MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-10-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246720
External Id
0.911995007
FEV1FVC
0.038477898
FEV1FVCZ
1.820000052
FEV1_baseline
90.82079393
FEVpcpred
1.995625019
FVC
-0.72678837
FVCZ
90.61643652
FVCpcpred
4248
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
32767
RawReads_ASVpipeline
SRS10548253
SRA accession
BSP0705
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
11.38
ageyart
yes
all_3
no
antibiotic12m
2
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0705
barcode
806rcbc169
barcode_806R
NCBI
broker name
2019-06-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-02-28T00:00:00
dateart
2014-04-17T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
0.94
duryart
2019-06-25T00:00:00
endfollowup
['NA', '2019-01-08T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.707038583
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
13.7
host_age
20.177204
host_body_mass_index
HIV-associated chronic lung disease
host_disease
90.82079393
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1175
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCTCAGTGCAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-25T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
morexella catarhalis blood culture positive
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.248889439
templateDNA_16SqPCR
19.54158457
templateDNA_16SqPCR_Cq
350892.49
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-06-25T00:00:00
visit_date
7
visittotno
40.8
weight
B09
well
0.36773396
zbmiuk
-2.4451425
zhauk
-1.1055762
zwauk
no
zymo_DNA