MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-10-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108598
External Id
0.792876485
FEV1FVC
-1.342653501
FEV1FVCZ
1.28
FEV1_baseline
81.89047672
FEVpcpred
1.614374995
FVC
-0.769372074
FVCZ
90.2944328
FVCpcpred
12909
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
44598
RawReads_ASVpipeline
SRS10483922
SRA accession
BSP0103
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.66
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0103
barcode
806rcbc37
barcode_806R
NCBI
broker name
949
cd4
2017-06-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-08T00:00:00
dateart
2014-04-28T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.03
duryart
2018-11-05T00:00:00
endfollowup
['2018-05-21T00:00:00', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.4291943
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.6
host_age
17.127468
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.89047672
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1086
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCGAGGACTGCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-05T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:06:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.0156086
templateDNA_16SqPCR
23.62635263
templateDNA_16SqPCR_Cq
22005.52
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-15T00:00:00
visit_date
7
visittotno
1.6812413
vllog
48
vload
30.8
weight
F04
well
0.44248366
zbmiuk
-0.44906044
zhauk
0.079242885
zwauk
no
zymo_DNA