MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246890
External Id
0.798510251
FEV1FVC
-1.573280099
FEV1FVCZ
1.34
FEV1_baseline
70.94808658
FEVpcpred
1.678125024
FVC
-1.620401755
FVCZ
79.56276641
FVCpcpred
23641
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
48789
RawReads_ASVpipeline
SRS10548925
SRA accession
BYC10LT3
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
7.45
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10LT3
barcode
806rcbc162
barcode_806R
NCBI
broker name
639
cd4
2017-04-19
collection_date
yes
cotrimoxazole
yes
cough_enrl
2012-11-02T00:00:00
dateart
2012-08-04T00:00:00
datehiv
4.46
duryart
2018-10-29T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.2000895
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.9
host_age
17.190933
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.94808658
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3021
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CTAGATTTGCCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-29T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
0
nadm
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:48:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.109134543
templateDNA_16SqPCR
20.77870601
templateDNA_16SqPCR_Cq
153861.46
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-03-24T00:00:00
visit_date
6
visittotno
0
vllog
0
vload
35.4
weight
C08
well
-0.39380503
zbmiuk
-0.80605441
zhauk
-0.64912182
zwauk
no
zymo_DNA