MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249017
External Id
0.7588492
FEV1FVC
-1.699638137
FEV1FVCZ
2.720000029
FEV1_baseline
87.36390418
FEVpcpred
3.584374905
FVC
0.058887798
FVCZ
100.7368056
FVCpcpred
16309
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
30802
RawReads_ASVpipeline
SRS10550450
SRA accession
BSP0707
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
9.35
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0707
barcode
806rcbc127
barcode_806R
NCBI
broker name
2019-06-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-01-15T00:00:00
dateart
2008-10-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.07
duryart
2019-06-27T00:00:00
endfollowup
['NA', '2019-01-10T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.989214324
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.7
host_age
21.226206
host_body_mass_index
HIV-associated chronic lung disease
host_disease
87.36390418
host_height
yes
host_hiv_stat
male
host_sex
B1176
host_subject_id
human respiratory
host_tissue_sampled
GGTCAGCTTAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:10:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.220153117
templateDNA_16SqPCR
19.39609063
templateDNA_16SqPCR_Cq
310379.0802
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-06-27T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
54
weight
H03
well
-0.27525309
zbmiuk
-2.5556111
zhauk
-2.0828035
zwauk
no
zymo_DNA