MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-05-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108630
External Id
0.74232687
FEV1FVC
-1.985501749
FEV1FVCZ
1.299999952
FEV1_baseline
43.0729805
FEVpcpred
1.751250029
FVC
-3.973216765
FVCZ
51.17167668
FVCpcpred
7978
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
46400
RawReads_ASVpipeline
SRS10484005
SRA accession
BSP0364
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
9.08
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0364
barcode
806rcbc110
barcode_806R
NCBI
broker name
2018-03-29
collection_date
yes
cotrimoxazole
yes
cough_enrl
2010-06-08T00:00:00
dateart
2008-10-13T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.44
duryart
2018-03-29T00:00:00
endfollowup
['NA', '2017-10-16T00:00:00']
endtreatdate
2016-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-4.147647133
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.8
host_age
15.5278
host_body_mass_index
HIV-associated chronic lung disease
host_disease
43.0729805
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1035
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AATGGAGCATGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:30:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.01138
templateDNA_16SqPCR
24.15
templateDNA_16SqPCR_Cq
16043.9
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-29T00:00:00
visit_date
7
visittotno
40
weight
G01
well
-2.9384894
zbmiuk
-2.0991631
zhauk
-3.5384152
zwauk
no
zymo_DNA