MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-02-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249032
External Id
0.905660389
FEV1FVC
-0.022384956
FEV1FVCZ
1.74
FEV1_baseline
85.45343336
FEVpcpred
1.921249986
FVC
-1.130589792
FVCZ
85.50924693
FVCpcpred
15295
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
33714
RawReads_ASVpipeline
SRS10550358
SRA accession
BYC10PT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Abnormal Sat
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
12.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10PT3
barcode
806rcbc20
barcode_806R
NCBI
broker name
761
cd4
2017-06-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-10-10T00:00:00
dateart
2016-10-10T00:00:00
datehiv
0.69
duryart
2018-11-05T00:00:00
endfollowup
['2018-05-21T00:00:00', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.1154852
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.3
host_age
17.650463
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.45343336
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3024
host_subject_id
human respiratory
host_tissue_sampled
GGATCGCAGATC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-05T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:26:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.051438065
templateDNA_16SqPCR
21.5
templateDNA_16SqPCR_Cq
72519.0703
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-12T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
36.6
weight
E02
well
-0.60414547
zbmiuk
-1.9302409
zhauk
-1.5577024
zwauk
no
zymo_DNA