MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-12-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248909
External Id
0.813803006
FEV1FVC
-0.943723538
FEV1FVCZ
2.83
FEV1_baseline
82.64177356
FEVpcpred
3.477499962
FVC
-0.919417735
FVCZ
88.56142052
FVCpcpred
20721
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
42434
RawReads_ASVpipeline
SRS10550384
SRA accession
BSP0190
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.48
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0190
barcode
806rcbc155
barcode_806R
NCBI
broker name
389
cd4
2017-09-21
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-06-15T00:00:00
dateart
2007-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.27
duryart
2019-02-07T00:00:00
endfollowup
['2018-08-23T00:00:00', '2018-08-23T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.3055743
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.7
host_age
15.76
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.64177356
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1124
host_subject_id
human respiratory
host_tissue_sampled
AACGAGAACTGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-07T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.011943188
templateDNA_16SqPCR
23.64125125
templateDNA_16SqPCR_Cq
16837.89768
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-18T00:00:00
visit_date
7
visittotno
2.4440448
vllog
278
vload
45.6
weight
D07
well
-2.7002316
zbmiuk
-0.73055625
zhauk
-2.3784144
zwauk
no
zymo_DNA