MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-05-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246638
External Id
0.911048174
FEV1FVC
0.415573275
FEV1FVCZ
2.01
FEV1_baseline
72.3894672
FEVpcpred
2.206249952
FVC
-2.39598611
FVCZ
70.38291557
FVCpcpred
8345
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
47374
RawReads_ASVpipeline
SRS10548147
SRA accession
BSP0389
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
15.03
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0389
barcode
806rcbc321
barcode_806R
NCBI
broker name
326
cd4
2018-04-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-05-15T00:00:00
dateart
2017-03-31T00:00:00
datehiv
COTIMOXAZOLE, METRONIDAZOLE
drug_usage
0.94
duryart
2019-03-27T00:00:00
endfollowup
['2019-03-27T00:00:00', '2019-03-27T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.0408533
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.9
host_age
15.188478
host_body_mass_index
HIV-associated chronic lung disease
host_disease
72.3894672
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1206
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGTACACGGCGA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-03-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTIMOXAZOLE, METRONIDAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:50:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.660697692
templateDNA_16SqPCR
18.0795091
templateDNA_16SqPCR_Cq
931473.26
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-04-20T00:00:00
visit_date
5
visittotno
2.6294096
vllog
426
vload
37.2
weight
A04
well
-2.8961587
zbmiuk
-2.2030594
zhauk
-3.2294416
zwauk
no
zymo_DNA