MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-09-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246733
External Id
0.826156275
FEV1FVC
-0.680106339
FEV1FVCZ
2.589999914
FEV1_baseline
76.25869753
FEVpcpred
3.13499999
FVC
-1.612070888
FVCZ
79.92083446
FVCpcpred
19696
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
46825
RawReads_ASVpipeline
SRS10548281
SRA accession
BSP0740
Submitter Id
AAA
WRrepeats
AAA
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
12.45
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0740
barcode
806rcbc240
barcode_806R
NCBI
broker name
2019-08-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-02-15T00:00:00
dateart
2011-02-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.11
duryart
2019-08-14T00:00:00
endfollowup
['NA', '2019-02-27T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.847943557
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.9
host_age
17.962597
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.25869753
host_height
yes
host_hiv_stat
male
host_sex
B1197
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGTAGGAACAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:30:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.00342
templateDNA_16SqPCR
25.85976351
templateDNA_16SqPCR_Cq
4820.42
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-08-14T00:00:00
visit_date
7
visittotno
49.2
weight
H05
well
-2.2220862
zbmiuk
-1.7383653
zhauk
-3.1648452
zwauk
no
zymo_DNA