MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-02-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249160
External Id
0.992435675
FEV1FVC
1.971411501
FEV1FVCZ
1.64
FEV1_baseline
54.46998686
FEVpcpred
1.652500033
FVC
-4.069500531
FVCZ
48.76892871
FVCpcpred
17708
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
40860
RawReads_ASVpipeline
SRS10550490
SRA accession
BYD145T3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
4.31
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD145T3
barcode
806rcbc21
barcode_806R
NCBI
broker name
435
cd4
2019-01-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-06-15T00:00:00
dateart
2002-03-10T00:00:00
datehiv
12.64
duryart
2019-06-17T00:00:00
endfollowup
['NA', '2019-01-07T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-3.387624128
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.8
host_age
16.016016
host_body_mass_index
HIV-associated chronic lung disease
host_disease
54.46998686
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3069
host_subject_id
human respiratory
host_tissue_sampled
GCTGATGAGCTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-17T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.007725025
templateDNA_16SqPCR
24.25
templateDNA_16SqPCR_Cq
10890.99357
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-01-07T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
44.4
weight
F02
well
-2.6096926
zbmiuk
0.48536736
zhauk
-1.9610972
zwauk
no
zymo_DNA