MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-11-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108596
External Id
0.891062157
FEV1FVC
-0.120431002
FEV1FVCZ
2.05
FEV1_baseline
83.14815112
FEVpcpred
2.300625086
FVC
-1.251851485
FVCZ
83.47725039
FVCpcpred
11912
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
33169
RawReads_ASVpipeline
SRS10483914
SRA accession
BSP0096
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
16.48
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0096
barcode
806rcbc223
barcode_806R
NCBI
broker name
927
cd4
2017-06-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-30T00:00:00
dateart
2009-08-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.12
duryart
2018-10-29T00:00:00
endfollowup
['2018-05-14T00:00:00', '2018-05-14T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.2872864
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
18.784109
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.14815112
host_height
yes
host_hiv_stat
female
host_sex
B1082
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATTCATGGACGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:58:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.372795017
templateDNA_16SqPCR
18.84824827
templateDNA_16SqPCR_Cq
525578.63
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-07T00:00:00
visit_date
7
visittotno
2.7041504
vllog
506
vload
43
weight
G03
well
-1.2248011
zbmiuk
-2.0420856
zhauk
-2.3273802
zwauk
no
zymo_DNA