MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-08-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248096
External Id
25171
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
49979
RawReads_ASVpipeline
SRS10620714
SRA accession
BSP0308
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
10.11
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0308
barcode
806rcbc326
barcode_806R
NCBI
broker name
457
cd4
2018-02-15
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-09-12T00:00:00
dateart
2007-08-31T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.37
duryart
2018-06-14T00:00:00
endfollowup
['NA', '2018-01-26T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.5
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
male
host_sex
B1047
host_subject_id
human respiratory
host_tissue_sampled
TGCTGCTTAACA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.001092044
templateDNA_16SqPCR
27.25168468
templateDNA_16SqPCR_Cq
1539.600099
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-10T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
F04
well
no
zymo_DNA