MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-07-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108590
External Id
0.742810181
FEV1FVC
-2.247583972
FEV1FVCZ
1.129999995
FEV1_baseline
73.24787059
FEVpcpred
1.52125001
FVC
-0.900744908
FVCZ
88.5809391
FVCpcpred
17345
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
41106
RawReads_ASVpipeline
SRS10483977
SRA accession
BSP0082
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
4.94
ageyart
yes
all_3
yes
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0082
barcode
806rcbc98
barcode_806R
NCBI
broker name
601
cd4
2017-05-17
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-06-15T00:00:00
dateart
2008-09-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5
duryart
2017-11-01T00:00:00
endfollowup
['NA', '2017-05-17T00:00:00']
endtreatdate
2016-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.030202091
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
10.8
host_age
21.125214
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.24787059
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1001
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCGTCGATAATC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2017-11-01T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.128519871
templateDNA_16SqPCR
20.56786981
templateDNA_16SqPCR_Cq
181191.53
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-05-17T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
37.2
weight
C12
well
1.3423966
zbmiuk
-1.5570301
zhauk
0.24557695
zwauk
no
zymo_DNA