MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-04-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248948
External Id
0.952300505
FEV1FVC
1.309775589
FEV1FVCZ
1.41
FEV1_baseline
68.36614866
FEVpcpred
1.480625033
FVC
-2.99666903
FVCZ
63.21451404
FVCpcpred
13018
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
35612
RawReads_ASVpipeline
SRS10550335
SRA accession
BSP0471
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.97
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0471
barcode
806rcbc164
barcode_806R
NCBI
broker name
395
cd4
2018-08-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-03-20T00:00:00
dateart
2011-12-13T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.37
duryart
2019-07-04T00:00:00
endfollowup
['2019-07-04T00:00:00', '2019-07-04T00:00:00']
endtreatdate
2018-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.353857
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.3
host_age
15.145735
host_body_mass_index
HIV-associated chronic lung disease
host_disease
68.36614866
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1230
host_subject_id
human respiratory
host_tissue_sampled
CAGGAAGGTTAA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-07-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:21:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.029605541
templateDNA_16SqPCR
22.31884902
templateDNA_16SqPCR_Cq
41738.86166
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-07-26T00:00:00
visit_date
5
visittotno
3.2121875
vllog
1630
vload
31.8
weight
E08
well
-1.8864973
zbmiuk
-1.5400205
zhauk
-2.0662324
zwauk
no
zymo_DNA