MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-11-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248916
External Id
0.92963201
FEV1FVC
0.743267795
FEV1FVCZ
0.9
FEV1_baseline
69.40292129
FEVpcpred
0.968124986
FVC
-2.697659804
FVCZ
66.3561943
FVCpcpred
23236
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
41558
RawReads_ASVpipeline
SRS10550406
SRA accession
BSP0220
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
8.86
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0220
barcode
806rcbc281
barcode_806R
NCBI
broker name
278
cd4
2017-10-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-09-20T00:00:00
dateart
2016-09-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
1.09
duryart
2019-03-12T00:00:00
endfollowup
['2018-09-25T00:00:00', '2018-09-25T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.4114811
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.9
host_age
15.416807
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.40292129
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1142
host_subject_id
human respiratory
host_tissue_sampled
AAGGTGTAAGGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:01:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
3.187163393
templateDNA_16SqPCR
15.33739004
templateDNA_16SqPCR_Cq
4493367.414
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-10-19T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
23.4
weight
A11
well
-0.60486376
zbmiuk
-2.4263833
zhauk
-2.0755551
zwauk
no
zymo_DNA