MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-10-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108621
External Id
0.872218045
FEV1FVC
-0.396348992
FEV1FVCZ
2.180000067
FEV1_baseline
76.4994955
FEVpcpred
2.499375105
FVC
-1.677880412
FVCZ
78.06864005
FVCpcpred
14110
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
37463
RawReads_ASVpipeline
SRS10483889
SRA accession
BSP0319
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.63
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0319
barcode
806rcbc203
barcode_806R
NCBI
broker name
262
cd4
2018-02-23
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-05-20T00:00:00
dateart
2001-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.84
duryart
2018-08-10T00:00:00
endfollowup
['NA', '2018-02-23T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.786874394
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.3
host_age
25.041473
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.4994955
host_height
yes
host_hiv_stat
female
host_sex
B1060
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGAGGTTATCCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-10T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:20:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.07299
templateDNA_16SqPCR
21.41
templateDNA_16SqPCR_Cq
102903.69
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-23T00:00:00
visit_date
7
visittotno
5.3443923
vllog
221000
vload
65.8
weight
C01
well
1.1641862
zbmiuk
-0.2495736
zhauk
0.89116353
zwauk
no
zymo_DNA