MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-05-11T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108608
External Id
0.785002016
FEV1FVC
-1.486466254
FEV1FVCZ
1.230000019
FEV1_baseline
43.50073644
FEVpcpred
1.566874981
FVC
-4.146657618
FVCZ
49.10747075
FVCpcpred
21464
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
53229
RawReads_ASVpipeline
SRS10484007
SRA accession
BSP0213
Submitter Id
yes
acut_exac12m
Not Adherent
adherence
no
adm
9.08
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0213
barcode
806rcbc197
barcode_806R
NCBI
broker name
344
cd4
2017-10-16
collection_date
yes
cotrimoxazole
yes
cough_enrl
2010-06-08T00:00:00
dateart
2008-10-13T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.44
duryart
2018-03-29T00:00:00
endfollowup
['NA', '2017-10-16T00:00:00']
endtreatdate
2016-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-4.094897855
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.4
host_age
16.431955
host_body_mass_index
HIV-associated chronic lung disease
host_disease
43.50073644
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1035
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCACTACCGAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:40:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.074190685
templateDNA_16SqPCR
21.35784521
templateDNA_16SqPCR_Cq
104596.46
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-10-16T00:00:00
visit_date
7
visittotno
4.9339933
vllog
85900
vload
40.4
weight
F12
well
-2.0808492
zbmiuk
-2.4135542
zhauk
-3.0616884
zwauk
no
zymo_DNA