MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-08-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248936
External Id
0.844196143
FEV1FVC
-0.727916044
FEV1FVCZ
1.7
FEV1_baseline
65.0268913
FEVpcpred
2.013750076
FVC
-2.532776427
FVCZ
68.63210596
FVCpcpred
12995
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
28244
RawReads_ASVpipeline
SRS10550318
SRA accession
BSP0372
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
11.33
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0372
barcode
806rcbc253
barcode_806R
NCBI
broker name
306
cd4
2018-04-09
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-12-15T00:00:00
dateart
2010-09-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.32
duryart
2019-06-03T00:00:00
endfollowup
['2019-03-11T00:00:00', '2019-03-11T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.6610308
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.6
host_age
17.439737
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.0268913
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1202
host_subject_id
human respiratory
host_tissue_sampled
ACCGGCTAGAGT
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-06-03T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.334833277
templateDNA_16SqPCR
18.65121552
templateDNA_16SqPCR_Cq
472058.929
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-04-05T00:00:00
visit_date
6
visittotno
3.3201463
vllog
2090
vload
38.2
weight
E07
well
-2.037874
zbmiuk
-4.1947651
zhauk
-5.1889601
zwauk
no
zymo_DNA