MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-10-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249035
External Id
0.763177396
FEV1FVC
-1.663289264
FEV1FVCZ
2.57
FEV1_baseline
85.39941125
FEVpcpred
3.367500067
FVC
-0.146855265
FVCZ
98.16349349
FVCpcpred
21764
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
41642
RawReads_ASVpipeline
SRS10550342
SRA accession
BYD102T3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Not Adherent
adherence
no
adm
7.65
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BYD102T3
barcode
806rcbc369
barcode_806R
NCBI
broker name
530
cd4
2017-10-09
collection_date
no
cotrimoxazole
yes
cough_enrl
2005-06-15T00:00:00
dateart
11.38
duryart
2018-03-28T00:00:00
endfollowup
['NA', '2017-10-02T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
-1.142363521
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.9
host_age
19.067711
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.39941125
host_height
yes
host_hiv_stat
male
host_sex
B3004
host_subject_id
human respiratory
host_tissue_sampled
TAATGGAGGAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.006783552
templateDNA_16SqPCR
24.56576671
templateDNA_16SqPCR_Cq
9563.673346
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-10-09T00:00:00
visit_date
7
visittotno
47
weight
A10
well
-1.3563929
zbmiuk
-2.9181936
zhauk
-3.4463658
zwauk
no
zymo_DNA