A
BRrepeats
MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-11-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250711
External Id
21521
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
37910
RawReads_ASVpipeline
SRS10620494
SRA accession
BRrepeat_R2_BSP0008
Submitter Id
Adherent
adherence
no
adm
8.04
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0008
barcode
806rcbc53
barcode_806R
NCBI
broker name
2016-08-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-12-14T00:00:00
dateart
2006-06-15T00:00:00
datehiv
4.7
duryart
2018-01-11T00:00:00
endfollowup
['not applicable', '2017-07-20T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
12.7
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1008
host_subject_id
human respiratory
host_tissue_sampled
GAGGCTCATCAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-11T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
induced
sampling_induced_expectorated
BRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.091979352
templateDNA_16SqPCR
21.14497136
templateDNA_16SqPCR_Cq
129675.5054
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
7
visittotno
F06
well
no
zymo_DNA