MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-04-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248942
External Id
0.920289844
FEV1FVC
0.389483225
FEV1FVCZ
1.27
FEV1_baseline
54.87073476
FEVpcpred
1.379999995
FVC
-3.767801595
FVCZ
53.4902369
FVCpcpred
23362
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
40473
RawReads_ASVpipeline
SRS10550325
SRA accession
BSP0440
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
8.67
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0440
barcode
806rcbc270
barcode_806R
NCBI
broker name
32
cd4
2018-07-03
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-12-15T00:00:00
dateart
2013-11-03T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.55
duryart
2019-06-04T00:00:00
endfollowup
['2019-06-04T00:00:00', '2019-06-04T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-3.360132
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.2
host_age
14.769387
host_body_mass_index
HIV-associated chronic lung disease
host_disease
54.87073476
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1215
host_subject_id
human respiratory
host_tissue_sampled
TACCCAGAGATC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-04T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:52:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.499876835
templateDNA_16SqPCR
18.06170802
templateDNA_16SqPCR_Cq
704742.7461
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-06-27T00:00:00
visit_date
5
visittotno
4.6693168
vllog
46700
vload
34.8
weight
F09
well
-2.2503157
zbmiuk
-0.41615522
zhauk
-1.7465096
zwauk
no
zymo_DNA