MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-12-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250722
External Id
0.843433725
FEV1FVC
-1.063359076
FEV1FVCZ
1.35
FEV1_baseline
65.98721578
FEVpcpred
1.600600004
FVC
-2.290721785
FVCZ
71.03177168
FVCpcpred
18317
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
32530
RawReads_ASVpipeline
SRS10620515
SRA accession
BSP0004
Submitter Id
A
WRrepeats
A
WRrepeats_WP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.19
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0004
barcode
806rcbc369
barcode_806R
NCBI
broker name
1005
cd4
2016-08-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-03-01T00:00:00
dateart
2010-03-01T00:00:00
datehiv
6.42
duryart
2017-12-19T00:00:00
endfollowup
['2017-07-04T00:00:00', '2017-07-04T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.5619926
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.6
host_age
17.650463
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.98721578
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1004
host_subject_id
human respiratory
host_tissue_sampled
TAATGGAGGAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2017-12-19T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:33:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.008517144
templateDNA_16SqPCR
24.37962785
templateDNA_16SqPCR_Cq
12007.74923
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-07-28T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
36.6
weight
A10
well
-0.67057049
zbmiuk
-2.1094472
zhauk
-1.7389969
zwauk
no
zymo_DNA