MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-08-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108581
External Id
0.803627515
FEV1FVC
-1.545279727
FEV1FVCZ
1.44
FEV1_baseline
65.7301533
FEVpcpred
1.791875005
FVC
-1.990008156
FVCZ
74.09843042
FVCpcpred
22594
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
58826
RawReads_ASVpipeline
SRS10484017
SRA accession
BSP0046
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
14.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0046
barcode
806rcbc326
barcode_806R
NCBI
broker name
793
cd4
2017-01-12
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-04-29T00:00:00
dateart
2010-05-05T00:00:00
datehiv
3.71
duryart
2018-05-31T00:00:00
endfollowup
['2017-12-14T00:00:00', '2017-12-14T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.5791602
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.4
host_age
19.896383
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.7301533
host_height
yes
host_hiv_stat
female
host_sex
B1044
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGCTGCTTAACA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-31T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:02:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.172624572
templateDNA_16SqPCR
20.05619322
templateDNA_16SqPCR_Cq
243371.78
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-01-10T00:00:00
visit_date
7
visittotno
2.4456041
vllog
279
vload
40.8
weight
F04
well
-0.56817436
zbmiuk
-3.3784616
zhauk
-2.7161508
zwauk
no
zymo_DNA