MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-04-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246913
External Id
0.870026506
FEV1FVC
-0.542387449
FEV1FVCZ
1.23
FEV1_baseline
76.02195557
FEVpcpred
1.413750052
FVC
-1.665415628
FVCZ
79.42502873
FVCpcpred
19000
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
55265
RawReads_ASVpipeline
SRS10548907
SRA accession
BYC138T3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
1.38
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC138T3
barcode
806rcbc166
barcode_806R
NCBI
broker name
1557
cd4
2018-04-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-08-17T00:00:00
dateart
2005-04-10T00:00:00
datehiv
12.65
duryart
2019-06-06T00:00:00
endfollowup
['2019-03-14T00:00:00', '2019-03-14T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.774026
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14
host_age
14.770508
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.02195557
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3093
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACTATTGTCACG
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-06-06T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2.1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:45:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.018429134
templateDNA_16SqPCR
23.44771558
templateDNA_16SqPCR_Cq
25982
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-03-31T00:00:00
visit_date
6
visittotno
3.8915374
vllog
7790
vload
24.2
weight
G08
well
-2.4738221
zbmiuk
-4.1647711
zhauk
-4.3834968
zwauk
no
zymo_DNA