MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248978
External Id
0.773286447
FEV1FVC
-1.542428635
FEV1FVCZ
2.75
FEV1_baseline
89.76615688
FEVpcpred
3.556250095
FVC
0.146390612
FVCZ
101.8314832
FVCpcpred
9985
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
28713
RawReads_ASVpipeline
SRS10550449
SRA accession
BSP0591
Submitter Id
AN
WRrepeats
AN
WRrepeats_BP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
9.35
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0591
barcode
806rcbc119
barcode_806R
NCBI
broker name
366
cd4
2019-01-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-01-15T00:00:00
dateart
2008-10-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.07
duryart
2019-06-27T00:00:00
endfollowup
['NA', '2019-01-10T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.79987962
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.3
host_age
21.626814
host_body_mass_index
HIV-associated chronic lung disease
host_disease
89.76615688
host_height
yes
host_hiv_stat
male
host_sex
B1176
host_subject_id
human respiratory
host_tissue_sampled
GACTCTTGGCAA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:45:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.121700475
templateDNA_16SqPCR
20.26
templateDNA_16SqPCR_Cq
171577.3192
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-10T00:00:00
visit_date
7
visittotno
3.1139433
vllog
1300
vload
54.4
weight
H02
well
-0.026746895
zbmiuk
-2.6810186
zhauk
-1.9329093
zwauk
no
zymo_DNA