MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-03-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246727
External Id
0.861491583
FEV1FVC
-0.074716858
FEV1FVCZ
2.829999924
FEV1_baseline
75.36123113
FEVpcpred
3.285000086
FVC
-1.996315893
FVCZ
75.18770422
FVCpcpred
20729
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
59492
RawReads_ASVpipeline
SRS10548266
SRA accession
BSP0722
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.37
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0722
barcode
806rcbc9
barcode_806R
NCBI
broker name
2019-07-23
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-07-15T00:00:00
dateart
2009-07-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.64
duryart
2019-07-23T00:00:00
endfollowup
['NA', '2019-02-04T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.915130629
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.3
host_age
16.049072
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.36123113
host_height
yes
host_hiv_stat
male
host_sex
B1187
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTATGCGCTGTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.09287
templateDNA_16SqPCR
21.05
templateDNA_16SqPCR_Cq
130931.17
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-07-23T00:00:00
visit_date
7
visittotno
48.2
weight
B01
well
-3.5156672
zbmiuk
-0.59303319
zhauk
-3.2777259
zwauk
no
zymo_DNA