MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-01-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246947
External Id
0.792691504
FEV1FVC
-1.733281813
FEV1FVCZ
1.41
FEV1_baseline
62.74458778
FEVpcpred
1.778749943
FVC
-2.218912055
FVCZ
71.77783774
FVCpcpred
19161
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
56552
RawReads_ASVpipeline
SRS10548939
SRA accession
BYE10DT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.24
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE10DT3
barcode
806rcbc10
barcode_806R
NCBI
broker name
2018-05-07
collection_date
yes
cotrimoxazole
yes
cough_enrl
2012-04-04T00:00:00
dateart
2012-06-15T00:00:00
datehiv
4.71
duryart
2018-05-07T00:00:00
endfollowup
['NA', '2017-11-15T00:00:00']
endtreatdate
2016-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.7971566
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.3
host_age
18.632677
host_body_mass_index
HIV-associated chronic lung disease
host_disease
62.74458778
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3006
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTACATACCGGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-07T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['3', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
13:55:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.02368
templateDNA_16SqPCR
23.07
templateDNA_16SqPCR_Cq
33384.84
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-07T00:00:00
visit_date
7
visittotno
41.2
weight
C01
well
-0.39943728
zbmiuk
-1.8591859
zhauk
-1.4439087
zwauk
no
zymo_DNA