MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-06-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250728
External Id
0.834216108
FEV1FVC
-0.834687046
FEV1FVCZ
1.89
FEV1_baseline
75.5006279
FEVpcpred
2.265599966
FVC
-1.578257178
FVCZ
80.45108231
FVCpcpred
27422
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:47Z
INSDC first public
2022-11-29T01:24:47Z
INSDC last update
public
INSDC status
38221
RawReads_ASVpipeline
SRS10620542
SRA accession
BSP0017
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
9.88
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0017
barcode
806rcbc30
barcode_806R
NCBI
broker name
592
cd4
2016-09-30
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-05-05T00:00:00
dateart
2011-04-15T00:00:00
datehiv
5.41
duryart
2018-02-22T00:00:00
endfollowup
['2017-09-01T00:00:00', '2017-09-01T00:00:00']
endtreatdate
2016-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.8048908
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.2
host_age
16.360231
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.5006279
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1017
host_subject_id
human respiratory
host_tissue_sampled
GTTGGTCAATCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:50:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.098451578
templateDNA_16SqPCR
21.04693011
templateDNA_16SqPCR_Cq
138800.2612
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-09-19T00:00:00
visit_date
7
visittotno
4.3483047
vllog
22300
vload
37.6
weight
G03
well
-1.7310858
zbmiuk
-2.355859
zhauk
-2.5073233
zwauk
no
zymo_DNA