MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-10-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246923
External Id
0.843776576
FEV1FVC
-1.06057201
FEV1FVCZ
1.86
FEV1_baseline
82.90296815
FEVpcpred
2.204375029
FVC
-0.829480832
FVCZ
89.23826908
FVCpcpred
8366
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
42214
RawReads_ASVpipeline
SRS10548929
SRA accession
BYD10TT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
1.23
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD10TT3
barcode
806rcbc363
barcode_806R
NCBI
broker name
647
cd4
2018-06-01
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-01-08T00:00:00
dateart
2004-10-10T00:00:00
datehiv
12.47
duryart
2018-06-01T00:00:00
endfollowup
['NA', '2018-06-01T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.308262631
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.6
host_age
17.804968
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.90296815
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3026
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TATGTGGCCCAA
index_sequence
sputum
isolation_source
12 mths
lastvisit
2018-06-01T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
14:20:00
sp05time
LTFU
study_complt_stat
no
tbtreat
0.024318023
templateDNA_16SqPCR
22.94262711
templateDNA_16SqPCR_Cq
34284.35
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2018-06-01T00:00:00
visit_date
5
visittotno
39
weight
C09
well
-0.86365491
zbmiuk
-2.1223762
zhauk
-2.0118842
zwauk
no
zymo_DNA