MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-03-24T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246906
External Id
0.802933121
FEV1FVC
-1.53168555
FEV1FVCZ
2.19
FEV1_baseline
86.2312516
FEVpcpred
2.727499962
FVC
-0.271144332
FVCZ
96.4703075
FVCpcpred
19867
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
55657
RawReads_ASVpipeline
SRS10548909
SRA accession
BYC12CT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.23
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC12CT3
barcode
806rcbc4
barcode_806R
NCBI
broker name
205
cd4
2018-05-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-06-15T00:00:00
dateart
2012-06-15T00:00:00
datehiv
5.94
duryart
2019-04-25T00:00:00
endfollowup
['2019-04-25T00:00:00', '2019-04-25T00:00:00']
endtreatdate
2018-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.0565227
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.1
host_age
19.067457
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.2312516
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3098
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TATCGTTGACCA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-04-25T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:20:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.005137073
templateDNA_16SqPCR
25.23235348
templateDNA_16SqPCR_Cq
7242.41
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-05-05T00:00:00
visit_date
5
visittotno
3.9537597
vllog
8990
vload
47.6
weight
E12
well
-0.17351843
zbmiuk
-0.33263987
zhauk
-0.401214
zwauk
no
zymo_DNA