MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-11-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248985
External Id
14119
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
38588
RawReads_ASVpipeline
SRS10550453
SRA accession
BSP0609
Submitter Id
Abnormal HR
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Not Adherent
adherence
no
adm
10.86
ageyart
yes
all_3
yes
antibiotic12m
2
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0609
barcode
806rcbc65
barcode_806R
NCBI
broker name
187
cd4
2019-01-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-09-15T00:00:00
dateart
2010-01-15T00:00:00
datehiv
6.44
duryart
2019-07-11T00:00:00
endfollowup
['NA', '2018-11-01T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.2
host_age
14.046554
host_body_mass_index
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1183
host_subject_id
human respiratory
host_tissue_sampled
GAAGTTGGAAGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-11T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.432232475
templateDNA_16SqPCR
18.29525496
templateDNA_16SqPCR_Cq
609375.5096
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-24T00:00:00
visit_date
7
visittotno
3.3180633
vllog
2080
vload
34.8
weight
B08
well
-4.8432112
zbmiuk
-2.8302166
zhauk
-5.949472
zwauk
no
zymo_DNA