MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-01-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248903
External Id
0.825082516
FEV1FVC
-1.328271187
FEV1FVCZ
1.25
FEV1_baseline
70.78678395
FEVpcpred
1.514999986
FVC
-1.745634436
FVCZ
77.90828526
FVCpcpred
14937
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
37778
RawReads_ASVpipeline
SRS10550354
SRA accession
BSP0152
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
9.32
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0152
barcode
806rcbc316
barcode_806R
NCBI
broker name
402
cd4
2017-08-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-28T00:00:00
dateart
2007-12-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.33
duryart
2019-01-14T00:00:00
endfollowup
['2018-08-06T00:00:00', '2018-08-06T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.2111759
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.6
host_age
17.174522
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.78678395
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1106
host_subject_id
human respiratory
host_tissue_sampled
TGATCAGAAGAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:07:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.108000858
templateDNA_16SqPCR
20.49577371
templateDNA_16SqPCR_Cq
152263.1498
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-24T00:00:00
visit_date
7
visittotno
1.9542425
vllog
90
vload
32
weight
D03
well
-0.62464452
zbmiuk
-2.4079578
zhauk
-1.7953833
zwauk
no
zymo_DNA