MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-11-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108636
External Id
0.850385307
FEV1FVC
-0.693512092
FEV1FVCZ
2
FEV1_baseline
79.48344284
FEVpcpred
2.351875067
FVC
-1.270669951
FVCZ
83.18862107
FVCpcpred
13274
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
37293
RawReads_ASVpipeline
SRS10483915
SRA accession
BSP0395
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
16.48
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0395
barcode
806rcbc231
barcode_806R
NCBI
broker name
693
cd4
2018-05-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-30T00:00:00
dateart
2009-08-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.12
duryart
2018-10-29T00:00:00
endfollowup
['NA', '2018-05-14T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.560225902
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.5
host_age
19.530714
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.48344284
host_height
yes
host_hiv_stat
female
host_sex
B1082
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTCTGGGAACAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.020808213
templateDNA_16SqPCR
23.16081213
templateDNA_16SqPCR_Cq
29336.1
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-14T00:00:00
visit_date
7
visittotno
2.133539
vllog
136
vload
45.6
weight
G04
well
-0.95988089
zbmiuk
-1.7972349
zhauk
-1.8551744
zwauk
no
zymo_DNA