MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-25T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246702
External Id
0.919963211
FEV1FVC
0.116050865
FEV1FVCZ
1.25
FEV1_baseline
66.77509656
FEVpcpred
1.358749986
FVC
-2.667518499
FVCZ
66.39892185
FVCpcpred
17432
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
38063
RawReads_ASVpipeline
SRS10548290
SRA accession
BSP0656
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.52
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0656
barcode
806rcbc278
barcode_806R
NCBI
broker name
684
cd4
2019-03-11
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-12-03T00:00:00
dateart
2011-11-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.35
duryart
2019-08-26T00:00:00
endfollowup
['NA', '2019-03-11T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.50458947
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.7
host_age
13.328926
host_body_mass_index
HIV-associated chronic lung disease
host_disease
66.77509656
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1203
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CAACGGGTAGTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:25:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.599125891
templateDNA_16SqPCR
18.13920736
templateDNA_16SqPCR_Cq
844667.32
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-03-11T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
25.2
weight
F10
well
-3.6427934
zbmiuk
-3.2245247
zhauk
-4.4707289
zwauk
no
zymo_DNA