MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-08-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246615
External Id
0.882543836
FEV1FVC
-0.278321677
FEV1FVCZ
0.85
FEV1_baseline
75.51929539
FEVpcpred
0.96312499
FVC
-1.822080658
FVCZ
76.98378048
FVCpcpred
8691
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
33701
RawReads_ASVpipeline
SRS10548243
SRA accession
BSP0271
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.73
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0271
barcode
806rcbc57
barcode_806R
NCBI
broker name
695
cd4
2018-01-16
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-05-15T00:00:00
dateart
2009-02-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
1.67
duryart
2019-06-04T00:00:00
endfollowup
['2018-12-18T00:00:00', '2018-12-18T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.9115589
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.4
host_age
14.515895
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.51929539
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1158
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGCAGCGGTATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:31:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.0194
templateDNA_16SqPCR
23.30813637
templateDNA_16SqPCR_Cq
27402.79
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-12T00:00:00
visit_date
7
visittotno
3.1673174
vllog
1470
vload
19.6
weight
B07
well
-1.1356685
zbmiuk
-3.2237289
zhauk
-3.2715919
zwauk
no
zymo_DNA