MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-04-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250750
External Id
0.784859026
FEV1FVC
-1.873755391
FEV1FVCZ
1.269999981
FEV1_baseline
59.90382196
FEVpcpred
1.618124962
FVC
-2.372513752
FVCZ
69.71981605
FVCpcpred
14586
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:47Z
INSDC first public
2022-11-29T01:24:47Z
INSDC last update
public
INSDC status
27832
RawReads_ASVpipeline
SRS10620523
SRA accession
BSP0118
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
8.18
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0118
barcode
806rcbc330
barcode_806R
NCBI
broker name
919
cd4
2017-07-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-15T00:00:00
dateart
2009-01-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.15
duryart
2018-01-08T00:00:00
endfollowup
['NA', '2017-07-12T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-3.002036323
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.2
host_age
20.021868
host_body_mass_index
HIV-associated chronic lung disease
host_disease
59.90382196
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1007
host_subject_id
human respiratory
host_tissue_sampled
TACGTAGTTTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:25:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.061075788
templateDNA_16SqPCR
21.49148538
templateDNA_16SqPCR_Cq
86106.64727
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-12T00:00:00
visit_date
7
visittotno
4.5378189
vllog
34500
vload
41
weight
B05
well
-0.024878029
zbmiuk
-3.1493435
zhauk
-1.9713012
zwauk
no
zymo_DNA