MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-02-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249039
External Id
0.889844112
FEV1FVC
-0.31181672
FEV1FVCZ
2.07
FEV1_baseline
91.79322103
FEVpcpred
2.326250076
FVC
-0.499419944
FVCZ
93.50833619
FVCpcpred
17215
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
36586
RawReads_ASVpipeline
SRS10550359
SRA accession
BYD10MT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
12.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD10MT3
barcode
806rcbc28
barcode_806R
NCBI
broker name
865
cd4
2018-05-21
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-10-10T00:00:00
dateart
2016-10-10T00:00:00
datehiv
0.69
duryart
2018-11-05T00:00:00
endfollowup
['NA', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.63265581
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.2
host_age
20.089186
host_body_mass_index
HIV-associated chronic lung disease
host_disease
91.79322103
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3024
host_subject_id
human respiratory
host_tissue_sampled
GACTTTCCCTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-05T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['3', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.014091517
templateDNA_16SqPCR
23.29783636
templateDNA_16SqPCR_Cq
19866.68236
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-21T00:00:00
visit_date
7
visittotno
44.6
weight
E03
well
0.20066351
zbmiuk
-1.7972354
zhauk
-0.89526719
zwauk
no
zymo_DNA