MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-03-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246645
External Id
0.876203132
FEV1FVC
-0.5499064
FEV1FVCZ
1.65
FEV1_baseline
70.11663386
FEVpcpred
1.883124948
FVC
-2.140632574
FVCZ
72.59024587
FVCpcpred
12174
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:33Z
INSDC first public
2022-11-29T01:24:33Z
INSDC last update
public
INSDC status
42600
RawReads_ASVpipeline
SRS10548154
SRA accession
BSP0431
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
10.72
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0431
barcode
806rcbc39
barcode_806R
NCBI
broker name
403
cd4
2018-06-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-12-03T00:00:00
dateart
2013-11-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.56
duryart
2019-05-28T00:00:00
endfollowup
['2019-05-28T00:00:00', '2019-05-28T00:00:00']
endtreatdate
2018-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.2604437
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.2
host_age
20.888889
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.11663386
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1210
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AAGAGATGTCGA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:20:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.112461341
templateDNA_16SqPCR
20.76150233
templateDNA_16SqPCR_Cq
158551.68
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-06-21T00:00:00
visit_date
5
visittotno
2.593286
vllog
392
vload
47
weight
H04
well
0.29439688
zbmiuk
-2.0394273
zhauk
-0.977521
zwauk
no
zymo_DNA