MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-03-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246737
External Id
0.841148097
FEV1FVC
-0.866082701
FEV1FVCZ
1.850000024
FEV1_baseline
69.84732434
FEVpcpred
2.199374914
FVC
-1.992718222
FVCZ
73.96878692
FVCpcpred
9568
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
38515
RawReads_ASVpipeline
SRS10548146
SRA accession
BSP0747
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.67
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0747
barcode
806rcbc116
barcode_806R
NCBI
broker name
2019-08-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-11-15T00:00:00
dateart
2011-11-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.4
duryart
2019-08-27T00:00:00
endfollowup
['NA', '2019-03-12T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.275954729
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
19.4
host_age
20.659595
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.84732434
host_height
yes
host_hiv_stat
female
host_sex
B1204
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GAATGATGAGTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
anaemia
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:45:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.5963
templateDNA_16SqPCR
18.3
templateDNA_16SqPCR_Cq
840683.28
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-08-27T00:00:00
visit_date
6
visittotno
5.2624512
vllog
183000
vload
50.6
weight
E02
well
-0.36335844
zbmiuk
-1.1806581
zhauk
-1.0096359
zwauk
no
zymo_DNA