0.890951268
FEV1FVC
-0.334301257
FEV1FVCZ
1.92
FEV1_baseline
83.92483544
FEVpcpred
2.154999971
FVC
-1.102017046
FVCZ
85.64514871
FVCpcpred
18110
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
40885
RawReads_ASVpipeline
SRS10548889
SRA accession
BYC128T3
Submitter Id
AAG
WRrepeats
AAG
WRrepeats_BP
no
acut_exac12m
Adherent
adherence
no
adm
10.29
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC128T3
barcode
806rcbc294
barcode_806R
NCBI
broker name
918
cd4
2018-02-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-06-15T00:00:00
dateart
2012-06-15T00:00:00
datehiv
5.66
duryart
2019-07-01T00:00:00
endfollowup
['2019-01-14T00:00:00', '2019-01-14T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.231395
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.9
host_age
19.813732
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.92483544
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3076
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTTTCTAGAGCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-01T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:17:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.049265172
templateDNA_16SqPCR
21.87277375
templateDNA_16SqPCR_Cq
69455.65
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-03T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
43.4
weight
F12
well
-0.23905379
zbmiuk
-2.4932714
zhauk
-1.7939779
zwauk
no
zymo_DNA