MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-08-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108601
External Id
0.81134133
FEV1FVC
-1.525064979
FEV1FVCZ
0.930000007
FEV1_baseline
75.02599614
FEVpcpred
1.14625001
FVC
-1.280725844
FVCZ
83.63299356
FVCpcpred
17039
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
40191
RawReads_ASVpipeline
SRS10483982
SRA accession
BSP0117
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
1.07
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0117
barcode
806rcbc58
barcode_806R
NCBI
broker name
1788
cd4
2017-07-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-08-28T00:00:00
dateart
2009-03-18T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.95
duryart
2017-12-20T00:00:00
endfollowup
['NA', '2017-07-12T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.880979473
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
8.9
host_age
14.470933
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.02599614
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1006
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AATGCCTCAACT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2017-12-20T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:28:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.164313624
templateDNA_16SqPCR
20.21143913
templateDNA_16SqPCR_Cq
231654.73
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
no
visit012
no
visit018
yes
visit1218
2017-07-12T00:00:00
visit_date
7
visittotno
2.0644579
vllog
116
vload
22
weight
C07
well
-1.1079966
zbmiuk
-1.5798959
zhauk
-1.7193856
zwauk
no
zymo_DNA