MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-06-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250785
External Id
0.781042618
FEV1FVC
-1.613550446
FEV1FVCZ
2.0599999430000002
FEV1_baseline
80.00267221
FEVpcpred
2.637500048
FVC
-0.681414598
FVCZ
90.90978567
FVCpcpred
13777
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
26709
RawReads_ASVpipeline
SRS10620468
SRA accession
BSP0378
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
14.73
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0378
barcode
806rcbc93
barcode_806R
NCBI
broker name
818
cd4
2018-04-13
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-03-06T00:00:00
dateart
2012-03-03T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.18
duryart
2018-07-06T00:00:00
endfollowup
['NA', '2018-04-13T00:00:00']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.520749453
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.8
host_age
21.952011
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.00267221
host_height
yes
host_hiv_stat
female
host_sex
B1071
host_subject_id
human respiratory
host_tissue_sampled
CCACCTACTCCA
index_sequence
sputum
isolation_source
15 mths
lastvisit
2018-07-06T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:23:00
sp05time
LTFU
study_complt_stat
no
tbtreat
0.015463175
templateDNA_16SqPCR
23.71579169
templateDNA_16SqPCR_Cq
21800.49135
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2018-04-13T00:00:00
visit_date
6
visittotno
1.5910646
vllog
39
vload
52.4
weight
F11
well
0.010115323
zbmiuk
-1.5156404
zhauk
-0.76303715
zwauk
no
zymo_DNA