MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-06-13T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248966
External Id
0.779575111
FEV1FVC
-1.400668283
FEV1FVCZ
2.5
FEV1_baseline
75.39686653
FEVpcpred
3.206875086
FVC
-1.265800009
FVCZ
84.2384439
FVCpcpred
8237
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
25011
RawReads_ASVpipeline
SRS10550417
SRA accession
BSP0551
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
16.42
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0551
barcode
806rcbc106
barcode_806R
NCBI
broker name
414
cd4
2018-10-30
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-11-15T00:00:00
dateart
2015-09-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.04
duryart
2019-04-16T00:00:00
endfollowup
['NA', '2018-10-30T00:00:00']
endtreatdate
2017-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.902851633
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.3
host_age
17.336872
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.39686653
host_height
yes
host_hiv_stat
male
host_sex
B1153
host_subject_id
human respiratory
host_tissue_sampled
TGACCTCCAAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-16T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.232190316
templateDNA_16SqPCR
19.33
templateDNA_16SqPCR_Cq
327349.518
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-10-30T00:00:00
visit_date
7
visittotno
2.0293837
vllog
107
vload
46.8
weight
C01
well
-2.2914886
zbmiuk
-1.8638835
zhauk
-3.3537121
zwauk
no
zymo_DNA