MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-10-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108648
External Id
0.837638358
FEV1FVC
-0.906055267
FEV1FVCZ
2.269999981
FEV1_baseline
79.5842938
FEVpcpred
2.710000038
FVC
-1.182784297
FVCZ
84.41290311
FVCpcpred
8442
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
28527
RawReads_ASVpipeline
SRS10483891
SRA accession
BSP0484
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.63
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0484
barcode
806rcbc211
barcode_806R
NCBI
broker name
2018-08-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-05-20T00:00:00
dateart
2001-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.84
duryart
2018-08-10T00:00:00
endfollowup
['NA', '2018-02-23T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.55595537
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.8
host_age
25.422043
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.5842938
host_height
yes
host_hiv_stat
female
host_sex
B1060
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTATCACGTGCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-10T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:26:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.7755
templateDNA_16SqPCR
17.91
templateDNA_16SqPCR_Cq
1093325.32
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-10T00:00:00
visit_date
7
visittotno
5.2430382
vllog
175000
vload
66.8
weight
C02
well
1.2254837
zbmiuk
-0.25342464
zhauk
0.97214663
zwauk
no
zymo_DNA