MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-09-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246592
External Id
0.879684159
FEV1FVC
-0.039513743
FEV1FVCZ
1.27
FEV1_baseline
79.04350359
FEVpcpred
1.443699956
FVC
-1.681363533
FVCZ
79.25475373
FVCpcpred
8271
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
45993
RawReads_ASVpipeline
SRS10548213
SRA accession
BSP0131
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.36
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0131
barcode
806rcbc19
barcode_806R
NCBI
broker name
779
cd4
2017-08-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-01-15T00:00:00
dateart
2011-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.55
duryart
2018-12-13T00:00:00
endfollowup
['2018-07-05T00:00:00', '2018-07-05T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.6269472
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.9
host_age
15.060232
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.04350359
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1101
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CAGGCGTATTGG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-13T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:18:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.05849
templateDNA_16SqPCR
21.73
templateDNA_16SqPCR_Cq
82461.12
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
yes
visit018
no
visit1218
2017-07-26T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
26.6
weight
D02
well
-1.4261898
zbmiuk
-2.0972326
zhauk
-2.3220158
zwauk
no
zymo_DNA