MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246894
External Id
0.877216025
FEV1FVC
-0.031464431
FEV1FVCZ
1.67
FEV1_baseline
80.55857637
FEVpcpred
1.903749943
FVC
-1.566535097
FVCZ
80.66473312
FVCpcpred
15985
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
46512
RawReads_ASVpipeline
SRS10548937
SRA accession
BYC117T3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
12.55
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC117T3
barcode
806rcbc328
barcode_806R
NCBI
broker name
549
cd4
2017-08-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-01-03T00:00:00
dateart
2017-01-03T00:00:00
datehiv
0.65
duryart
2019-01-14T00:00:00
endfollowup
['2017-11-20T00:00:00', '2017-11-20T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.4618492
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.1
host_age
17.760773
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.55857637
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3039
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCAAAGCAAAGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-14T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:55:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.784554694
templateDNA_16SqPCR
17.82646229
templateDNA_16SqPCR_Cq
1106090.92
templateDNA_16SqPCR_copies
human sputum metagenome
title
By Physician
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2017-08-24T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
37.6
weight
H04
well
-0.19559047
zbmiuk
-1.3482053
zhauk
-0.91539347
zwauk
no
zymo_DNA