MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-04-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248940
External Id
0.960384162
FEV1FVC
1.101752312
FEV1FVCZ
2
FEV1_baseline
84.19856206
FEVpcpred
2.082499981
FVC
-1.627642698
FVCZ
79.15121253
FVCpcpred
15391
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
30013
RawReads_ASVpipeline
SRS10550414
SRA accession
BSP0436
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.16
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0436
barcode
806rcbc231
barcode_806R
NCBI
broker name
1709
cd4
2018-06-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-06-15T00:00:00
dateart
2007-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.12
duryart
2018-12-14T00:00:00
endfollowup
['NA', '2018-06-29T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.210410328
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.2
host_age
18.393038
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.19856206
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1098
host_subject_id
human respiratory
host_tissue_sampled
TTCTGGGAACAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:45:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.005190457
templateDNA_16SqPCR
24.78003134
templateDNA_16SqPCR_Cq
7317.677056
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-06-29T00:00:00
visit_date
7
visittotno
1.80618
vllog
64
vload
43
weight
G04
well
-0.47675776
zbmiuk
-1.1392417
zhauk
-1.0831198
zwauk
no
zymo_DNA