MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246618
External Id
0.867189247
FEV1FVC
-0.129056501
FEV1FVCZ
2.42
FEV1_baseline
69.6990929
FEVpcpred
2.790625095
FVC
-2.42963615
FVCZ
69.90206626
FVCpcpred
14106
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
42440
RawReads_ASVpipeline
SRS10548249
SRA accession
BSP0289
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.57
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0289
barcode
806rcbc115
barcode_806R
NCBI
broker name
483
cd4
2018-02-01
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-04-03T00:00:00
dateart
2006-07-24T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.83
duryart
2019-06-20T00:00:00
endfollowup
['2019-01-03T00:00:00', '2019-01-03T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.3080287
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.4
host_age
18.974205
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.6990929
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1169
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATACCTTCGGTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-20T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.03959
templateDNA_16SqPCR
22.31
templateDNA_16SqPCR_Cq
55815.28
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-23T00:00:00
visit_date
7
visittotno
1.6434526
vllog
44
vload
54
weight
D02
well
-1.0622969
zbmiuk
-1.2238618
zhauk
-1.7749079
zwauk
no
zymo_DNA