MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-07-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246662
External Id
0.912959358
FEV1FVC
0.3288692
FEV1FVCZ
1.769999981
FEV1_baseline
63.52522073
FEVpcpred
1.938750029
FVC
-2.963973533
FVCZ
61.86325241
FVCpcpred
15149
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
44575
RawReads_ASVpipeline
SRS10548210
SRA accession
BSP0481
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.18
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0481
barcode
806rcbc333
barcode_806R
NCBI
broker name
764
cd4
2018-08-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-09-15T00:00:00
dateart
2007-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.98
duryart
2019-01-24T00:00:00
endfollowup
['NA', '2018-08-08T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.737184538
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19
host_age
21.715366
host_body_mass_index
HIV-associated chronic lung disease
host_disease
63.52522073
host_height
yes
host_hiv_stat
female
host_sex
B1113
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGGATTACTCCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-24T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:06:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.017302718
templateDNA_16SqPCR
23.44388181
templateDNA_16SqPCR_Cq
24393.94
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-08T00:00:00
visit_date
7
visittotno
1.8325089
vllog
68
vload
55.8
weight
E05
well
0.077890322
zbmiuk
-0.55136329
zhauk
-0.26935565
zwauk
no
zymo_DNA