MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-04-28T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249151
External Id
0.916514327
FEV1FVC
0.212335521
FEV1FVCZ
1.88
FEV1_baseline
81.29703033
FEVpcpred
2.051249981
FVC
-1.551793009
FVCZ
80.12834139
FVCpcpred
13125
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:44Z
INSDC first public
2022-11-29T01:24:44Z
INSDC last update
public
INSDC status
27803
RawReads_ASVpipeline
SRS10550507
SRA accession
BYD13GT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
4.13
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYD13GT3
barcode
806rcbc308
barcode_806R
NCBI
broker name
762
cd4
2019-05-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2009-06-15T00:00:00
datehiv
8.96
duryart
2019-05-02T00:00:00
endfollowup
['NA', '2019-04-25T00:00:00']
endtreatdate
2018-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
0
f24mrcscore
-1.429051418
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14
host_age
19.108315
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.29703033
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3099
host_subject_id
human respiratory
host_tissue_sampled
GGCTGTATGGGT
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-02T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['3', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:30:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.05104961
templateDNA_16SqPCR
21.52
templateDNA_16SqPCR_Cq
71971.41332
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-05-02T00:00:00
visit_date
5
visittotno
43.8
weight
D02
well
-0.11905433
zbmiuk
-1.2603567
zhauk
-0.84911245
zwauk
no
zymo_DNA