MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-07-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246612
External Id
0.865657938
FEV1FVC
-0.268512453
FEV1FVCZ
1.18
FEV1_baseline
58.3726739
FEVpcpred
1.363124967
FVC
-3.308882237
FVCZ
59.43929225
FVCpcpred
9529
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
42940
RawReads_ASVpipeline
SRS10548232
SRA accession
BSP0234
Submitter Id
J
WRrepeats
J
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
5.06
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0234
barcode
806rcbc198
barcode_806R
NCBI
broker name
477
cd4
2017-11-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-08-15T00:00:00
dateart
2008-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.23
duryart
2019-03-26T00:00:00
endfollowup
['2018-10-09T00:00:00', '2018-10-09T00:00:00']
endtreatdate
2017-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-3.0783138
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.2
host_age
16.538965
host_body_mass_index
HIV-associated chronic lung disease
host_disease
58.3726739
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1150
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGTAACAGCTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.047497926
templateDNA_16SqPCR
22.02703393
templateDNA_16SqPCR_Cq
66964.13
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-10-31T00:00:00
visit_date
7
visittotno
2.089905
vllog
123
vload
34.2
weight
G12
well
-0.90464282
zbmiuk
-1.6396701
zhauk
-1.5678838
zwauk
no
zymo_DNA