MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-10-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108658
External Id
0.790975469
FEV1FVC
-1.283188053
FEV1FVCZ
1.49000001
FEV1_baseline
82.63681085
FEVpcpred
1.883749962
FVC
-0.758671027
FVCZ
90.5785259
FVCpcpred
14630
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
34115
RawReads_ASVpipeline
SRS10483921
SRA accession
BSP0558
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.66
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0558
barcode
806rcbc61
barcode_806R
NCBI
broker name
2018-11-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-08T00:00:00
dateart
2014-04-28T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.03
duryart
2018-11-05T00:00:00
endfollowup
['NA', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.374350066
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11
host_age
16.404955
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.63681085
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1086
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATGAGACTCCAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-05T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:15:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.128948032
templateDNA_16SqPCR
20.56304483
templateDNA_16SqPCR_Cq
181795.16
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-11-05T00:00:00
visit_date
7
visittotno
32.8
weight
F07
well
-0.28813115
zbmiuk
-0.34841517
zhauk
-0.36162806
zwauk
no
zymo_DNA