MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-11-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246690
External Id
0.832104817
FEV1FVC
-1.301017201
FEV1FVCZ
1.269999981
FEV1_baseline
66.29024504
FEVpcpred
1.526250005
FVC
-2.125321204
FVCZ
72.95854991
FVCpcpred
8965
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
35461
RawReads_ASVpipeline
SRS10548256
SRA accession
BSP0611
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
6.51
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0611
barcode
806rcbc188
barcode_806R
NCBI
broker name
720
cd4
2019-01-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-05-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.75
duryart
2019-07-02T00:00:00
endfollowup
['NA', '2019-01-15T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.539964597
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.2
host_age
18.848917
host_body_mass_index
HIV-associated chronic lung disease
host_disease
66.29024504
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1177
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ACGATGCGACCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:17:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.227519001
templateDNA_16SqPCR
19.67629943
templateDNA_16SqPCR_Cq
320763.74
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-17T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
36
weight
E11
well
-0.27027491
zbmiuk
-3.3991129
zhauk
-2.278625
zwauk
no
zymo_DNA