MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246925
External Id
0.886746984
FEV1FVC
0.14928217
FEV1FVCZ
1.84
FEV1_baseline
73.809285
FEVpcpred
2.075000048
FVC
-2.188097751
FVCZ
73.01393003
FVCpcpred
9056
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
39398
RawReads_ASVpipeline
SRS10548936
SRA accession
BYD113T3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
12.55
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD113T3
barcode
806rcbc309
barcode_806R
NCBI
broker name
484
cd4
2018-08-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-01-03T00:00:00
dateart
2017-01-03T00:00:00
datehiv
0.65
duryart
2019-01-14T00:00:00
endfollowup
['NA', '2017-11-20T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.932116769
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.1
host_age
20.728409
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.809285
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3039
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATGCGTAGTGCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-14T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
1.228
templateDNA_16SqPCR
17.23
templateDNA_16SqPCR_Cq
1731274.65
templateDNA_16SqPCR_copies
human sputum metagenome
title
By Physician
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2018-08-08T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
49.8
weight
E02
well
0.78105879
zbmiuk
-1.0118594
zhauk
-0.030220361
zwauk
no
zymo_DNA