MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-08-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248041
External Id
0.984707204
FEV1FVC
1.494453538
FEV1FVCZ
1.65
FEV1_baseline
70.11036638
FEVpcpred
1.675624967
FVC
-2.777531085
FVCZ
64.60948745
FVCpcpred
17524
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
37543
RawReads_ASVpipeline
SRS10620642
SRA accession
BSP0010
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
9.35
ageyart
yes
all_3
yes
antibiotic12m
2
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0010
barcode
806rcbc1
barcode_806R
NCBI
broker name
1508
cd4
2016-08-30
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-12-15T00:00:00
dateart
2009-11-01T00:00:00
datehiv
6.71
duryart
2018-01-16T00:00:00
endfollowup
['2017-08-01T00:00:00', '2017-08-01T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.2611165
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16
host_age
18.368879
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.11036638
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1010
host_subject_id
human respiratory
host_tissue_sampled
AATCAGTCTCGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-16T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:56:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.006137819
templateDNA_16SqPCR
24.71286709
templateDNA_16SqPCR_Cq
8653.298306
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-08-23T00:00:00
visit_date
7
visittotno
1.90309
vllog
80
vload
41
weight
B12
well
-0.90482426
zbmiuk
-2.2754564
zhauk
-2.2744222
zwauk
no
zymo_DNA