MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-01-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248954
External Id
0.845442604
FEV1FVC
-1.00590333
FEV1FVCZ
1.200000048
FEV1_baseline
91.97684981
FEVpcpred
1.419374943
FVC
-0.145732883
FVCZ
98.12827169
FVCpcpred
16119
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
31731
RawReads_ASVpipeline
SRS10550378
SRA accession
BSP0493
Submitter Id
AC
WRrepeats
AC
WRrepeats_WP
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.87
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0493
barcode
806rcbc240
barcode_806R
NCBI
broker name
1131
cd4
2018-08-17
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-11-15T00:00:00
dateart
2012-09-06T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.83
duryart
2019-02-01T00:00:00
endfollowup
['NA', '2018-08-17T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-0.616541928
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.6
host_age
16.842062
host_body_mass_index
HIV-associated chronic lung disease
host_disease
91.97684981
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1121
host_subject_id
human respiratory
host_tissue_sampled
GGTAGGAACAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-01T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.0124
templateDNA_16SqPCR
23.49785904
templateDNA_16SqPCR_Cq
17495.99142
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-17T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
26.4
weight
H05
well
0.067986511
zbmiuk
-1.8028759
zhauk
-0.95521712
zwauk
no
zymo_DNA