MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-11-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248990
External Id
0.903363921
FEV1FVC
0.277102619
FEV1FVCZ
0.923125029
FEV1_baseline
70.30049699
FEVpcpred
1.021875024
FVC
-2.482575602
FVCZ
69.12193395
FVCpcpred
17028
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
36123
RawReads_ASVpipeline
SRS10550387
SRA accession
BSP0630
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
0.86
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0630
barcode
806rcbc283
barcode_806R
NCBI
broker name
2019-02-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-10-08T00:00:00
dateart
2009-04-02T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.97
duryart
2019-02-12T00:00:00
endfollowup
['NA', '2018-08-28T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.347871362
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
10.2
host_age
13.484358
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.30049699
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1129
host_subject_id
human respiratory
host_tissue_sampled
CATCCAAATGCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:20:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.106064199
templateDNA_16SqPCR
20.34158008
templateDNA_16SqPCR_Cq
149532.7842
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-02-12T00:00:00
visit_date
7
visittotno
20.6
weight
C11
well
-2.2411084
zbmiuk
-2.5267723
zhauk
-3.4257689
zwauk
no
zymo_DNA