MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-11-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246622
External Id
0.90795355
FEV1FVC
-0.131030373
FEV1FVCZ
1.27
FEV1_baseline
76.05202467
FEVpcpred
1.398749948
FVC
-1.824241279
FVCZ
76.84291002
FVCpcpred
12940
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
36646
RawReads_ASVpipeline
SRS10548255
SRA accession
BSP0303
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.51
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0303
barcode
806rcbc180
barcode_806R
NCBI
broker name
533
cd4
2018-02-13
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-05-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.75
duryart
2019-07-02T00:00:00
endfollowup
['2019-01-15T00:00:00', '2019-01-15T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.8213047
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.2
host_age
18.389742
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.05202467
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1177
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GATTGGTTGCAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:31:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.124280369
templateDNA_16SqPCR
20.58369237
templateDNA_16SqPCR_Cq
175214.54
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-08T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
31.8
weight
E10
well
-0.23107915
zbmiuk
-3.6648171
zhauk
-2.3559175
zwauk
no
zymo_DNA