MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-12-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246935
External Id
0.729261605
FEV1FVC
-2.288147112
FEV1FVCZ
2
FEV1_baseline
77.08871006
FEVpcpred
2.742500067
FVC
-0.416919134
FVCZ
94.44935101
FVCpcpred
15298
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
36910
RawReads_ASVpipeline
SRS10548885
SRA accession
BYD13ZT3
Submitter Id
AAO
WRrepeats
AAO
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD13ZT3
barcode
806rcbc99
barcode_806R
NCBI
broker name
551
cd4
2019-01-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2019-03-28T00:00:00
endfollowup
['NA', '2019-01-03T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.741923684
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19
host_age
22.060354
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.08871006
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3065
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATTGGGCTAGGC
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-03-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:45:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.310792971
templateDNA_16SqPCR
19.28682697
templateDNA_16SqPCR_Cq
438166.12
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-03T00:00:00
visit_date
6
visittotno
4.1038036
vllog
12700
vload
53
weight
D12
well
0.20477222
zbmiuk
-1.4289073
zhauk
-0.64601707
zwauk
no
zymo_DNA