MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-07-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108698
External Id
12172
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
34849
RawReads_ASVpipeline
SRS10483955
SRA accession
WRrepeat_BSP0582
Submitter Id
AM
WRrepeats
AM
WRrepeats_WP
Adherent
adherence
no
adm
16.18
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0582
barcode
806rcbc341
barcode_806R
NCBI
broker name
2019-01-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-09-12T00:00:00
dateart
2014-08-19T00:00:00
datehiv
2.9
duryart
2019-01-08T00:00:00
endfollowup
['not applicable', '2018-07-09T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
20.5
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
male
host_sex
B1102
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACCTGGGCATTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
yes
tbtreat
0.208961384
templateDNA_16SqPCR
19.77485435
templateDNA_16SqPCR_Cq
294600.61
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
7
visittotno
E06
well
no
zymo_DNA