MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-03-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246625
External Id
2.56
FEV1_baseline
77.72384971
FEVpcpred
9405
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
61232
RawReads_ASVpipeline
SRS10548265
SRA accession
BSP0329
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.37
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0329
barcode
806rcbc88
barcode_806R
NCBI
broker name
356
cd4
2018-03-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-07-15T00:00:00
dateart
2009-07-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.64
duryart
2019-07-23T00:00:00
endfollowup
['2019-02-04T00:00:00', '2019-02-04T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.7197702
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19
host_age
15.020821
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.72384971
host_height
yes
host_hiv_stat
male
host_sex
B1187
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CACGGTTGTGAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.28741062
templateDNA_16SqPCR
19.40029461
templateDNA_16SqPCR_Cq
405200.91
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-01T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
40.4
weight
A11
well
-4.0784078
zbmiuk
-1.9038515
zhauk
-4.749042
zwauk
no
zymo_DNA