MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249142
External Id
0.892844941
FEV1FVC
0.168717949
FEV1FVCZ
1.63
FEV1_baseline
84.83261178
FEVpcpred
1.825624943
FVC
-1.301380315
FVCZ
83.92330458
FVCpcpred
17724
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:44Z
INSDC first public
2022-11-29T01:24:44Z
INSDC last update
public
INSDC status
36059
RawReads_ASVpipeline
SRS10550511
SRA accession
BYC15GT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC15GT3
barcode
806rcbc262
barcode_806R
NCBI
broker name
778
cd4
2018-07-23
collection_date
yes
cotrimoxazole
no
cough_enrl
2019-06-17T00:00:00
endfollowup
['2019-04-30T00:00:00', '2019-04-30T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.145089
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.1
host_age
17.001158
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.83261178
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3106
host_subject_id
human respiratory
host_tissue_sampled
CCTTAAGTCAGT
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-17T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
yes
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:20:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.001253711
templateDNA_16SqPCR
26.86972972
templateDNA_16SqPCR_Cq
1767.522946
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
no
visit018
no
visit1218
2018-06-30T00:00:00
visit_date
5
visittotno
3.2695129
vllog
1860
vload
33.8
weight
F08
well
-0.59553957
zbmiuk
-1.8997988
zhauk
-1.5581884
zwauk
no
zymo_DNA