MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-02-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249030
External Id
0.74896439
FEV1FVC
-1.983332617
FEV1FVCZ
1.13
FEV1_baseline
72.42263914
FEVpcpred
1.508749962
FVC
-1.216943829
FVCZ
84.9136678
FVCpcpred
13373
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
27334
RawReads_ASVpipeline
SRS10550350
SRA accession
BYC10JT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
3.12
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10JT3
barcode
806rcbc128
barcode_806R
NCBI
broker name
807
cd4
2017-03-16
collection_date
yes
cotrimoxazole
yes
cough_enrl
2009-03-17T00:00:00
dateart
2009-06-15T00:00:00
datehiv
8
duryart
2018-11-19T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.1701171
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.1
host_age
16.528925
host_body_mass_index
HIV-associated chronic lung disease
host_disease
72.42263914
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3019
host_subject_id
human respiratory
host_tissue_sampled
ACGGCATGGCAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-19T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.017151647
templateDNA_16SqPCR
23.11404507
templateDNA_16SqPCR_Cq
24180.95347
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
yes
visit018
no
visit1218
2017-03-09T00:00:00
visit_date
7
visittotno
3.0086002
vllog
1020
vload
28.8
weight
A04
well
-0.22893296
zbmiuk
-1.7775973
zhauk
-1.2487088
zwauk
no
zymo_DNA