MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-01-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108589
External Id
0.821056608
FEV1FVC
-0.778780818
FEV1FVCZ
2.71
FEV1_baseline
73.9653553
FEVpcpred
3.300625086
FVC
-1.771293296
FVCZ
78.00293376
FVCpcpred
15058
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
40422
RawReads_ASVpipeline
SRS10483897
SRA accession
BSP0072
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
15.3
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0072
barcode
806rcbc130
barcode_806R
NCBI
broker name
493
cd4
2017-04-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-22T00:00:00
dateart
2007-05-15T00:00:00
datehiv
2.97
duryart
2018-08-27T00:00:00
endfollowup
['2018-03-12T00:00:00', '2018-03-12T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.9872032
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.2
host_age
19.267817
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.9653553
host_height
yes
host_hiv_stat
male
host_sex
B1065
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATGGTTGTTGGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:44:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.008454471
templateDNA_16SqPCR
24.61702581
templateDNA_16SqPCR_Cq
11919.39
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-04-06T00:00:00
visit_date
7
visittotno
3.1583624
vllog
1440
vload
57.6
weight
C04
well
-0.87774295
zbmiuk
-0.6164403
zhauk
-1.203719
zwauk
no
zymo_DNA