MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-01-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250796
External Id
0.87331145
FEV1FVC
0.063967844
FEV1FVCZ
2.99000001
FEV1_baseline
78.63566739
FEVpcpred
3.423749924
FVC
-1.799943936
FVCZ
77.64376583
FVCpcpred
17778
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
28659
RawReads_ASVpipeline
SRS10620464
SRA accession
BSP0530
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
10.61
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0530
barcode
806rcbc262
barcode_806R
NCBI
broker name
2018-09-21
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-09-09T00:00:00
dateart
2009-09-19T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.65
duryart
2018-09-21T00:00:00
endfollowup
['NA', '2018-04-06T00:00:00']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.644230454
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.6
host_age
19.177538
host_body_mass_index
HIV-associated chronic lung disease
host_disease
78.63566739
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1068
host_subject_id
human respiratory
host_tissue_sampled
CCTTAAGTCAGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-09-21T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:41:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.04574057
templateDNA_16SqPCR
21.90953864
templateDNA_16SqPCR_Cq
64486.55484
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-21T00:00:00
visit_date
7
visittotno
59
weight
F08
well
-1.0099274
zbmiuk
-0.26797515
zhauk
-1.0987247
zwauk
no
zymo_DNA