MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-02-24T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246726
External Id
0.78669834
FEV1FVC
-1.637441856
FEV1FVCZ
2.069999933
FEV1_baseline
82.68216781
FEVpcpred
2.631249905
FVC
-0.45067016
FVCZ
93.99511998
FVCpcpred
6221
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
35119
RawReads_ASVpipeline
SRS10548264
SRA accession
BSP0720
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
8.31
ageyart
yes
all_3
yes
antibiotic12m
2
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0720
barcode
806rcbc293
barcode_806R
NCBI
broker name
2019-07-18
collection_date
no
cotrimoxazole
no
cough_enrl
2008-06-15T00:00:00
dateart
2008-06-01T00:00:00
datehiv
9.71
duryart
2019-07-18T00:00:00
endfollowup
['NA', '2019-01-31T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.322650602
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.3
host_age
29.536171
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.68216781
host_height
yes
host_hiv_stat
female
host_sex
B1184
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATAGCGGTCTGG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:45:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.009575927
templateDNA_16SqPCR
24.32066346
templateDNA_16SqPCR_Cq
13500.46
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-07-18T00:00:00
visit_date
7
visittotno
68.6
weight
E12
well
2.0891607
zbmiuk
-1.8593718
zhauk
1.1293826
zwauk
no
zymo_DNA