MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-05-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250826
External Id
16475
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
31249
RawReads_ASVpipeline
SRS10620569
SRA accession
WRrepeat_BSP0132
Submitter Id
G
WRrepeats
G
WRrepeats_WP
no
adm
5.07
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0132
barcode
806rcbc31
barcode_806R
NCBI
broker name
2017-08-03
collection_date
yes
cotrimoxazole
2008-06-15T00:00:00
dateart
2008-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.13
duryart
['not applicable', 'not applicable']
endtreatdate
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
comparison group
group
Homo sapiens
host
14.1
host_age
No HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
C111
host_subject_id
human respiratory
host_tissue_sampled
TAGCTCGTAACT
index_sequence
sputum
isolation_source
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
no
tbtreat
0.127948444
templateDNA_16SqPCR
20.66909669
templateDNA_16SqPCR_Cq
180385.9107
templateDNA_16SqPCR_copies
human sputum metagenome
title
Week 0
visit
H03
well
no
zymo_DNA