MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-05-06T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248901
External Id
0.892308548
FEV1FVC
0.30575778
FEV1FVCZ
3.05
FEV1_baseline
86.94025662
FEVpcpred
3.418100119
FVC
-1.245797915
FVCZ
84.48876282
FVCpcpred
9979
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
21927
RawReads_ASVpipeline
SRS10550435
SRA accession
BSP0127
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
11.19
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0127
barcode
806rcbc122
barcode_806R
NCBI
broker name
340
cd4
2017-07-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-07-15T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.04
duryart
2018-12-14T00:00:00
endfollowup
['2018-06-29T00:00:00', '2018-06-29T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.0175582
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.2
host_age
17.448839
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.94025662
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1099
host_subject_id
human respiratory
host_tissue_sampled
ACTCACGGTATG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
5.25268472
templateDNA_16SqPCR
14.77504771
templateDNA_16SqPCR_Cq
7405407.08
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-24T00:00:00
visit_date
7
visittotno
2.4698219
vllog
295
vload
49.6
weight
C03
well
-2.1783199
zbmiuk
-1.2458864
zhauk
-2.7549858
zwauk
no
zymo_DNA