MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-03-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246595
External Id
0.849185486
FEV1FVC
-0.324324144
FEV1FVCZ
3.03
FEV1_baseline
82.35288269
FEVpcpred
3.56812501
FVC
-1.308568055
FVCZ
83.70871806
FVCpcpred
16598
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
52648
RawReads_ASVpipeline
SRS10548282
SRA accession
BSP0137
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
9
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0137
barcode
806rcbc18
barcode_806R
NCBI
broker name
42
cd4
2017-08-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-03-10T00:00:00
dateart
2007-03-07T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.41
duryart
2018-12-21T00:00:00
endfollowup
['2018-07-10T00:00:00', '2018-07-10T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.3722516
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.4
host_age
21.043516
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.35288269
host_height
yes
host_hiv_stat
male
host_sex
B1103
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CACGCCATAATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-21T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.05833
templateDNA_16SqPCR
21.74
templateDNA_16SqPCR_Cq
82235.55
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-01T00:00:00
visit_date
7
visittotno
6.0293837
vllog
1070000
vload
62.4
weight
C02
well
-0.28318414
zbmiuk
-0.7311936
zhauk
-0.78114229
zwauk
no
zymo_DNA