MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-11-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249009
External Id
0.792316923
FEV1FVC
-1.397703236
FEV1FVCZ
1.649999976
FEV1_baseline
77.85004717
FEVpcpred
2.082499981
FVC
-1.076808748
FVCZ
86.67802842
FVCpcpred
20231
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
42281
RawReads_ASVpipeline
SRS10550331
SRA accession
BSP0690
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.66
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0690
barcode
806rcbc61
barcode_806R
NCBI
broker name
547
cd4
2019-06-17
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-07-15T00:00:00
dateart
2005-12-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.99
duryart
2019-06-17T00:00:00
endfollowup
['NA', '2019-06-17T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.650270197
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.5
host_age
14.375099
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.85004717
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1221
host_subject_id
human respiratory
host_tissue_sampled
ATGAGACTCCAC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-17T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:45:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.00895587
templateDNA_16SqPCR
23.95635454
templateDNA_16SqPCR_Cq
12626.27884
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-06-17T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
30.6
weight
F07
well
-2.6388993
zbmiuk
-1.6297715
zhauk
-2.5005574
zwauk
no
zymo_DNA