MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-05-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246943
External Id
21425
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
53370
RawReads_ASVpipeline
SRS10548904
SRA accession
BYD14NT3
Submitter Id
AAQ
WRrepeats
AAQ
WRrepeats_WP
no
acut_exac12m
Not Adherent
adherence
no
adm
6.61
ageyart
no
all_3
yes
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD14NT3
barcode
806rcbc46
barcode_806R
NCBI
broker name
246
cd4
2019-03-13
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-12-20T00:00:00
dateart
2005-12-20T00:00:00
datehiv
12.3
duryart
2019-06-03T00:00:00
endfollowup
['NA', '2018-12-10T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
4
f24mrcscore
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.8
host_age
26.417706
host_body_mass_index
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3088
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCCGAATTCACA
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-06-03T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['NA', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:29:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.002293711
templateDNA_16SqPCR
26.40831418
templateDNA_16SqPCR_Cq
3233.75
templateDNA_16SqPCR_copies
human sputum metagenome
title
By Physician
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-03-13T00:00:00
visit_date
6
visittotno
3.0681858
vllog
1170
vload
54.4
weight
G05
well
1.4028693
zbmiuk
-3.3354092
zhauk
-0.47338852
zwauk
no
zymo_DNA