MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-03-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246636
External Id
0.935208099
FEV1FVC
0.635358495
FEV1FVCZ
2.12
FEV1_baseline
80.71197015
FEVpcpred
2.266875029
FVC
-1.737316038
FVCZ
77.33972173
FVCpcpred
9488
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
39648
RawReads_ASVpipeline
SRS10548144
SRA accession
BSP0374
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.67
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0374
barcode
806rcbc195
barcode_806R
NCBI
broker name
20
cd4
2018-04-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-11-15T00:00:00
dateart
2011-11-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.4
duryart
2019-08-27T00:00:00
endfollowup
['2019-03-12T00:00:00', '2019-03-12T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.4725111
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
18
host_age
20.191069
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.71197015
host_height
yes
host_hiv_stat
female
host_sex
B1204
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTCGCCCTTCAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
anaemia
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:24:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.011959744
templateDNA_16SqPCR
24.09654715
templateDNA_16SqPCR_Cq
16861.24
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-04-06T00:00:00
visit_date
6
visittotno
4.9047155
vllog
80300
vload
49.2
weight
D12
well
-0.4019599
zbmiuk
-1.237177
zhauk
-1.1612716
zwauk
no
zymo_DNA