MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248056
External Id
0.839071236
FEV1FVC
-0.993146598
FEV1FVCZ
1.31
FEV1_baseline
70.22537754
FEVpcpred
1.561249971
FVC
-2.002685421
FVCZ
74.88489622
FVCpcpred
10877
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
23646
RawReads_ASVpipeline
SRS10620612
SRA accession
BSP0054
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0054
barcode
806rcbc104
barcode_806R
NCBI
broker name
1665
cd4
2017-02-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-10-01T00:00:00
dateart
2012-09-01T00:00:00
datehiv
4.36
duryart
2018-06-27T00:00:00
endfollowup
['2018-01-10T00:00:00', '2018-01-10T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.2533951
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.7
host_age
15.027041
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.22537754
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1051
host_subject_id
human respiratory
host_tissue_sampled
GCTTCGGTAGAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:31:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.068437014
templateDNA_16SqPCR
21.1
templateDNA_16SqPCR_Cq
96484.74579
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-02T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
30.6
weight
A01
well
-1.5434457
zbmiuk
-0.76612699
zhauk
-1.3530406
zwauk
no
zymo_DNA