MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-11-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108588
External Id
0.968980838
FEV1FVC
1.789631323
FEV1FVCZ
2.46
FEV1_baseline
65.9442836
FEVpcpred
2.538749933
FVC
-3.340244056
FVCZ
58.85350096
FVCpcpred
10866
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
33179
RawReads_ASVpipeline
SRS10483893
SRA accession
BSP0070
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.93
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0070
barcode
806rcbc298
barcode_806R
NCBI
broker name
694
cd4
2017-04-06
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-10-24T00:00:00
dateart
2009-06-15T00:00:00
datehiv
5.45
duryart
2018-08-23T00:00:00
endfollowup
['2018-03-08T00:00:00', '2018-03-08T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.516619
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.3
host_age
14.455246
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.9442836
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1063
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AACGCCGAATGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2.3', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.487
templateDNA_16SqPCR
18.6
templateDNA_16SqPCR_Cq
686588.56
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-03-30T00:00:00
visit_date
7
visittotno
4.1271048
vllog
13400
vload
45.8
weight
B01
well
-3.7382555
zbmiuk
0.46394399
zhauk
-2.0849261
zwauk
no
zymo_DNA