MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-09-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246898
External Id
0.875336373
FEV1FVC
-0.074871183
FEV1FVCZ
2.44
FEV1_baseline
79.41232953
FEVpcpred
2.787499905
FVC
-1.637743164
FVCZ
79.6937741
FVCpcpred
10198
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
31356
RawReads_ASVpipeline
SRS10548872
SRA accession
BYC11ET3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
4.76
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11ET3
barcode
806rcbc28
barcode_806R
NCBI
broker name
726
cd4
2017-10-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-06-15T00:00:00
dateart
2006-06-15T00:00:00
datehiv
11.3
duryart
2019-02-20T00:00:00
endfollowup
['2018-09-05T00:00:00', '2018-09-05T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
4
f24mrcscore
-1.5311676
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16
host_age
18.928448
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.41232953
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3051
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GACTTTCCCTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-20T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.071254245
templateDNA_16SqPCR
21.42354275
templateDNA_16SqPCR_Cq
100456.57
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
no
visit012
yes
visit018
no
visit1218
2017-09-30T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
50.6
weight
E03
well
-0.48097697
zbmiuk
-1.3336345
zhauk
-1.1801847
zwauk
no
zymo_DNA