MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-10-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248119
External Id
18033
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
34867
RawReads_ASVpipeline
SRS10620670
SRA accession
BSP0449
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.28
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0449
barcode
806rcbc374
barcode_806R
NCBI
broker name
60
cd4
2018-07-09
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-02-08T00:00:00
dateart
2006-11-15T00:00:00
datehiv
43290
dow
7.28
duryart
2018-07-09T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
19.6
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
female
host_sex
B1072
host_subject_id
human respiratory
host_tissue_sampled
TAGACTGTACTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
pure red cell aplaxia
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:05:00
sp05time
withdrawal
study_complt_stat
no
tbtreat
0.125962426
templateDNA_16SqPCR
20.26953739
templateDNA_16SqPCR_Cq
177585.9571
templateDNA_16SqPCR_copies
human sputum metagenome
title
Refused
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2018-04-23T00:00:00
visit_date
6
visittotno
6.2552724
vllog
1800000
vload
F10
well
no
zymo_DNA