MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108597
External Id
0.846016452
FEV1FVC
-0.679911671
FEV1FVCZ
1.48
FEV1_baseline
84.40674189
FEVpcpred
1.749374986
FVC
-0.917373494
FVCZ
88.65355552
FVCpcpred
10336
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
50471
RawReads_ASVpipeline
SRS10483919
SRA accession
BSP0102
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
5.43
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0102
barcode
806rcbc156
barcode_806R
NCBI
broker name
498
cd4
2017-06-16
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-11-15T00:00:00
dateart
2009-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.58
duryart
2018-11-02T00:00:00
endfollowup
['2018-05-21T00:00:00', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.1802706
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13
host_age
18.653439
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.40674189
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1085
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CAACACGCACGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:56:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.005495386
templateDNA_16SqPCR
25.26345657
templateDNA_16SqPCR_Cq
7747.58
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-09T00:00:00
visit_date
7
visittotno
1.770852
vllog
59
vload
34.4
weight
E07
well
0.27768618
zbmiuk
-2.4259641
zhauk
-1.3170944
zwauk
no
zymo_DNA