MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-12-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248982
External Id
0.869040428
FEV1FVC
-0.299493816
FEV1FVCZ
1.799999952
FEV1_baseline
67.53145798
FEVpcpred
2.071249962
FVC
-2.510127573
FVCZ
68.87498642
FVCpcpred
20609
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
42594
RawReads_ASVpipeline
SRS10550432
SRA accession
BSP0597
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
15.13
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0597
barcode
806rcbc322
barcode_806R
NCBI
broker name
390
cd4
2019-01-14
collection_date
no
cotrimoxazole
no
cough_enrl
2014-01-30T00:00:00
dateart
2014-01-15T00:00:00
datehiv
4
duryart
2019-06-17T00:00:00
endfollowup
['NA', '2018-12-20T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.503956357
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20
host_age
17.570904
host_body_mass_index
HIV-associated chronic lung disease
host_disease
67.53145798
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1165
host_subject_id
human respiratory
host_tissue_sampled
CATATCGCAGTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-17T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.114830987
templateDNA_16SqPCR
20.40559628
templateDNA_16SqPCR_Cq
161892.4891
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-14T00:00:00
visit_date
7
visittotno
2.5843313
vllog
384
vload
38.8
weight
B04
well
-2.2970142
zbmiuk
-4.129343
zhauk
-5.5600581
zwauk
no
zymo_DNA