MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-03-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250782
External Id
20067
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
33413
RawReads_ASVpipeline
SRS10620449
SRA accession
BSP0365
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.24
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0365
barcode
806rcbc235
barcode_806R
NCBI
broker name
708
cd4
2018-04-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-25T00:00:00
dateart
2015-06-10T00:00:00
datehiv
43193
dow
COTRIMOXAZOLE
drug_usage
1.59
duryart
2018-04-03T00:00:00
endfollowup
['NA', '2018-01-02T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1046
host_subject_id
human respiratory
host_tissue_sampled
TAGAACTCACCT
index_sequence
sputum
isolation_source
unscheduled
lastvisit
2018-04-03T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:16:00
sp05time
withdrawal
study_complt_stat
no
tbtreat
0.020888902
templateDNA_16SqPCR
23.06386538
templateDNA_16SqPCR_Cq
29449.85866
templateDNA_16SqPCR_copies
human sputum metagenome
title
Moved away
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2018-01-10T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
C05
well
no
zymo_DNA