MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-11-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108610
External Id
0.665714873
FEV1FVC
-2.813891753
FEV1FVCZ
2.039999962
FEV1_baseline
64.10721285
FEVpcpred
3.064374924
FVC
-1.243733992
FVCZ
84.54076738
FVCpcpred
5065
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
40458
RawReads_ASVpipeline
SRS10484006
SRA accession
BSP0232
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
8.2
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0232
barcode
806rcbc228
barcode_806R
NCBI
broker name
315
cd4
2017-11-03
collection_date
yes
cotrimoxazole
yes
cough_enrl
2009-01-27T00:00:00
dateart
2008-12-12T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.85
duryart
2018-04-24T00:00:00
endfollowup
['NA', '2017-11-03T00:00:00']
endtreatdate
2016-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.669934313
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.9
host_age
17.209635
host_body_mass_index
HIV-associated chronic lung disease
host_disease
64.10721285
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1038
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TACCTCTCAGAA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-04-24T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.029955812
templateDNA_16SqPCR
22.61626368
templateDNA_16SqPCR_Cq
42232.69
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-03T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
46.4
weight
D04
well
-1.7189562
zbmiuk
-1.6158924
zhauk
-2.3884976
zwauk
no
zymo_DNA