MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-07-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248908
External Id
0.821066813
FEV1FVC
-1.143773291
FEV1FVCZ
1.52
FEV1_baseline
65.35888452
FEVpcpred
1.851250052
FVC
-2.289324005
FVCZ
71.68201377
FVCpcpred
13159
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
29341
RawReads_ASVpipeline
SRS10550379
SRA accession
BSP0186
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
4.89
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0186
barcode
806rcbc113
barcode_806R
NCBI
broker name
85
cd4
2017-09-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-06-09T00:00:00
dateart
2005-05-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.28
duryart
2019-02-05T00:00:00
endfollowup
['2018-08-21T00:00:00', '2018-08-21T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.5522532
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.1
host_age
16.589506
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.35888452
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1122
host_subject_id
human respiratory
host_tissue_sampled
AGTTCCCGAGTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-05T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.007322891
templateDNA_16SqPCR
24.32
templateDNA_16SqPCR_Cq
10324.05193
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-15T00:00:00
visit_date
7
visittotno
2.7143297
vllog
518
vload
34.4
weight
B02
well
-1.8799704
zbmiuk
-3.9759927
zhauk
-4.0291376
zwauk
no
zymo_DNA