MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-03-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246663
External Id
0.857653296
FEV1FVC
-0.706101001
FEV1FVCZ
1.799999952
FEV1_baseline
77.61405029
FEVpcpred
2.098750114
FVC
-1.417693338
FVCZ
81.33755756
FVCpcpred
12528
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
35170
RawReads_ASVpipeline
SRS10548199
SRA accession
BSP0486
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0486
barcode
806rcbc253
barcode_806R
NCBI
broker name
660
cd4
2018-08-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-07-15T00:00:00
dateart
2010-05-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.14
duryart
2019-01-22T00:00:00
endfollowup
['NA', '2018-08-06T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.702002249
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.4
host_age
21.935305
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.61405029
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1108
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACCGGCTAGAGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
12:24:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
1.061235708
templateDNA_16SqPCR
17.28479263
templateDNA_16SqPCR_Cq
1496164.88
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-10T00:00:00
visit_date
7
visittotno
1.9294189
vllog
85
vload
47.4
weight
E07
well
0.12334207
zbmiuk
-2.7536366
zhauk
-1.5209541
zwauk
no
zymo_DNA