MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-10-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246886
External Id
0.692614407
FEV1FVC
-2.496772546
FEV1FVCZ
2.28
FEV1_baseline
70.55986413
FEVpcpred
3.291874886
FVC
-0.866632306
FVCZ
89.20301502
FVCpcpred
21204
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
49334
RawReads_ASVpipeline
SRS10548891
SRA accession
BYC108T3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.03
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC108T3
barcode
806rcbc214
barcode_806R
NCBI
broker name
594
cd4
2016-01-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2004-11-08T00:00:00
dateart
12.16
duryart
2018-05-23T00:00:00
endfollowup
['2018-12-06T00:00:00', '2018-12-06T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.2380841
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.1
host_age
17.84034
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.55986413
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3008
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGACCGGTCAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-23T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
0
nadm
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.1922
templateDNA_16SqPCR
19.97
templateDNA_16SqPCR_Cq
270969.86
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-12-28T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
47.4
weight
F02
well
-1.660494
zbmiuk
-2.0269241
zhauk
-2.8424356
zwauk
no
zymo_DNA