MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-11-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108656
External Id
0.90097088
FEV1FVC
0.159692727
FEV1FVCZ
2.029999971
FEV1_baseline
80.72764628
FEVpcpred
2.253124952
FVC
-1.54561687
FVCZ
79.60264328
FVCpcpred
12947
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
33032
RawReads_ASVpipeline
SRS10483916
SRA accession
BSP0549
Submitter Id
AG
WRrepeats
AG
WRrepeats_WP
no
acut_exac12m
Not Adherent
adherence
no
adm
16.48
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0549
barcode
806rcbc239
barcode_806R
NCBI
broker name
2018-10-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-30T00:00:00
dateart
2009-08-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.12
duryart
2018-10-29T00:00:00
endfollowup
['NA', '2018-05-14T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.46624871
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.9
host_age
17.731833
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.72764628
host_height
yes
host_hiv_stat
female
host_sex
B1082
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTAAGTCGTGGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:03:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.525407735
templateDNA_16SqPCR
18.33542702
templateDNA_16SqPCR_Cq
740737.05
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-10-29T00:00:00
visit_date
7
visittotno
41.4
weight
G05
well
-1.9397188
zbmiuk
-1.7983322
zhauk
-2.6742487
zwauk
no
zymo_DNA