MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-05-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248057
External Id
0.879293406
FEV1FVC
-0.202396141
FEV1FVCZ
1.68
FEV1_baseline
63.73855646
FEVpcpred
1.910624981
FVC
-2.860195826
FVCZ
64.67902834
FVCpcpred
14689
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
28779
RawReads_ASVpipeline
SRS10620614
SRA accession
BSP0055
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
9.63
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0055
barcode
806rcbc210
barcode_806R
NCBI
broker name
620
cd4
2017-02-16
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-01-05T00:00:00
dateart
2007-06-15T00:00:00
datehiv
7.12
duryart
2018-07-05T00:00:00
endfollowup
['2018-01-18T00:00:00', '2018-01-18T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.6880238
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.7
host_age
18.133074
host_body_mass_index
HIV-associated chronic lung disease
host_disease
63.73855646
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1052
host_subject_id
human respiratory
host_tissue_sampled
CTCCTGAAAGTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-05T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:01:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.111790759
templateDNA_16SqPCR
20.38
templateDNA_16SqPCR_Cq
157606.2755
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-14T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
41.4
weight
B02
well
-1.0930898
zbmiuk
-3.336257
zhauk
-3.1398096
zwauk
no
zymo_DNA