MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-04-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246678
External Id
0.92731597
FEV1FVC
0.714484403
FEV1FVCZ
2.4400000569999998
FEV1_baseline
79.87063626
FEVpcpred
2.631249905
FVC
-1.946480815
FVCZ
75.85338242
FVCpcpred
11401
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:33Z
INSDC first public
2022-11-29T01:24:33Z
INSDC last update
public
INSDC status
48586
RawReads_ASVpipeline
SRS10548186
SRA accession
BSP0572
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
12.79
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0572
barcode
806rcbc187
barcode_806R
NCBI
broker name
2018-12-13
collection_date
yes
cotrimoxazole
yes
cough_enrl
2014-01-15T00:00:00
dateart
2013-12-15T00:00:00
datehiv
3.58
duryart
2018-12-13T00:00:00
endfollowup
['NA', '2018-07-18T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.532043372
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.7
host_age
17.578125
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.87063626
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1105
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGCCGGCACATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-13T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.009262066
templateDNA_16SqPCR
24.48012503
templateDNA_16SqPCR_Cq
13057.96
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-12-13T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
45
weight
D11
well
-1.6949793
zbmiuk
-2.3954706
zhauk
-3.0828524
zwauk
no
zymo_DNA