MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-11-18T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108622
External Id
0.881982965
FEV1FVC
-0.455572556
FEV1FVCZ
1.49000001
FEV1_baseline
65.60788215
FEVpcpred
1.689375043
FVC
-2.527622928
FVCZ
67.49443479
FVCpcpred
10836
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
42436
RawReads_ASVpipeline
SRS10483989
SRA accession
BSP0320
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
12.3
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0320
barcode
806rcbc373
barcode_806R
NCBI
broker name
2018-02-27
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-03-06T00:00:00
dateart
2012-05-09T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.6
duryart
2018-02-27T00:00:00
endfollowup
['NA', '2017-09-12T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.589834931
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.2
host_age
16.888721
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.60788215
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1021
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CATGTTGGCATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:32:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.647690617
templateDNA_16SqPCR
18.10879204
templateDNA_16SqPCR_Cq
913135.46
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-27T00:00:00
visit_date
7
visittotno
36
weight
E10
well
-1.9400378
zbmiuk
-2.8949354
zhauk
-3.6868865
zwauk
no
zymo_DNA