MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-04-21T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248913
External Id
0.804001841
FEV1FVC
-1.153568946
FEV1FVCZ
2.21
FEV1_baseline
71.39527847
FEVpcpred
2.748749971
FVC
-1.771495018
FVCZ
77.99772139
FVCpcpred
20832
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
44295
RawReads_ASVpipeline
SRS10550398
SRA accession
BSP0206
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.9
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0206
barcode
806rcbc84
barcode_806R
NCBI
broker name
779
cd4
2017-10-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-03-15T00:00:00
dateart
2012-02-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.56
duryart
2019-02-20T00:00:00
endfollowup
['2018-09-05T00:00:00', '2018-09-05T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.1835737
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.4
host_age
18.492502
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.39527847
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1135
host_subject_id
human respiratory
host_tissue_sampled
AGGCATCTTACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-20T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.06292693
templateDNA_16SqPCR
21.11250552
templateDNA_16SqPCR_Cq
88716.44889
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-29T00:00:00
visit_date
7
visittotno
2.2528529
vllog
179
vload
47.4
weight
E10
well
-1.3412453
zbmiuk
-2.4570417
zhauk
-2.9480803
zwauk
no
zymo_DNA