MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-06-06T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248085
External Id
0.902743062
FEV1FVC
0.193365823
FEV1FVCZ
1.809999943
FEV1_baseline
68.83774806
FEVpcpred
2.005000114
FVC
-2.484559379
FVCZ
67.67126835
FVCpcpred
14984
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
37609
RawReads_ASVpipeline
SRS10620702
SRA accession
BSP0246
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
13
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0246
barcode
806rcbc90
barcode_806R
NCBI
broker name
620
cd4
2017-12-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-06T00:00:00
dateart
2007-06-06T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.58
duryart
2018-05-22T00:00:00
endfollowup
['NA', '2017-12-05T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.346544119
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.5
host_age
17.094017
host_body_mass_index
HIV-associated chronic lung disease
host_disease
68.83774806
host_height
yes
host_hiv_stat
female
host_sex
B1039
host_subject_id
human respiratory
host_tissue_sampled
CAGCGGTGACAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.006875153
templateDNA_16SqPCR
24.34638695
templateDNA_16SqPCR_Cq
9692.81587
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-12-07T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
41.6
weight
C11
well
-2.2707844
zbmiuk
-1.2671745
zhauk
-2.6295321
zwauk
no
zymo_DNA