MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-07-16T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248044
External Id
0.781395313
FEV1FVC
-1.632974119
FEV1FVCZ
2.1
FEV1_baseline
71.52035259
FEVpcpred
2.6875
FVC
-1.441728849
FVCZ
81.0393613
FVCpcpred
23600
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
43970
RawReads_ASVpipeline
SRS10620652
SRA accession
BSP0024
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
9.41
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0024
barcode
806rcbc329
barcode_806R
NCBI
broker name
238
cd4
2016-10-12
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-12-14T00:00:00
dateart
2006-06-15T00:00:00
datehiv
9.83
duryart
2018-02-28T00:00:00
endfollowup
['2017-09-13T00:00:00', '2017-09-13T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.153652
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.2
host_age
20.670885
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.52035259
host_height
yes
host_hiv_stat
female
host_sex
B1023
host_subject_id
human respiratory
host_tissue_sampled
AATACCGCTTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-02-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.139076699
templateDNA_16SqPCR
20.12388423
templateDNA_16SqPCR_Cq
196074.8893
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-10-10T00:00:00
visit_date
7
visittotno
4.1818438
vllog
15200
vload
55.8
weight
A05
well
-0.33808282
zbmiuk
0.11093399
zhauk
-0.2743696
zwauk
no
zymo_DNA