MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-12-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108699
External Id
15405
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
49441
RawReads_ASVpipeline
SRS10483956
SRA accession
WRrepeat_BSP0604
Submitter Id
AP
WRrepeats
AP
WRrepeats_WP
Adherent
adherence
no
adm
6.46
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0604
barcode
806rcbc183
barcode_806R
NCBI
broker name
2019-01-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-06-03T00:00:00
dateart
2014-02-14T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.72
duryart
2019-07-09T00:00:00
endfollowup
['not applicable', '2019-01-22T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
11
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1182
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGTCACTGACAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
yes
tbtreat
0.215606833
templateDNA_16SqPCR
19.7569966
templateDNA_16SqPCR_Cq
303969.58
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
7
visittotno
H10
well
no
zymo_DNA