MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-10-08T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246687
External Id
0.750249408
FEV1FVC
-1.908054587
FEV1FVCZ
1.409999967
FEV1_baseline
81.85448256
FEVpcpred
1.879374981
FVC
-0.393643005
FVCZ
95.11143991
FVCpcpred
12975
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
38148
RawReads_ASVpipeline
SRS10548206
SRA accession
BSP0601
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
1.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0601
barcode
806rcbc216
barcode_806R
NCBI
broker name
2019-01-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2008-02-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.22
duryart
2019-01-22T00:00:00
endfollowup
['NA', '2018-08-07T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.43030431
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.2
host_age
13.508391
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.85448256
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1111
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CCTCTACCTACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.02455
templateDNA_16SqPCR
23.02
templateDNA_16SqPCR_Cq
34611.39
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-22T00:00:00
visit_date
7
visittotno
25.8
weight
H02
well
-2.5553675
zbmiuk
-0.96334976
zhauk
-2.1798208
zwauk
no
zymo_DNA