MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248943
External Id
0.90717308
FEV1FVC
0.144306572
FEV1FVCZ
2.15
FEV1_baseline
86.84337056
FEVpcpred
2.369999886
FVC
-1.082150917
FVCZ
85.69676113
FVCpcpred
10295
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
21249
RawReads_ASVpipeline
SRS10550326
SRA accession
BSP0441
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
6.98
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0441
barcode
806rcbc109
barcode_806R
NCBI
broker name
12
cd4
2018-07-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-02-16T00:00:00
dateart
2006-02-12T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
12.38
duryart
2019-06-05T00:00:00
endfollowup
['2019-06-05T00:00:00', '2019-06-05T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.0084814
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.3
host_age
22.625853
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.84337056
host_height
yes
host_hiv_stat
female
host_sex
B1216
host_subject_id
human respiratory
host_tissue_sampled
TGTAATTGTCGC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-05T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:52:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.006119278
templateDNA_16SqPCR
24.58
templateDNA_16SqPCR_Cq
8627.15814
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-06-28T00:00:00
visit_date
5
visittotno
0
vllog
0
vload
52
weight
F01
well
0.36769667
zbmiuk
-1.991834
zhauk
-0.79938459
zwauk
no
zymo_DNA