MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-01-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246917
External Id
0.601880909
FEV1FVC
-3.379101543
FEV1FVCZ
1.2
FEV1_baseline
54.73657529
FEVpcpred
1.993749976
FVC
-1.376620406
FVCZ
82.35080128
FVCpcpred
13613
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
45965
RawReads_ASVpipeline
SRS10548928
SRA accession
BYD104T3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.24
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD104T3
barcode
806rcbc97
barcode_806R
NCBI
broker name
591
cd4
2017-11-15
collection_date
yes
cotrimoxazole
yes
cough_enrl
2012-04-04T00:00:00
dateart
2012-06-15T00:00:00
datehiv
4.71
duryart
2018-05-07T00:00:00
endfollowup
['NA', '2017-11-15T00:00:00']
endtreatdate
2016-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-3.3694653
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.8
host_age
16.75493
host_body_mass_index
HIV-associated chronic lung disease
host_disease
54.73657529
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3006
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGTTATCGCACA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-07T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
14:15:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.072608026
templateDNA_16SqPCR
21.39623878
templateDNA_16SqPCR_Cq
102365.17
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-15T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
36.7
weight
B12
well
-1.203795
zbmiuk
-1.6776509
zhauk
-1.9009607
zwauk
no
zymo_DNA