MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-09-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248045
External Id
0.920014739
FEV1FVC
0.176546679
FEV1FVCZ
1.56
FEV1_baseline
67.82980312
FEVpcpred
1.695624948
FVC
-2.581683594
FVCZ
67.00299059
FVCpcpred
14146
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
31273
RawReads_ASVpipeline
SRS10620654
SRA accession
BSP0027
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
4.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0027
barcode
806rcbc32
barcode_806R
NCBI
broker name
780
cd4
2016-10-14
collection_date
yes
cotrimoxazole
yes
cough_enrl
2005-06-15T00:00:00
dateart
2005-02-15T00:00:00
datehiv
11.33
duryart
2018-03-02T00:00:00
endfollowup
['2017-09-15T00:00:00', '2017-09-15T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.4282713
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.1
host_age
16.410509
host_body_mass_index
HIV-associated chronic lung disease
host_disease
67.82980312
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1026
host_subject_id
human respiratory
host_tissue_sampled
CAGTGCATATGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:48:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.029957634
templateDNA_16SqPCR
22.1965862
templateDNA_16SqPCR_Cq
42235.25486
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-10-07T00:00:00
visit_date
7
visittotno
2.8744819
vllog
749
vload
35.8
weight
A04
well
-1.9996766
zbmiuk
-2.5609231
zhauk
-3.4183164
zwauk
no
zymo_DNA