MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-12-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108646
External Id
0.869054586
FEV1FVC
-0.440586254
FEV1FVCZ
1.85
FEV1_baseline
71.28775522
FEVpcpred
2.128750086
FVC
-2.058550586
FVCZ
73.11856805
FVCpcpred
14529
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
40854
RawReads_ASVpipeline
SRS10483883
SRA accession
BSP0448
Submitter Id
X
WRrepeats
X
WRrepeats_BP
no
acut_exac12m
Adherent
adherence
no
adm
10.7
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0448
barcode
806rcbc56
barcode_806R
NCBI
broker name
2018-07-09
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-08-28T00:00:00
dateart
2009-08-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.48
duryart
2018-07-09T00:00:00
endfollowup
['NA', '2018-01-22T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.169737883
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
19.812695
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.28775522
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1054
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGTAGAGGGATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:30:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.420752525
templateDNA_16SqPCR
18.84738005
templateDNA_16SqPCR_Cq
593190.7
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-07-09T00:00:00
visit_date
7
visittotno
4.5563025
vllog
36000
vload
47.6
weight
A07
well
-0.73549092
zbmiuk
-1.42931
zhauk
-1.4910641
zwauk
no
zymo_DNA