MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-04-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250827
External Id
13468
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:47Z
INSDC first public
2022-11-29T01:24:47Z
INSDC last update
public
INSDC status
23221
RawReads_ASVpipeline
SRS10620531
SRA accession
WRrepeat_BSP0259
Submitter Id
L
WRrepeats
L
WRrepeats_BP
Adherent
adherence
no
adm
8.18
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0259
barcode
806rcbc288
barcode_806R
NCBI
broker name
2018-01-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-15T00:00:00
dateart
2009-01-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.15
duryart
2018-01-08T00:00:00
endfollowup
['not applicable', '2017-07-12T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
15.7
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1007
host_subject_id
human respiratory
host_tissue_sampled
GGCAACCTCAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
yes
tbtreat
0.036688865
templateDNA_16SqPCR
22.23430748
templateDNA_16SqPCR_Cq
51725.16424
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
7
visittotno
H11
well
no
zymo_DNA