MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-05-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108710
External Id
18931
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
46908
RawReads_ASVpipeline
SRS10483969
SRA accession
WRrepeat_BYD14NT3
Submitter Id
AAQ
WRrepeats
AAQ
WRrepeats_WP
Not Adherent
adherence
no
adm
6.61
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD14NT3
barcode
806rcbc87
barcode_806R
NCBI
broker name
2019-03-13
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-12-20T00:00:00
dateart
2005-12-20T00:00:00
datehiv
12.3
duryart
2019-06-03T00:00:00
endfollowup
['not applicable', '2018-12-10T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
19.8
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3088
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGCTGGAAGTCC
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-06-03T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
0.001916858
templateDNA_16SqPCR
26.66869386
templateDNA_16SqPCR_Cq
2702.45
templateDNA_16SqPCR_copies
human sputum metagenome
title
By Physician
treatstopreason
Placebo
trial_arm
Week 48
visit
6
visittotno
H10
well
no
zymo_DNA