MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-03-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108701
External Id
12478
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
34041
RawReads_ASVpipeline
SRS10483959
SRA accession
WRrepeat_BSP0676
Submitter Id
AT
WRrepeats
AT
WRrepeats_WP
Adherent
adherence
no
adm
10.72
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0676
barcode
806rcbc95
barcode_806R
NCBI
broker name
2019-05-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-12-03T00:00:00
dateart
2013-11-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.56
duryart
2019-05-28T00:00:00
endfollowup
['not applicable', '2019-05-28T00:00:00']
endtreatdate
2018-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
16.2
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1210
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTACGTGGGATC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
yes
tbtreat
0.465409137
templateDNA_16SqPCR
18.70104364
templateDNA_16SqPCR_Cq
656149.06
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
5
visittotno
H11
well
no
zymo_DNA