MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-04-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246929
External Id
0.888888881
FEV1FVC
0.038445876
FEV1FVCZ
1.42
FEV1_baseline
103.6074761
FEVpcpred
1.597499967
FVC
0.241484961
FVCZ
103.0755005
FVCpcpred
25307
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
58054
RawReads_ASVpipeline
SRS10548949
SRA accession
BYD11BT3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
7.26
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD11BT3
barcode
806rcbc213
barcode_806R
NCBI
broker name
1714
cd4
2018-09-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-08-02T00:00:00
dateart
2015-05-15T00:00:00
datehiv
1.17
duryart
2019-02-20T00:00:00
endfollowup
['NA', '2018-09-05T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
0.284556523
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.3
host_age
16.244032
host_body_mass_index
HIV-associated chronic lung disease
host_disease
103.6074761
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3049
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GATAGCTGTCTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-20T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.0001805
templateDNA_16SqPCR
30.27
templateDNA_16SqPCR_Cq
254.47
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-05T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
26.2
weight
E02
well
0.048038106
zbmiuk
-1.3631442
zhauk
-0.7736972
zwauk
no
zymo_DNA