MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-02-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248902
External Id
0.916927593
FEV1FVC
0.628063404
FEV1FVCZ
2.38
FEV1_baseline
74.63549264
FEVpcpred
2.595624924
FVC
-2.312125885
FVCZ
71.39117112
FVCpcpred
8209
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
28096
RawReads_ASVpipeline
SRS10550321
SRA accession
BSP0140
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.33
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0140
barcode
806rcbc64
barcode_806R
NCBI
broker name
911
cd4
2017-08-09
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-06-06T00:00:00
dateart
2004-09-16T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.18
duryart
2018-12-20T00:00:00
endfollowup
['2018-07-11T00:00:00', '2018-07-11T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.8899595
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.5
host_age
17.911217
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.63549264
host_height
yes
host_hiv_stat
male
host_sex
B1104
host_subject_id
human respiratory
host_tissue_sampled
GAGTGGTAGAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-20T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:58:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.040258652
templateDNA_16SqPCR
21.76141657
templateDNA_16SqPCR_Cq
56757.96774
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-03T00:00:00
visit_date
7
visittotno
2.690196
vllog
490
vload
49
weight
A08
well
-1.1487072
zbmiuk
-1.2818146
zhauk
-1.6780249
zwauk
no
zymo_DNA