MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-08-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246641
External Id
0.848806383
FEV1FVC
-0.524398986
FEV1FVCZ
1.600000024
FEV1_baseline
83.55684021
FEVpcpred
1.88499999
FVC
-1.084742051
FVCZ
86.59302248
FVCpcpred
12879
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
37936
RawReads_ASVpipeline
SRS10548141
SRA accession
BSP0418
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.12
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0418
barcode
806rcbc267
barcode_806R
NCBI
broker name
763
cd4
2018-06-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-09-25T00:00:00
dateart
2007-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
1.79
duryart
2018-12-07T00:00:00
endfollowup
['NA', '2018-06-12T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.248739722
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.8
host_age
15.859906
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.55684021
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1093
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGTTTGAGCTGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-07T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.068185009
templateDNA_16SqPCR
21.38706001
templateDNA_16SqPCR_Cq
96129.46
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-06-12T00:00:00
visit_date
7
visittotno
2.6580114
vllog
455
vload
31.8
weight
C09
well
-1.1805961
zbmiuk
-1.5481017
zhauk
-1.6915382
zwauk
no
zymo_DNA