MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-01-13T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
A
EXrepeats
SAMN22250803
External Id
23492
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
35016
RawReads_ASVpipeline
SRS10620583
SRA accession
EXrepeat_BSP0317B
Submitter Id
Not Adherent
adherence
no
adm
8.83
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0317
barcode
806rcbc127
barcode_806R
NCBI
broker name
2018-02-23
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-11-13T00:00:00
dateart
2009-10-15T00:00:00
datehiv
CIPROFLOXACIN
drug_usage
6.9
duryart
2018-02-23T00:00:00
endfollowup
['not applicable', '2017-09-07T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
17.1
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1019
host_subject_id
human respiratory
host_tissue_sampled
GGTCAGCTTAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
CIPROFLOXACIN
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
yes
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
EXrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
yes
tbtreat
0.020415267
templateDNA_16SqPCR
23.10929274
templateDNA_16SqPCR_Cq
28782.11247
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
7
visittotno
H03
well
no
zymo_DNA