MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-10-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246891
External Id
0.865153567
FEV1FVC
-0.772430927
FEV1FVCZ
1.62
FEV1_baseline
82.96886085
FEVpcpred
1.872499943
FVC
-0.978511695
FVCZ
87.40633944
FVCpcpred
18505
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
45599
RawReads_ASVpipeline
SRS10548930
SRA accession
BYC10RT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
1.23
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10RT3
barcode
806rcbc355
barcode_806R
NCBI
broker name
1062
cd4
2017-06-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-01-08T00:00:00
dateart
2004-10-10T00:00:00
datehiv
12.47
duryart
2018-06-01T00:00:00
endfollowup
['2018-06-01T00:00:00', '2018-06-01T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.303201
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.7
host_age
17.653061
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.96886085
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3026
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCCATAACTAGC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2018-06-01T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['10', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
LTFU
study_complt_stat
no
tbtreat
0.041807857
templateDNA_16SqPCR
22.14459621
templateDNA_16SqPCR_Cq
58942.09
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2017-06-22T00:00:00
visit_date
5
visittotno
4.6304278
vllog
42700
vload
34.6
weight
C08
well
-0.69500828
zbmiuk
-2.7797129
zhauk
-2.1791914
zwauk
no
zymo_DNA