MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-12-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246909
External Id
0.776315791
FEV1FVC
-1.906759419
FEV1FVCZ
1.77
FEV1_baseline
83.6598039
FEVpcpred
2.279999971
FVC
-0.204568827
FVCZ
97.35000327
FVCpcpred
22910
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
48575
RawReads_ASVpipeline
SRS10548897
SRA accession
BYC130T3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
0
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC130T3
barcode
806rcbc359
barcode_806R
NCBI
broker name
1658
cd4
2018-04-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2004-12-01T00:00:00
dateart
2004-12-01T00:00:00
datehiv
13.34
duryart
2019-05-30T00:00:00
endfollowup
['2019-03-07T00:00:00', '2019-03-07T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.251117
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.3
host_age
17.076376
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.6598039
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3086
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGATAGCCACTT
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-05-30T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.228615322
templateDNA_16SqPCR
19.64246743
templateDNA_16SqPCR_Cq
322309.37
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-03-17T00:00:00
visit_date
6
visittotno
4.0413928
vllog
11000
vload
36.8
weight
G08
well
-0.88121063
zbmiuk
-1.4916365
zhauk
-1.4961342
zwauk
no
zymo_DNA