MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-05-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248042
External Id
0.988350032
FEV1FVC
1.853190681
FEV1FVCZ
2.28
FEV1_baseline
76.862358
FEVpcpred
2.30687499
FVC
-2.539417501
FVCZ
68.61211102
FVCpcpred
17302
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
38817
RawReads_ASVpipeline
SRS10620647
SRA accession
BSP0016
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
15.09
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0016
barcode
806rcbc44
barcode_806R
NCBI
broker name
648
cd4
2016-09-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-15T00:00:00
dateart
2005-04-15T00:00:00
datehiv
1.29
duryart
2018-02-15T00:00:00
endfollowup
['2017-08-31T00:00:00', '2017-08-31T00:00:00']
endtreatdate
2016-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.7240598
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.3
host_age
17.72377
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.862358
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1016
host_subject_id
human respiratory
host_tissue_sampled
CGATCCGTATTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-15T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.005883347
templateDNA_16SqPCR
24.57271347
templateDNA_16SqPCR_Cq
8294.535404
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-09-20T00:00:00
visit_date
7
visittotno
5.1760912
vllog
150000
vload
45.6
weight
E05
well
-1.2232798
zbmiuk
-1.904804
zhauk
-2.1166537
zwauk
no
zymo_DNA