MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-09-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246649
External Id
1
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
8
RawReads_ASVpipeline
SRS10548224
SRA accession
BSP0444
Submitter Id
Adherent
adherence
no
adm
6.36
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0444
barcode
806rcbc27
barcode_806R
NCBI
broker name
2018-07-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-01-15T00:00:00
dateart
2011-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.55
duryart
2018-12-13T00:00:00
endfollowup
['not applicable', '2018-07-05T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
12.8
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1101
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACGCGCAGATAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-13T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.0662
templateDNA_16SqPCR
21.52980315
templateDNA_16SqPCR_Cq
93361.45
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
7
visittotno
D03
well
no
zymo_DNA