MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-05-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248929
External Id
0.836489709
FEV1FVC
-1.106662918
FEV1FVCZ
1.96
FEV1_baseline
79.07704537
FEVpcpred
2.343125105
FVC
-1.116405804
FVCZ
85.40656573
FVCpcpred
19537
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
42138
RawReads_ASVpipeline
SRS10550442
SRA accession
BSP0295
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.45
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0295
barcode
806rcbc309
barcode_806R
NCBI
broker name
643
cd4
2018-02-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-11-10T00:00:00
dateart
2013-11-05T00:00:00
datehiv
4.24
duryart
2019-06-24T00:00:00
endfollowup
['2019-01-07T00:00:00', '2019-01-07T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.5959295
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.6
host_age
24.229057
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.07704537
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1174
host_subject_id
human respiratory
host_tissue_sampled
ATGCGTAGTGCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-24T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.001899122
templateDNA_16SqPCR
26.27
templateDNA_16SqPCR_Cq
2677.444254
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-02T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
56.2
weight
E02
well
1.1185199
zbmiuk
-1.8429787
zhauk
-0.039202139
zwauk
no
zymo_DNA