MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-06-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249128
External Id
0.787401587
FEV1FVC
-1.861577909
FEV1FVCZ
0.75
FEV1_baseline
48.24791166
FEVpcpred
0.952499986
FVC
-3.56985216
FVCZ
56.00923475
FVCpcpred
18748
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
38736
RawReads_ASVpipeline
SRS10550475
SRA accession
BYC11UT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
8.31
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11UT3
barcode
806rcbc166
barcode_806R
NCBI
broker name
499
cd4
2017-12-04
collection_date
no
cotrimoxazole
no
cough_enrl
2013-10-01T00:00:00
dateart
2013-10-01T00:00:00
datehiv
4.18
duryart
2019-04-29T00:00:00
endfollowup
['2018-11-05T00:00:00', '2018-11-05T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-3.8249307
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
12.4
host_age
16.946096
host_body_mass_index
HIV-associated chronic lung disease
host_disease
48.24791166
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3060
host_subject_id
human respiratory
host_tissue_sampled
ACTATTGTCACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-29T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
severe anaemia
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
1.595258851
templateDNA_16SqPCR
16.51105864
templateDNA_16SqPCR_Cq
2249048.215
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-29T00:00:00
visit_date
7
visittotno
4.9100904
vllog
81300
vload
28.2
weight
G08
well
-0.68827152
zbmiuk
-3.322525
zhauk
-2.4355707
zwauk
no
zymo_DNA