MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-12-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249020
External Id
0.839543683
FEV1FVC
-1.033462437
FEV1FVCZ
2.07
FEV1_baseline
79.15721873
FEVpcpred
2.465625048
FVC
-1.156530674
FVCZ
84.89884604
FVCpcpred
20221
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
38900
RawReads_ASVpipeline
SRS10550338
SRA accession
BSP0716
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.62
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0716
barcode
806rcbc194
barcode_806R
NCBI
broker name
547
cd4
2019-07-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-08-01T00:00:00
dateart
2015-07-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.01
duryart
2019-07-08T00:00:00
endfollowup
['NA', '2019-07-08T00:00:00']
endtreatdate
2018-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.58995366
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.5
host_age
21.966131
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.15721873
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1232
host_subject_id
human respiratory
host_tissue_sampled
TACGATGACCAC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-07-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:25:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.061956984
templateDNA_16SqPCR
21.24307827
templateDNA_16SqPCR_Cq
87348.98632
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-07-08T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
53.8
weight
C12
well
0.45936796
zbmiuk
-1.1450064
zhauk
-0.32760137
zwauk
no
zymo_DNA