MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-01-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248907
External Id
0.950495037
FEV1FVC
0.768454647
FEV1FVCZ
0.96
FEV1_baseline
85.43620027
FEVpcpred
1.00999999
FVC
-1.417450824
FVCZ
81.84035214
FVCpcpred
17349
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
31595
RawReads_ASVpipeline
SRS10550377
SRA accession
BSP0183
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.87
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0183
barcode
806rcbc232
barcode_806R
NCBI
broker name
611
cd4
2017-09-15
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-11-15T00:00:00
dateart
2012-09-06T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.83
duryart
2019-02-01T00:00:00
endfollowup
['2018-08-17T00:00:00', '2018-08-17T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.1040446
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
8.7
host_age
15.889785
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.43620027
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1121
host_subject_id
human respiratory
host_tissue_sampled
ATTATACCTCGG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-01T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:12:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.695811713
templateDNA_16SqPCR
17.57617148
templateDNA_16SqPCR_Cq
980978.1595
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-11T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
22.2
weight
H04
well
-0.19949508
zbmiuk
-2.2779391
zhauk
-1.4937731
zwauk
no
zymo_DNA