MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-02-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108576
External Id
0.954446846
FEV1FVC
1.059683205
FEV1FVCZ
1.65
FEV1_baseline
66.17993527
FEVpcpred
1.72874999
FVC
-2.950434402
FVCZ
61.95641717
FVCpcpred
17489
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
51105
RawReads_ASVpipeline
SRS10483999
SRA accession
BSP0034
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
9.4
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0034
barcode
806rcbc271
barcode_806R
NCBI
broker name
319
cd4
2016-10-31
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-07-11T00:00:00
dateart
2006-05-15T00:00:00
datehiv
10.31
duryart
2018-03-19T00:00:00
endfollowup
['2017-10-02T00:00:00', '2017-10-02T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.5428793
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.7
host_age
17.376713
host_body_mass_index
HIV-associated chronic lung disease
host_disease
66.17993527
host_height
yes
host_hiv_stat
female
host_sex
B1032
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACCCGTATGATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-19T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:47:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.16557943
templateDNA_16SqPCR
20.06112686
templateDNA_16SqPCR_Cq
233439.31
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-10-25T00:00:00
visit_date
7
visittotno
3.4857213
vllog
3060
vload
40.2
weight
G09
well
-2.0044358
zbmiuk
-1.9094987
zhauk
-2.9129457
zwauk
no
zymo_DNA