MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-12-13T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249126
External Id
0.819074342
FEV1FVC
-1.118266952
FEV1FVCZ
1.46
FEV1_baseline
88.52691933
FEVpcpred
1.782500029
FVC
-0.301923489
FVCZ
96.25852819
FVCpcpred
20014
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
38591
RawReads_ASVpipeline
SRS10550467
SRA accession
BYC11JT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
yes
all_3
no
antibiotic12m
0
any3_reasons
BYC11JT3
barcode
806rcbc290
barcode_806R
NCBI
broker name
440
cd4
2017-10-02
collection_date
['2018-03-29T00:00:00', 'missing']
endtreatdate
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-0.87468517
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.8
host_age
16.299356
host_body_mass_index
HIV-associated chronic lung disease
host_disease
88.52691933
host_height
yes
host_hiv_stat
B3048
host_subject_id
human respiratory
host_tissue_sampled
TACGGTATGTCT
index_sequence
sputum
isolation_source
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
14:00:00
sp05time
0.0307
templateDNA_16SqPCR
22.16392176
templateDNA_16SqPCR_Cq
43306.05849
templateDNA_16SqPCR_copies
human sputum metagenome
title
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-27T00:00:00
visit_date
5.0413928
vllog
110000
vload
28.4
weight
B12
well
-0.88500309
zbmiuk
-2.7691224
zhauk
-2.4465165
zwauk
no
zymo_DNA