MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-03-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246703
External Id
0.903083687
FEV1FVC
0.054784347
FEV1FVCZ
2.049999952
FEV1_baseline
92.028705
FEVpcpred
2.269999981
FVC
-0.663256284
FVCZ
91.47173762
FVCpcpred
9562
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
34963
RawReads_ASVpipeline
SRS10548225
SRA accession
BSP0658
Submitter Id
AR
WRrepeats
AR
WRrepeats_WP
yes
acut_exac12m
Adherent
adherence
no
adm
5.3
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0658
barcode
806rcbc80
barcode_806R
NCBI
broker name
2019-03-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-06-28T00:00:00
dateart
2011-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.32
duryart
2019-03-12T00:00:00
endfollowup
['NA', '2018-09-25T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.614654396
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13
host_age
16.774647
host_body_mass_index
HIV-associated chronic lung disease
host_disease
92.028705
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1143
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTGCGCATACTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.353694109
templateDNA_16SqPCR
19.09924185
templateDNA_16SqPCR_Cq
498649.55
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-03-12T00:00:00
visit_date
7
visittotno
38.4
weight
A10
well
-0.93659723
zbmiuk
-0.57390517
zhauk
-0.97253025
zwauk
no
zymo_DNA