MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-08-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246590
External Id
0.885169722
FEV1FVC
0.120744932
FEV1FVCZ
1.19
FEV1_baseline
69.8512702
FEVpcpred
1.344375014
FVC
-2.499591813
FVCZ
69.25714217
FVCpcpred
14194
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
39773
RawReads_ASVpipeline
SRS10548140
SRA accession
BSP0115
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.12
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0115
barcode
806rcbc259
barcode_806R
NCBI
broker name
728
cd4
2017-07-11
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-09-25T00:00:00
dateart
2007-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
1.79
duryart
2018-12-07T00:00:00
endfollowup
['2018-06-12T00:00:00', '2018-06-12T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.3273685
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.9
host_age
15.886434
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.8512702
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1093
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TACGTCCCGTTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-07T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:35:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.018017129
templateDNA_16SqPCR
23.37605297
templateDNA_16SqPCR_Cq
25401.14
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-06T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
29.6
weight
C08
well
-0.85228664
zbmiuk
-1.5946016
zhauk
-1.5389141
zwauk
no
zymo_DNA