MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-03-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246617
External Id
0.881027099
FEV1FVC
-0.455448832
FEV1FVCZ
1.93
FEV1_baseline
79.62252165
FEVpcpred
2.190624952
FVC
-1.39932489
FVCZ
81.85470563
FVCpcpred
15027
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
35094
RawReads_ASVpipeline
SRS10548246
SRA accession
BSP0278
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.47
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0278
barcode
806rcbc291
barcode_806R
NCBI
broker name
259
cd4
2018-01-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-09-15T00:00:00
dateart
2012-08-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.36
duryart
2019-06-18T00:00:00
endfollowup
['2019-01-09T00:00:00', '2019-01-09T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.5550866
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.8
host_age
18.759933
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.62252165
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1161
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGCATGAGGATC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:25:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.868127297
templateDNA_16SqPCR
17.58495831
templateDNA_16SqPCR_Cq
1223914.32
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-09T00:00:00
visit_date
7
visittotno
5.0644579
vllog
116000
vload
43.4
weight
C12
well
-0.67399621
zbmiuk
-1.8037235
zhauk
-1.7547728
zwauk
no
zymo_DNA