MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-06-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246642
External Id
0.794110618
FEV1FVC
-1.38704446
FEV1FVCZ
2.09
FEV1_baseline
83.28900907
FEVpcpred
2.631875038
FVC
-0.561753772
FVCZ
93.01930112
FVCpcpred
13480
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
42067
RawReads_ASVpipeline
SRS10548149
SRA accession
BSP0425
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
13.37
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0425
barcode
806rcbc274
barcode_806R
NCBI
broker name
661
cd4
2018-06-21
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-10-17T00:00:00
dateart
2010-09-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
1.68
duryart
2019-05-28T00:00:00
endfollowup
['2019-05-28T00:00:00', '2019-05-28T00:00:00']
endtreatdate
2018-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.2368666
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15
host_age
17.308369
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.28900907
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1208
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CACACAGCGTTA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:45:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.016904899
templateDNA_16SqPCR
23.47127975
templateDNA_16SqPCR_Cq
23833.08
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-06-19T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
40.2
weight
B10
well
-1.0411141
zbmiuk
-2.0706444
zhauk
-1.8992068
zwauk
no
zymo_DNA