MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-09-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249138
External Id
0.860072064
FEV1FVC
-0.337686168
FEV1FVCZ
1.94
FEV1_baseline
76.25114225
FEVpcpred
2.25562501
FVC
-1.775084876
FVCZ
78.05701184
FVCpcpred
20563
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:44Z
INSDC first public
2022-11-29T01:24:44Z
INSDC last update
public
INSDC status
39296
RawReads_ASVpipeline
SRS10550503
SRA accession
BYC12XT3
Submitter Id
AAH
WRrepeats
AAH
WRrepeats_WP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
10.78
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC12XT3
barcode
806rcbc351
barcode_806R
NCBI
broker name
781
cd4
2018-03-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-06-15T00:00:00
dateart
2014-06-15T00:00:00
datehiv
3.7
duryart
2019-05-20T00:00:00
endfollowup
['2019-02-25T00:00:00', '2019-02-25T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-1.7502401
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.5
host_age
14.570378
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.25114225
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3083
host_subject_id
human respiratory
host_tissue_sampled
GCTGGGTCATAT
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-05-20T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:20:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.026798802
templateDNA_16SqPCR
22.54542086
templateDNA_16SqPCR_Cq
37781.82874
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-03-17T00:00:00
visit_date
6
visittotno
1.9637878
vllog
92
vload
34.6
weight
G07
well
-2.841588
zbmiuk
-1.4070174
zhauk
-2.3850186
zwauk
no
zymo_DNA