MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-03-24T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250842
External Id
22370
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
39054
RawReads_ASVpipeline
SRS10620564
SRA accession
WRrepeat_BYC115T3
Submitter Id
AAE
WRrepeats
AAE
WRrepeats_WP
Adherent
adherence
no
adm
10.48
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC115T3
barcode
806rcbc148
barcode_806R
NCBI
broker name
2017-08-21
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-09-16T00:00:00
dateart
2016-09-14T00:00:00
datehiv
0.93
duryart
2019-01-07T00:00:00
endfollowup
['not applicable', '2018-07-23T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
11.4
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3037
host_subject_id
human respiratory
host_tissue_sampled
TCAACAGCATCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-07T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
0.009582167
templateDNA_16SqPCR
24.1952611
templateDNA_16SqPCR_Cq
13509.25262
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
7
visittotno
E06
well
no
zymo_DNA