MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-08-25T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108603
External Id
0.758474594
FEV1FVC
-1.865645237
FEV1FVCZ
1.789999962
FEV1_baseline
68.09756834
FEVpcpred
2.359999895
FVC
-1.604541775
FVCZ
80.06427121
FVCpcpred
14964
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
42933
RawReads_ASVpipeline
SRS10483991
SRA accession
BSP0174
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.14
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0174
barcode
806rcbc76
barcode_806R
NCBI
broker name
887
cd4
2017-09-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-10-16T00:00:00
dateart
2001-06-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.99
duryart
2018-02-27T00:00:00
endfollowup
['NA', '2017-09-12T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.416835339
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18
host_age
16.553602
host_body_mass_index
HIV-associated chronic lung disease
host_disease
68.09756834
host_height
yes
host_hiv_stat
male
host_sex
B1022
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CTTCGGCAGAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.00246433
templateDNA_16SqPCR
26.30422716
templateDNA_16SqPCR_Cq
3474.29
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-12T00:00:00
visit_date
7
visittotno
3.4885507
vllog
3080
vload
36.8
weight
E09
well
-2.4982247
zbmiuk
-3.9994547
zhauk
-5.2362499
zwauk
no
zymo_DNA