MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-09-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248078
External Id
0.878233422
FEV1FVC
-0.459678055
FEV1FVCZ
1.74000001
FEV1_baseline
69.98104475
FEVpcpred
1.981250048
FVC
-2.175489867
FVCZ
71.91389635
FVCpcpred
21190
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
42327
RawReads_ASVpipeline
SRS10620657
SRA accession
BSP0182
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
4.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0182
barcode
806rcbc40
barcode_806R
NCBI
broker name
840
cd4
2017-09-15
collection_date
yes
cotrimoxazole
yes
cough_enrl
2005-06-15T00:00:00
dateart
2005-02-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.33
duryart
2018-03-02T00:00:00
endfollowup
['NA', '2017-09-15T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.270394016
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17
host_age
18.14566
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.98104475
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1026
host_subject_id
human respiratory
host_tissue_sampled
TCCAAAGTGTTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.028511724
templateDNA_16SqPCR
22.26860366
templateDNA_16SqPCR_Cq
40196.76237
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-15T00:00:00
visit_date
7
visittotno
2.5751879
vllog
376
vload
42.2
weight
A05
well
-1.1961691
zbmiuk
-1.8191235
zhauk
-2.2709906
zwauk
no
zymo_DNA