MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-09-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250738
External Id
0.809367699
FEV1FVC
-1.152663222
FEV1FVCZ
2.16
FEV1_baseline
75.83743751
FEVpcpred
2.668750048
FVC
-1.369061666
FVCZ
82.99913063
FVCpcpred
19382
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
37691
RawReads_ASVpipeline
SRS10620458
SRA accession
BSP0068
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
10.34
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0068
barcode
806rcbc81
barcode_806R
NCBI
broker name
561
cd4
2017-04-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-02-02T00:00:00
dateart
2010-02-11T00:00:00
datehiv
6.17
duryart
2018-08-21T00:00:00
endfollowup
['2018-03-06T00:00:00', '2018-03-06T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.8022721
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.5
host_age
15.741004
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.83743751
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1061
host_subject_id
human respiratory
host_tissue_sampled
ACATTCAGCGCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-21T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.013486898
templateDNA_16SqPCR
23.91294293
templateDNA_16SqPCR_Cq
19014.27112
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-03-30T00:00:00
visit_date
7
visittotno
3.0413928
vllog
1100
vload
38.8
weight
B10
well
-2.6322508
zbmiuk
-2.4235637
zhauk
-3.4491882
zwauk
no
zymo_DNA