MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-05-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249016
External Id
0.829983697
FEV1FVC
-1.125309393
FEV1FVCZ
1.909999967
FEV1_baseline
74.79815236
FEVpcpred
2.301249981
FVC
-1.458281555
FVCZ
80.90756525
FVCpcpred
22204
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
47436
RawReads_ASVpipeline
SRS10550447
SRA accession
BSP0703
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.45
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0703
barcode
806rcbc325
barcode_806R
NCBI
broker name
2019-06-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-11-10T00:00:00
dateart
2013-11-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.24
duryart
2019-06-24T00:00:00
endfollowup
['NA', '2019-01-07T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.913740092
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18
host_age
25.721033
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.79815236
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1174
host_subject_id
human respiratory
host_tissue_sampled
CGGCGATGTACA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-24T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.011362702
templateDNA_16SqPCR
23.80719349
templateDNA_16SqPCR_Cq
16019.5102
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-06-24T00:00:00
visit_date
7
visittotno
61
weight
E04
well
1.3633509
zbmiuk
-1.584736
zhauk
0.40059641
zwauk
no
zymo_DNA