MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-12-25T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108620
External Id
0.636488348
FEV1FVC
-3.157188705
FEV1FVCZ
1.450000048
FEV1_baseline
60.22418718
FEVpcpred
2.278125048
FVC
-1.13962445
FVCZ
85.31660118
FVCpcpred
16693
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
44318
RawReads_ASVpipeline
SRS10483885
SRA accession
BSP0309
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
9.5
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0309
barcode
806rcbc330
barcode_806R
NCBI
broker name
1042
cd4
2018-02-16
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-06-25T00:00:00
dateart
2012-04-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.71
duryart
2018-07-27T00:00:00
endfollowup
['NA', '2018-02-16T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.978550609
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.1
host_age
15.685613
host_body_mass_index
HIV-associated chronic lung disease
host_disease
60.22418718
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1056
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TACGTAGTTTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:36:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.528496157
templateDNA_16SqPCR
18.40831528
templateDNA_16SqPCR_Cq
745091.2
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-16T00:00:00
visit_date
7
visittotno
4.0569048
vllog
11400
vload
37.2
weight
B05
well
-1.9348837
zbmiuk
-0.93943894
zhauk
-2.0256722
zwauk
no
zymo_DNA