MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108606
External Id
0.836398878
FEV1FVC
-1.023872609
FEV1FVCZ
2.160000086
FEV1_baseline
82.77054654
FEVpcpred
2.582499981
FVC
-0.854049709
FVCZ
88.73423032
FVCpcpred
15774
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
72135
RawReads_ASVpipeline
SRS10483998
SRA accession
BSP0193
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
9.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0193
barcode
806rcbc254
barcode_806R
NCBI
broker name
171
cd4
2017-09-22
collection_date
no
cotrimoxazole
no
cough_enrl
2009-05-25T00:00:00
dateart
2009-02-03T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.41
duryart
2018-03-09T00:00:00
endfollowup
['NA', '2017-09-22T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.317762629
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18
host_age
21.394915
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.77054654
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1029
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TAAGGCCTATCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:51:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.187
templateDNA_16SqPCR
19.88292543
templateDNA_16SqPCR_Cq
263002.27
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-22T00:00:00
visit_date
7
visittotno
4.802774
vllog
63500
vload
51.8
weight
F07
well
0.074014969
zbmiuk
-1.3189056
zhauk
-0.76579118
zwauk
no
zymo_DNA