MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108694
External Id
8414
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
41367
RawReads_ASVpipeline
SRS10483952
SRA accession
WRrepeat_BSP0459
Submitter Id
Y
WRrepeats
Y
WRrepeats_WP
no
adm
11.67
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0459
barcode
806rcbc288
barcode_806R
NCBI
broker name
2018-07-17
collection_date
yes
cotrimoxazole
2011-05-18T00:00:00
dateart
2011-05-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.16
duryart
['not applicable', 'not applicable']
endtreatdate
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
comparison group
group
Homo sapiens
host
18.8
host_age
No HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
C141
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGCAACCTCAGA
index_sequence
sputum
isolation_source
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
yes
tbtreat
0.027414746
templateDNA_16SqPCR
22.74873697
templateDNA_16SqPCR_Cq
38650.21
templateDNA_16SqPCR_copies
human sputum metagenome
title
Week 0
visit
H11
well
no
zymo_DNA