MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-06-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108613
External Id
0.837837833
FEV1FVC
-0.826737664
FEV1FVCZ
1.860000014
FEV1_baseline
67.93964546
FEVpcpred
2.220000029
FVC
-2.160023243
FVCZ
71.76300033
FVCpcpred
11657
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
46209
RawReads_ASVpipeline
SRS10484014
SRA accession
BSP0249
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
14.23
ageyart
yes
all_3
yes
antibiotic12m
2
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0249
barcode
806rcbc382
barcode_806R
NCBI
broker name
286
cd4
2017-12-11
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-08-26T00:00:00
dateart
2010-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.37
duryart
2018-05-28T00:00:00
endfollowup
['NA', '2017-12-11T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.412004898
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.5
host_age
19.144812
host_body_mass_index
HIV-associated chronic lung disease
host_disease
67.93964546
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1043
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GAGTTGTCACGG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:36:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.026427911
templateDNA_16SqPCR
22.82009048
templateDNA_16SqPCR_Cq
37258.94
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-12-11T00:00:00
visit_date
7
visittotno
3.0334237
vllog
1080
vload
48.4
weight
F11
well
-1.144277
zbmiuk
-0.77024293
zhauk
-1.3749892
zwauk
no
zymo_DNA