MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-05-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248926
External Id
0.836121903
FEV1FVC
-0.711899258
FEV1FVCZ
2.28
FEV1_baseline
75.0805504
FEVpcpred
2.726875067
FVC
-1.693862358
FVCZ
78.95188275
FVCpcpred
19302
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
35181
RawReads_ASVpipeline
SRS10550436
SRA accession
BSP0287
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
10.2
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0287
barcode
806rcbc160
barcode_806R
NCBI
broker name
202
cd4
2018-01-31
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-07-18T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.54
duryart
2019-06-19T00:00:00
endfollowup
['2019-01-09T00:00:00', '2019-01-09T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.9140705
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.7
host_age
19.345402
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.0805504
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1167
host_subject_id
human respiratory
host_tissue_sampled
GTCCGAAACACT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-19T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.350010116
templateDNA_16SqPCR
18.72067143
templateDNA_16SqPCR_Cq
493455.7338
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-22T00:00:00
visit_date
7
visittotno
4.7339993
vllog
54200
vload
48.6
weight
A08
well
-0.94544172
zbmiuk
-2.6913342
zhauk
-2.8127182
zwauk
no
zymo_DNA