MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-10-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108586
External Id
0.857000549
FEV1FVC
-0.704476999
FEV1FVCZ
2.15
FEV1_baseline
77.75807115
FEVpcpred
2.508749962
FVC
-1.439410554
FVCZ
81.1966727
FVCpcpred
16452
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
38309
RawReads_ASVpipeline
SRS10483887
SRA accession
BSP0064
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.63
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0064
barcode
806rcbc290
barcode_806R
NCBI
broker name
266
cd4
2017-03-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-05-20T00:00:00
dateart
2001-06-15T00:00:00
datehiv
6.84
duryart
2018-08-10T00:00:00
endfollowup
['2018-02-23T00:00:00', '2018-02-23T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.6941388
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.4
host_age
25.329271
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.75807115
host_height
yes
host_hiv_stat
female
host_sex
B1060
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TACGGTATGTCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-10T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:15:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
1.14
templateDNA_16SqPCR
17.17482678
templateDNA_16SqPCR_Cq
1610406.97
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-03-22T00:00:00
visit_date
7
visittotno
5.0293837
vllog
107000
vload
64.6
weight
B12
well
1.3202248
zbmiuk
-0.63254297
zhauk
0.82465208
zwauk
no
zymo_DNA