MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-12-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250734
External Id
0.872296312
FEV1FVC
-0.506118655
FEV1FVCZ
1.84
FEV1_baseline
72.58282275
FEVpcpred
2.109375
FVC
-1.939088543
FVCZ
74.79612642
FVCpcpred
25911
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
39660
RawReads_ASVpipeline
SRS10620446
SRA accession
BSP0038
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.7
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0038
barcode
806rcbc234
barcode_806R
NCBI
broker name
384
cd4
2016-11-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-08-15T00:00:00
dateart
2005-01-01T00:00:00
datehiv
11.29
duryart
2018-04-17T00:00:00
endfollowup
['2017-10-31T00:00:00', '2017-10-31T00:00:00']
endtreatdate
2016-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.0779636
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.9
host_age
17.745846
host_body_mass_index
HIV-associated chronic lung disease
host_disease
72.58282275
host_height
yes
host_hiv_stat
female
host_sex
B1036
host_subject_id
human respiratory
host_tissue_sampled
GTCATTCACGAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-04-17T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:37:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.164981682
templateDNA_16SqPCR
20.02016914
templateDNA_16SqPCR_Cq
232596.5828
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-11-23T00:00:00
visit_date
7
visittotno
2.3344538
vllog
216
vload
41
weight
B05
well
-1.5634799
zbmiuk
-1.9142948
zhauk
-2.6389334
zwauk
no
zymo_DNA