MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-11-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249134
External Id
0.959852292
FEV1FVC
1.232639601
FEV1FVCZ
1.3
FEV1_baseline
80.66245722
FEVpcpred
1.354375005
FVC
-1.953271317
FVCZ
75.53954277
FVCpcpred
6906
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
17828
RawReads_ASVpipeline
SRS10550494
SRA accession
BYC127T3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
8.59
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC127T3
barcode
806rcbc132
barcode_806R
NCBI
broker name
700
cd4
2018-02-12
collection_date
no
cough_enrl
2015-06-15T00:00:00
dateart
2015-06-15T00:00:00
datehiv
2.66
duryart
2019-07-01T00:00:00
endfollowup
['2019-01-14T00:00:00', '2019-01-14T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.4777062
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.2
host_age
14.046639
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.66245722
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3075
host_subject_id
human respiratory
host_tissue_sampled
ATCGCTCGAGGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-01T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:17:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.048318282
templateDNA_16SqPCR
21.60524321
templateDNA_16SqPCR_Cq
68120.69754
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-03T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
25.6
weight
E04
well
-2.0704949
zbmiuk
-1.5117838
zhauk
-2.1538835
zwauk
no
zymo_DNA