MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-05-26T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246673
External Id
0.870100594
FEV1FVC
-0.159749624
FEV1FVCZ
2.650000095
FEV1_baseline
82.46259088
FEVpcpred
3.045624971
FVC
-1.367361143
FVCZ
82.99289361
FVCpcpred
15289
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
36986
RawReads_ASVpipeline
SRS10548229
SRA accession
BSP0535
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
3.85
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0535
barcode
806rcbc289
barcode_806R
NCBI
broker name
454
cd4
2018-09-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2004-04-02T00:00:00
dateart
2001-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
13.57
duryart
2019-03-14T00:00:00
endfollowup
['NA', '2018-09-27T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.348790135
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.3
host_age
17.259306
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.46259088
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1145
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GAGAGAATGATC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.179873868
templateDNA_16SqPCR
19.93737748
templateDNA_16SqPCR_Cq
253592.07
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-27T00:00:00
visit_date
7
visittotno
3.1846914
vllog
1530
vload
45.8
weight
A12
well
-2.0784819
zbmiuk
-2.0513976
zhauk
-3.2230458
zwauk
no
zymo_DNA