MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-07-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246607
External Id
0.908489531
FEV1FVC
0.029685108
FEV1FVCZ
2.06
FEV1_baseline
84.52029248
FEVpcpred
2.267499924
FVC
-1.220810385
FVCZ
84.18349023
FVCpcpred
13753
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
38533
RawReads_ASVpipeline
SRS10548222
SRA accession
BSP0195
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.93
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0195
barcode
806rcbc86
barcode_806R
NCBI
broker name
694
cd4
2017-09-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2009-05-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.28
duryart
2019-02-12T00:00:00
endfollowup
['2018-08-28T00:00:00', '2018-08-28T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.1862735
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.2
host_age
15.313274
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.52029248
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1128
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCCCAGAACAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:58:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.661
templateDNA_16SqPCR
18.19134825
templateDNA_16SqPCR_Cq
932369.53
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-22T00:00:00
visit_date
7
visittotno
2.1003706
vllog
126
vload
35.8
weight
G10
well
-2.5065842
zbmiuk
-1.5535731
zhauk
-3.0019886
zwauk
no
zymo_DNA