MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-07-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246884
External Id
0.79901761
FEV1FVC
-1.151572127
FEV1FVCZ
2.44
FEV1_baseline
74.44555014
FEVpcpred
3.053750038
FVC
-1.507125366
FVCZ
81.25122652
FVCpcpred
20072
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
47218
RawReads_ASVpipeline
SRS10549160
SRA accession
BYC104T3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
7.7
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYC104T3
barcode
806rcbc141
barcode_806R
NCBI
broker name
487
cd4
2016-11-17
collection_date
yes
cotrimoxazole
yes
cough_enrl
2005-03-25T00:00:00
dateart
42830
dod
11.65
duryart
2017-04-05T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2016-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
5
f24mrcscore
-1.9734808
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
19.3
host_age
16.833599
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.44555014
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3005
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTATTACGATCC
index_sequence
sputum
isolation_source
3 mths
lastvisit
2017-02-27T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
yes
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
meningitis cause not confirmed microbiologically
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:31:00
sp05time
death
study_complt_stat
yes
tbtreat
0.008126739
templateDNA_16SqPCR
24.67635236
templateDNA_16SqPCR_Cq
11457.34
templateDNA_16SqPCR_copies
human sputum metagenome
title
Died
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
no
visit018
no
visit1218
2016-11-10T00:00:00
visit_date
2
visittotno
5.1139436
vllog
130000
vload
45
weight
F05
well
-2.6425681
zbmiuk
-1.9785727
zhauk
-3.7389657
zwauk
no
zymo_DNA