MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-06-06T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248051
External Id
0.911721291
FEV1FVC
0.274291098
FEV1FVCZ
1.93
FEV1_baseline
74.47206237
FEVpcpred
2.116874933
FVC
-2.080727001
FVCZ
72.84556511
FVCpcpred
19909
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
42594
RawReads_ASVpipeline
SRS10620704
SRA accession
BSP0041
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
13
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0041
barcode
806rcbc82
barcode_806R
NCBI
broker name
884
cd4
2017-01-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-06T00:00:00
dateart
2007-06-06T00:00:00
datehiv
6.58
duryart
2018-05-22T00:00:00
endfollowup
['2017-12-05T00:00:00', '2017-12-05T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.9351143
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
17.421015
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.47206237
host_height
yes
host_hiv_stat
female
host_sex
B1039
host_subject_id
human respiratory
host_tissue_sampled
ACTGACAGCCAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:02:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.199263979
templateDNA_16SqPCR
19.42622853
templateDNA_16SqPCR_Cq
280928.8884
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-12-14T00:00:00
visit_date
7
visittotno
3.198657
vllog
1580
vload
41.8
weight
C10
well
-1.963361
zbmiuk
-1.4458601
zhauk
-2.5687087
zwauk
no
zymo_DNA