MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-12-25T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249028
External Id
0.784057482
FEV1FVC
-1.689770873
FEV1FVCZ
1.5
FEV1_baseline
74.23531242
FEVpcpred
1.913125038
FVC
-1.157349898
FVCZ
85.64570701
FVCpcpred
20373
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
38681
RawReads_ASVpipeline
SRS10550345
SRA accession
BYC10CT3
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
12.74
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYC10CT3
barcode
806rcbc346
barcode_806R
NCBI
broker name
439
cd4
2017-02-13
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-09-22T00:00:00
dateart
2014-06-15T00:00:00
datehiv
2.4
duryart
2018-05-02T00:00:00
endfollowup
['2018-01-17T00:00:00', '2018-01-17T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.8957129
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.1
host_age
14.702793
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.23531242
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3012
host_subject_id
human respiratory
host_tissue_sampled
TCGAATCACAGC
index_sequence
sputum
isolation_source
15 mths
lastvisit
2018-05-02T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
0
nadm
yes
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
LTFU
study_complt_stat
yes
tbtreat
0.050296658
templateDNA_16SqPCR
21.61957904
templateDNA_16SqPCR_Cq
70909.87718
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
no
visit012
no
visit018
no
visit1218
2017-02-06T00:00:00
visit_date
6
visittotno
3.2278867
vllog
1690
vload
28
weight
B07
well
-2.9951591
zbmiuk
-3.9291799
zhauk
-4.3095217
zwauk
no
zymo_DNA