MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-08-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248996
External Id
0.764775938
FEV1FVC
-1.64255511
FEV1FVCZ
2.410000086
FEV1_baseline
78.33457768
FEVpcpred
3.151249886
FVC
-0.81921784
FVCZ
89.78249973
FVCpcpred
18370
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
35809
RawReads_ASVpipeline
SRS10550314
SRA accession
BSP0645
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
10.81
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0645
barcode
806rcbc298
barcode_806R
NCBI
broker name
695
cd4
2019-02-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-15T00:00:00
dateart
2008-08-11T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.77
duryart
2019-08-09T00:00:00
endfollowup
['NA', '2019-02-22T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.680756742
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
20.462029
host_body_mass_index
HIV-associated chronic lung disease
host_disease
78.33457768
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1195
host_subject_id
human respiratory
host_tissue_sampled
AACGCCGAATGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:25:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.008086742
templateDNA_16SqPCR
24.18
templateDNA_16SqPCR_Cq
11400.95357
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-02-22T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
51.6
weight
B01
well
-0.55909085
zbmiuk
-2.6523488
zhauk
-2.4459181
zwauk
no
zymo_DNA