MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246957
External Id
11922
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
28323
RawReads_ASVpipeline
SRS10548938
SRA accession
BYE12WT3
Submitter Id
Not Adherent
adherence
no
adm
12.55
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE12WT3
barcode
806rcbc317
barcode_806R
NCBI
broker name
2019-01-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-01-03T00:00:00
dateart
2017-01-03T00:00:00
datehiv
0.65
duryart
2019-01-14T00:00:00
endfollowup
['not applicable', '2017-11-20T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
14.5
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3039
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGTGGTTAGCAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-14T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
2.89e-06
templateDNA_16SqPCR
36.25061138
templateDNA_16SqPCR_Cq
4.08
templateDNA_16SqPCR_copies
human sputum metagenome
title
By Physician
treatstopreason
Placebo
trial_arm
Week 72
visit
7
visittotno
E03
well
no
zymo_DNA