E
BRrepeats
MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-11-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250712
External Id
16292
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
29210
RawReads_ASVpipeline
SRS10620489
SRA accession
BRrepeat_R2_BSP0225
Submitter Id
Adherent
adherence
no
adm
10.78
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0225
barcode
806rcbc246
barcode_806R
NCBI
broker name
2017-10-31
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-08-19T00:00:00
dateart
2013-06-13T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.2
duryart
2019-04-04T00:00:00
endfollowup
['not applicable', '2018-10-02T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
14.9
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1147
host_subject_id
human respiratory
host_tissue_sampled
ATCTCTGGCATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
BRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
yes
tbtreat
0.306233435
templateDNA_16SqPCR
19.10922779
templateDNA_16SqPCR_Cq
431737.9343
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
7
visittotno
F06
well
no
zymo_DNA