MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-11-26T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248995
External Id
19423
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
38821
RawReads_ASVpipeline
SRS10550401
SRA accession
BSP0642
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
1.22
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0642
barcode
806rcbc2
barcode_806R
NCBI
broker name
2019-02-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-02-15T00:00:00
dateart
2007-07-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.64
duryart
2019-02-22T00:00:00
endfollowup
['NA', '2018-09-07T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.2
host_age
14.805354
host_body_mass_index
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1136
host_subject_id
human respiratory
host_tissue_sampled
AATCCGTACAGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:12:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.043634381
templateDNA_16SqPCR
21.82853326
templateDNA_16SqPCR_Cq
61517.18024
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-02-22T00:00:00
visit_date
7
visittotno
1.7075702
vllog
51
vload
28.4
weight
C12
well
-1.739471
zbmiuk
-1.5325685
zhauk
-2.0527542
zwauk
no
zymo_DNA