MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-08-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108643
External Id
0.748486534
FEV1FVC
-2.106692161
FEV1FVCZ
0.850000024
FEV1_baseline
37.73150118
FEVpcpred
1.135625005
FVC
-4.333932308
FVCZ
45.33380597
FVCpcpred
10355
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
49465
RawReads_ASVpipeline
SRS10484019
SRA accession
BSP0414
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
14.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0414
barcode
806rcbc350
barcode_806R
NCBI
broker name
2018-05-31
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-04-29T00:00:00
dateart
2010-05-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.71
duryart
2018-05-31T00:00:00
endfollowup
['NA', '2017-12-14T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-4.530630067
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.7
host_age
22.164091
host_body_mass_index
HIV-associated chronic lung disease
host_disease
37.73150118
host_height
yes
host_hiv_stat
female
host_sex
B1044
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AATTAGGCAGAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-31T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:35:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.279769656
templateDNA_16SqPCR
19.34508228
templateDNA_16SqPCR_Cq
394428.43
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-31T00:00:00
visit_date
7
visittotno
3.2479732
vllog
1770
vload
46.6
weight
F07
well
0.173163
zbmiuk
-3.0860174
zhauk
-1.6667918
zwauk
no
zymo_DNA