MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-11-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250800
External Id
0.858321841
FEV1FVC
-0.23427653
FEV1FVCZ
1.559999943
FEV1_baseline
81.72350323
FEVpcpred
1.817499995
FVC
-1.392615875
FVCZ
82.80213438
FVCpcpred
15862
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
29973
RawReads_ASVpipeline
SRS10620481
SRA accession
BSP0561
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
4.01
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0561
barcode
806rcbc114
barcode_806R
NCBI
broker name
2018-11-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-11-25T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.58
duryart
2018-11-12T00:00:00
endfollowup
['NA', '2018-05-28T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.418041136
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.9
host_age
16.802439
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.72350323
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1089
host_subject_id
human respiratory
host_tissue_sampled
AGCCTAAGCACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:39:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.006506119
templateDNA_16SqPCR
24.83902342
templateDNA_16SqPCR_Cq
9172.540444
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-11-12T00:00:00
visit_date
7
visittotno
34.6
weight
C02
well
-0.32260704
zbmiuk
-0.65445518
zhauk
-0.5521096
zwauk
no
zymo_DNA