MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-12-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246734
External Id
0.784439155
FEV1FVC
-1.638368683
FEV1FVCZ
1.840000033
FEV1_baseline
71.39001578
FEVpcpred
2.345624924
FVC
-1.430750096
FVCZ
81.15737586
FVCpcpred
10404
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
43160
RawReads_ASVpipeline
SRS10548284
SRA accession
BSP0741
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
16.08
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0741
barcode
806rcbc348
barcode_806R
NCBI
broker name
2019-08-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-01-27T00:00:00
dateart
2016-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.17
duryart
2019-08-14T00:00:00
endfollowup
['NA', '2019-02-27T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.162205035
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.6
host_age
19.019491
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.39001578
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1198
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AACCTCGTCAAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.16
templateDNA_16SqPCR
20.16528604
templateDNA_16SqPCR_Cq
225995.64
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-08-14T00:00:00
visit_date
7
visittotno
45.4
weight
D07
well
-1.1119828
zbmiuk
-1.5121042
zhauk
-1.8754896
zwauk
no
zymo_DNA