MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-10-06T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250753
External Id
0.835820953
FEV1FVC
-0.64521771
FEV1FVCZ
1.33
FEV1_baseline
73.94810805
FEVpcpred
1.591249943
FVC
-1.851191185
FVCZ
77.16838164
FVCpcpred
17528
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
29814
RawReads_ASVpipeline
SRS10620487
SRA accession
BSP0121
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
6.52
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0121
barcode
806rcbc223
barcode_806R
NCBI
broker name
80
cd4
2017-07-18
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-04-12T00:00:00
dateart
2012-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.26
duryart
2018-12-04T00:00:00
endfollowup
['2018-06-19T00:00:00', '2018-06-19T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.0228953
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.7
host_age
15.182384
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.94810805
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1096
host_subject_id
human respiratory
host_tissue_sampled
ATTCATGGACGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:03:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.014911813
templateDNA_16SqPCR
23.56029095
templateDNA_16SqPCR_Cq
21023.16329
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-13T00:00:00
visit_date
7
visittotno
5.4983106
vllog
315000
vload
29.8
weight
G03
well
-1.2922219
zbmiuk
-1.0029824
zhauk
-1.409125
zwauk
no
zymo_DNA