MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108575
External Id
0.818366753
FEV1FVC
-1.321942686
FEV1FVCZ
1.76
FEV1_baseline
68.23423274
FEVpcpred
2.15062499
FVC
-1.9253711
FVCZ
75.05208823
FVCpcpred
12341
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
35874
RawReads_ASVpipeline
SRS10483997
SRA accession
BSP0030
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
9.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0030
barcode
806rcbc238
barcode_806R
NCBI
broker name
264
cd4
2016-10-21
collection_date
no
cotrimoxazole
no
cough_enrl
2009-05-25T00:00:00
dateart
2009-02-03T00:00:00
datehiv
7.41
duryart
2018-03-09T00:00:00
endfollowup
['2017-09-22T00:00:00', '2017-09-22T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.3984113
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17
host_age
21.477627
host_body_mass_index
HIV-associated chronic lung disease
host_disease
68.23423274
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1029
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CTCCTACTGTCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:56:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.638015258
templateDNA_16SqPCR
18.04521946
templateDNA_16SqPCR_Cq
899494.82
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-10-17T00:00:00
visit_date
7
visittotno
5.1335387
vllog
136000
vload
51.6
weight
F05
well
0.21784551
zbmiuk
-1.4064789
zhauk
-0.70853001
zwauk
no
zymo_DNA