MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-07-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108593
External Id
0.856209129
FEV1FVC
-0.818639557
FEV1FVCZ
1.309999943
FEV1_baseline
69.86279239
FEVpcpred
1.529999971
FVC
-2.039399542
FVCZ
74.75844902
FVCpcpred
14971
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
49696
RawReads_ASVpipeline
SRS10483979
SRA accession
BSP0091
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.06
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0091
barcode
806rcbc71
barcode_806R
NCBI
broker name
837
cd4
2017-05-31
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-08-07T00:00:00
dateart
2008-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.89
duryart
2017-11-15T00:00:00
endfollowup
['NA', '2017-05-31T00:00:00']
endtreatdate
2016-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.221432746
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.8
host_age
14.341685
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.86279239
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1003
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCGGCAATTACG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2017-11-15T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:10:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.00420362
templateDNA_16SqPCR
25.52950852
templateDNA_16SqPCR_Cq
5926.4
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
no
visit012
no
visit018
yes
visit1218
2017-05-31T00:00:00
visit_date
7
visittotno
2.8344207
vllog
683
vload
24.8
weight
H08
well
-3.6444209
zbmiuk
-5.3975725
zhauk
-6.2021117
zwauk
no
zymo_DNA