MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-07-09T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246594
External Id
0.805369148
FEV1FVC
-0.968268678
FEV1FVCZ
3
FEV1_baseline
80.43947551
FEVpcpred
3.724999905
FVC
-1.109484014
FVCZ
86.18073546
FVCpcpred
16419
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
46534
RawReads_ASVpipeline
SRS10548247
SRA accession
BSP0136
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
16.18
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0136
barcode
806rcbc356
barcode_806R
NCBI
broker name
338
cd4
2017-08-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-09-12T00:00:00
dateart
2014-08-19T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.9
duryart
2019-01-08T00:00:00
endfollowup
['2018-07-09T00:00:00', '2018-07-09T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.5142661
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19
host_age
19.068342
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.43947551
host_height
yes
host_hiv_stat
male
host_sex
B1102
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CTGGTTAATCTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:55:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.08102139
templateDNA_16SqPCR
21.17018589
templateDNA_16SqPCR_Cq
114226.61
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-01T00:00:00
visit_date
7
visittotno
2.5705431
vllog
372
vload
57.4
weight
D08
well
-1.166582
zbmiuk
-0.54321873
zhauk
-1.4176643
zwauk
no
zymo_DNA