MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-10-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250792
External Id
0.867208618
FEV1FVC
-0.141653103
FEV1FVCZ
2.599999905
FEV1_baseline
76.40835285
FEVpcpred
2.998125076
FVC
-1.875791849
FVCZ
76.70773103
FVCpcpred
15993
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
26572
RawReads_ASVpipeline
SRS10620453
SRA accession
BSP0421
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0421
barcode
806rcbc186
barcode_806R
NCBI
broker name
2018-06-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-02-15T00:00:00
dateart
2012-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.95
duryart
2018-06-14T00:00:00
endfollowup
['NA', '2017-12-21T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.813345388
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.6
host_age
17.971235
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.40835285
host_height
yes
host_hiv_stat
male
host_sex
B1048
host_subject_id
human respiratory
host_tissue_sampled
AAGATGGATCAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:43:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.251431843
templateDNA_16SqPCR
19.50429446
templateDNA_16SqPCR_Cq
354476.8535
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-06-14T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
50
weight
C11
well
-1.7078842
zbmiuk
-1.5008762
zhauk
-2.5344312
zwauk
no
zymo_DNA