MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-03-13T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246666
External Id
0.85311873
FEV1FVC
-0.247587568
FEV1FVCZ
2.650000095
FEV1_baseline
73.91650502
FEVpcpred
3.106250048
FVC
-2.030733836
FVCZ
74.76178194
FVCpcpred
15740
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
40524
RawReads_ASVpipeline
SRS10548216
SRA accession
BSP0502
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
9
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0502
barcode
806rcbc117
barcode_806R
NCBI
broker name
563
cd4
2018-08-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-03-15T00:00:00
dateart
2007-03-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.52
duryart
2019-02-08T00:00:00
endfollowup
['NA', '2018-08-24T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.025202647
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.4
host_age
16.87612
host_body_mass_index
HIV-associated chronic lung disease
host_disease
73.91650502
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1125
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGTCCGAAATAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.1613
templateDNA_16SqPCR
20.23
templateDNA_16SqPCR_Cq
227406.03
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-24T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
48.6
weight
F02
well
-2.8725123
zbmiuk
-1.1121308
zhauk
-3.2045903
zwauk
no
zymo_DNA