MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-01-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250787
External Id
0.8650083
FEV1FVC
-0.103370472
FEV1FVCZ
1.629999995
FEV1_baseline
80.42602001
FEVpcpred
1.884374976
FVC
-1.55993461
FVCZ
80.75424286
FVCpcpred
14380
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
26138
RawReads_ASVpipeline
SRS10620470
SRA accession
BSP0394
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Abnormal Sat
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.87
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0394
barcode
806rcbc177
barcode_806R
NCBI
broker name
563
cd4
2018-05-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-12-08T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.49
duryart
2018-10-23T00:00:00
endfollowup
['NA', '2018-05-08T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.504870754
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.2
host_age
13.939944
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.42602001
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1081
host_subject_id
human respiratory
host_tissue_sampled
CTACCGGATCAA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:21:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.100133455
templateDNA_16SqPCR
20.82613983
templateDNA_16SqPCR_Cq
141171.4262
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-08T00:00:00
visit_date
7
visittotno
2.7395723
vllog
549
vload
30
weight
B10
well
-2.5072086
zbmiuk
-0.45223802
zhauk
-1.6961641
zwauk
no
zymo_DNA