MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-08-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246919
External Id
0.863873204
FEV1FVC
-0.309501451
FEV1FVCZ
2.59
FEV1_baseline
84.65156543
FEVpcpred
2.998125076
FVC
-1.100060712
FVCZ
86.31372577
FVCpcpred
12351
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
49833
RawReads_ASVpipeline
SRS10548902
SRA accession
BYD107T3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
12.51
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYD107T3
barcode
806rcbc114
barcode_806R
NCBI
broker name
704
cd4
2018-01-11
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-02-08T00:00:00
dateart
2012-09-10T00:00:00
datehiv
4
duryart
2018-06-28T00:00:00
endfollowup
['NA', '2018-01-11T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.167898273
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.4
host_age
16.459467
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.65156543
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3010
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGCCTAAGCACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:42:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.009909
templateDNA_16SqPCR
24.36
templateDNA_16SqPCR_Cq
13970.03
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-11T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
42.4
weight
C02
well
-2.3838303
zbmiuk
-2.269012
zhauk
-3.4549572
zwauk
no
zymo_DNA