MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-07-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248086
External Id
0.875459401
FEV1FVC
0.09442437
FEV1FVCZ
2.680000067
FEV1_baseline
75.26384769
FEVpcpred
3.061249971
FVC
-2.073396125
FVCZ
74.23752691
FVCpcpred
8689
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
23141
RawReads_ASVpipeline
SRS10620713
SRA accession
BSP0247
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
11.22
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0247
barcode
806rcbc187
barcode_806R
NCBI
broker name
140
cd4
2017-12-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-10-08T00:00:00
dateart
2007-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.25
duryart
2018-05-29T00:00:00
endfollowup
['NA', '2017-12-08T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.922512932
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.3
host_age
19.770412
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.26384769
host_height
yes
host_hiv_stat
male
host_sex
B1042
host_subject_id
human respiratory
host_tissue_sampled
AGCCGGCACATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:47:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.112483919
templateDNA_16SqPCR
20.37431867
templateDNA_16SqPCR_Cq
158583.5161
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-12-08T00:00:00
visit_date
7
visittotno
4.8998203
vllog
79400
vload
56.6
weight
D11
well
-1.0667034
zbmiuk
-1.1822392
zhauk
-1.7486433
zwauk
no
zymo_DNA