MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-12-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250752
External Id
0.945796125
FEV1FVC
0.910583362
FEV1FVCZ
1.45
FEV1_baseline
85.95294618
FEVpcpred
1.533100009
FVC
-1.449197741
FVCZ
81.71134885
FVCpcpred
23481
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
43513
RawReads_ASVpipeline
SRS10620484
SRA accession
BSP0120
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
2.46
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0120
barcode
806rcbc56
barcode_806R
NCBI
broker name
626
cd4
2017-07-17
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-06-15T00:00:00
dateart
2004-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.09
duryart
2018-12-03T00:00:00
endfollowup
['2018-06-21T00:00:00', '2018-06-21T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.0783169
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.5
host_age
14.041059
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.95294618
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1095
host_subject_id
human respiratory
host_tissue_sampled
AGTAGAGGGATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-03T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:19:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.074927129
templateDNA_16SqPCR
21.44060313
templateDNA_16SqPCR_Cq
105634.7218
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-12T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
26.2
weight
A07
well
-2.1784673
zbmiuk
-1.5006456
zhauk
-2.1918588
zwauk
no
zymo_DNA