MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-07-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108642
External Id
0.875391618
FEV1FVC
-0.316260266
FEV1FVCZ
2.269999981
FEV1_baseline
86.88162912
FEVpcpred
2.593125105
FVC
-0.878966775
FVCZ
88.33241145
FVCpcpred
4191
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
42240
RawReads_ASVpipeline
SRS10483928
SRA accession
BSP0413
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
14.17
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0413
barcode
806rcbc379
barcode_806R
NCBI
broker name
2018-05-31
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-09-09T00:00:00
dateart
2012-05-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.8
duryart
2018-11-15T00:00:00
endfollowup
['NA', '2018-05-31T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.004885261
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.8
host_age
23.821095
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.88162912
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1090
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CCTCCATGAGAA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-15T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
02:00:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.469086304
templateDNA_16SqPCR
18.58393824
templateDNA_16SqPCR_Cq
661333.25
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-31T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
57.6
weight
C11
well
0.70206255
zbmiuk
-1.3481348
zhauk
-0.060200259
zwauk
no
zymo_DNA