MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-10-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248058
External Id
0.811871689
FEV1FVC
-1.485776014
FEV1FVCZ
1.06
FEV1_baseline
60.49464692
FEVpcpred
1.305624962
FVC
-2.603687853
FVCZ
67.48366115
FVCpcpred
14068
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
30835
RawReads_ASVpipeline
SRS10620618
SRA accession
BSP0058
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.96
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0058
barcode
806rcbc108
barcode_806R
NCBI
broker name
349
cd4
2017-02-21
collection_date
yes
cotrimoxazole
yes
cough_enrl
2011-09-21T00:00:00
dateart
2011-03-02T00:00:00
datehiv
5.42
duryart
2018-07-10T00:00:00
endfollowup
['2018-01-23T00:00:00', '2018-01-23T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.9599695
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.3
host_age
15.264747
host_body_mass_index
HIV-associated chronic lung disease
host_disease
60.49464692
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1055
host_subject_id
human respiratory
host_tissue_sampled
TATCAGGTGTGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-10T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:25:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.017095942
templateDNA_16SqPCR
23.1
templateDNA_16SqPCR_Cq
24102.41964
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-16T00:00:00
visit_date
7
visittotno
2.1613679
vllog
145
vload
28.4
weight
E01
well
-1.6189504
zbmiuk
-2.1897044
zhauk
-2.3054976
zwauk
no
zymo_DNA