MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-07-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248906
External Id
0.861869943
FEV1FVC
-0.626072091
FEV1FVCZ
1.4
FEV1_baseline
68.99087105
FEVpcpred
1.624374986
FVC
-2.266514384
FVCZ
71.6022457
FVCpcpred
16397
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
32797
RawReads_ASVpipeline
SRS10550373
SRA accession
BSP0172
Submitter Id
I
WRrepeats
I
WRrepeats_BP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
6.92
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0172
barcode
806rcbc159
barcode_806R
NCBI
broker name
1194
cd4
2017-09-11
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-06-15T00:00:00
dateart
2012-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.24
duryart
2019-01-28T00:00:00
endfollowup
['2018-08-16T00:00:00', '2018-08-16T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.3435543
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.1
host_age
15.577982
host_body_mass_index
HIV-associated chronic lung disease
host_disease
68.99087105
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1117
host_subject_id
human respiratory
host_tissue_sampled
GCCTGAATTTAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:33:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.120502972
templateDNA_16SqPCR
20.27400629
templateDNA_16SqPCR_Cq
169889.0395
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-07T00:00:00
visit_date
7
visittotno
2.1760912
vllog
150
vload
33.8
weight
H07
well
-1.3479192
zbmiuk
-0.47494942
zhauk
-1.0869234
zwauk
no
zymo_DNA