MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-10-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248106
External Id
0.911076489
FEV1FVC
0.201550081
FEV1FVCZ
2.1900000569999998
FEV1_baseline
76.54738814
FEVpcpred
2.4037499430000002
FVC
-1.918283547
FVCZ
75.21781476
FVCpcpred
20563
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
37166
RawReads_ASVpipeline
SRS10620633
SRA accession
BSP0357
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.4
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0357
barcode
806rcbc294
barcode_806R
NCBI
broker name
224
cd4
2018-03-22
collection_date
yes
cotrimoxazole
yes
cough_enrl
2008-03-19T00:00:00
dateart
2007-03-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.09
duryart
2018-09-06T00:00:00
endfollowup
['NA', '2018-03-22T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.784858349
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.4
host_age
19.475977
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.54738814
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1067
host_subject_id
human respiratory
host_tissue_sampled
GTTTCTAGAGCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-09-06T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:55:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.181223176
templateDNA_16SqPCR
19.55441178
templateDNA_16SqPCR_Cq
255494.3731
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-22T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
52
weight
F12
well
-0.46206364
zbmiuk
0.000335492
zhauk
-0.54724336
zwauk
no
zymo_DNA