MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-10-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246683
External Id
0.886823766
FEV1FVC
-0.394444954
FEV1FVCZ
1.669999957
FEV1_baseline
87.8389942
FEVpcpred
1.883124948
FVC
-0.771378763
FVCZ
90.07779407
FVCpcpred
16343
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
43476
RawReads_ASVpipeline
SRS10548254
SRA accession
BSP0584
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
11.38
ageyart
yes
all_3
no
antibiotic12m
2
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0584
barcode
806rcbc161
barcode_806R
NCBI
broker name
1288
cd4
2019-01-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-02-28T00:00:00
dateart
2014-04-17T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
0.94
duryart
2019-06-25T00:00:00
endfollowup
['NA', '2019-01-08T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.934444545
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
13.2
host_age
19.033936
host_body_mass_index
HIV-associated chronic lung disease
host_disease
87.8389942
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1175
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TAAACCGCGTGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-25T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
morexella catarhalis blood culture positive
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.213863006
templateDNA_16SqPCR
19.76918265
templateDNA_16SqPCR_Cq
301511.08
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-08T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
37.2
weight
B08
well
0.043919642
zbmiuk
-2.436774
zhauk
-1.3504841
zwauk
no
zymo_DNA