MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-03-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248958
External Id
0.91973962
FEV1FVC
0.55197452
FEV1FVCZ
2.12
FEV1_baseline
73.70736175
FEVpcpred
2.305000067
FVC
-2.365111891
FVCZ
70.67252044
FVCpcpred
16754
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
35000
RawReads_ASVpipeline
SRS10550339
SRA accession
BSP0511
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
14.14
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0511
barcode
806rcbc99
barcode_806R
NCBI
broker name
1058
cd4
2018-08-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-05-05T00:00:00
dateart
2013-04-24T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.32
duryart
2019-07-31T00:00:00
endfollowup
['2019-07-31T00:00:00', '2019-07-31T00:00:00']
endtreatdate
2018-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.0307486
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.4
host_age
16.886478
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.70736175
host_height
yes
host_hiv_stat
male
host_sex
B1237
host_subject_id
human respiratory
host_tissue_sampled
ATTGGGCTAGGC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-07-31T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:00:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.011941515
templateDNA_16SqPCR
23.5383336
templateDNA_16SqPCR_Cq
16835.53944
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-08-20T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
40.1
weight
D12
well
-2.6282091
zbmiuk
-3.3261244
zhauk
-4.9885736
zwauk
no
zymo_DNA