MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-10-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246896
External Id
0.745534518
FEV1FVC
-2.213044917
FEV1FVCZ
1.8
FEV1_baseline
72.53364037
FEVpcpred
2.414375067
FVC
-0.975376149
FVCZ
87.42489297
FVCpcpred
18225
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
41850
RawReads_ASVpipeline
SRS10548943
SRA accession
BYC11AT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
5.68
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYC11AT3
barcode
806rcbc43
barcode_806R
NCBI
broker name
571
cd4
2017-09-20
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2009-06-15T00:00:00
datehiv
8.27
duryart
2019-02-06T00:00:00
endfollowup
['2018-08-22T00:00:00', '2018-08-22T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.0820103
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.9
host_age
16.352589
host_body_mass_index
HIV-associated chronic lung disease
host_disease
72.53364037
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3042
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AAGGAGCGCCTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-06T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:12:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.107107338
templateDNA_16SqPCR
20.83226527
templateDNA_16SqPCR_Cq
151003.44
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-16T00:00:00
visit_date
7
visittotno
1.690196
vllog
49
vload
40
weight
D05
well
-1.4614246
zbmiuk
-0.45978156
zhauk
-1.3995142
zwauk
no
zymo_DNA