MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-09-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248920
External Id
0.894259871
FEV1FVC
-0.030502642
FEV1FVCZ
1.85
FEV1_baseline
76.75956549
FEVpcpred
2.068749905
FVC
-1.850018961
FVCZ
77.07536607
FVCpcpred
14057
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
28117
RawReads_ASVpipeline
SRS10550415
SRA accession
BSP0241
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.09
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0241
barcode
806rcbc362
barcode_806R
NCBI
broker name
1338
cd4
2017-11-30
collection_date
no
cotrimoxazole
no
cough_enrl
2007-10-15T00:00:00
dateart
2007-09-15T00:00:00
datehiv
10.13
duryart
2019-04-29T00:00:00
endfollowup
['2018-11-01T00:00:00', '2018-11-01T00:00:00']
endtreatdate
2017-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.7284075
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.2
host_age
16.236675
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.75956549
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1154
host_subject_id
human respiratory
host_tissue_sampled
GTCCAGTAATGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:02:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.211006863
templateDNA_16SqPCR
19.51085977
templateDNA_16SqPCR_Cq
297484.3909
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-27T00:00:00
visit_date
7
visittotno
3.1760912
vllog
1500
vload
34.8
weight
B09
well
-2.1504185
zbmiuk
-3.6916344
zhauk
-4.0024762
zwauk
no
zymo_DNA