MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-06-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246914
External Id
0.807190455
FEV1FVC
-1.343566242
FEV1FVCZ
1.74
FEV1_baseline
74.38920611
FEVpcpred
2.155625105
FVC
-1.359588278
FVCZ
83.10839291
FVCpcpred
14751
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
54805
RawReads_ASVpipeline
SRS10548911
SRA accession
BYC157T3
Submitter Id
AAI
WRrepeats
AAI
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
13.98
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC157T3
barcode
806rcbc335
barcode_806R
NCBI
broker name
1079
cd4
2018-06-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-15T00:00:00
dateart
2015-06-15T00:00:00
datehiv
2.97
duryart
2019-05-06T00:00:00
endfollowup
['2019-04-30T00:00:00', '2019-04-30T00:00:00']
endtreatdate
2018-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-1.9198601
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.9
host_age
19.463055
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.38920611
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3101
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACATCCGCGAAG
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-06T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['3', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:35:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.019914073
templateDNA_16SqPCR
23.23686836
templateDNA_16SqPCR_Cq
28075.51
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-05-26T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
39.8
weight
G05
well
-0.4598076
zbmiuk
-4.5490737
zhauk
-3.6439369
zwauk
no
zymo_DNA