MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-02-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108629
External Id
0.906735776
FEV1FVC
0.265137118
FEV1FVCZ
1.75
FEV1_baseline
69.89683408
FEVpcpred
1.929999948
FVC
-2.417284897
FVCZ
68.47405033
FVCpcpred
12672
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
31665
RawReads_ASVpipeline
SRS10484003
SRA accession
BSP0351
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
9.4
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0351
barcode
806rcbc287
barcode_806R
NCBI
broker name
2018-03-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-07-11T00:00:00
dateart
2006-05-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.31
duryart
2018-03-19T00:00:00
endfollowup
['NA', '2017-10-02T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.267208812
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
21
host_age
20.467617
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.89683408
host_height
yes
host_hiv_stat
female
host_sex
B1032
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACGTAGCATTTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-19T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:45:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.779954921
templateDNA_16SqPCR
17.74501939
templateDNA_16SqPCR_Cq
1099606.01
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-19T00:00:00
visit_date
7
visittotno
5.6981006
vllog
499000
vload
47.6
weight
G11
well
-0.59478968
zbmiuk
-1.8484672
zhauk
-1.5098605
zwauk
no
zymo_DNA