MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-06-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246717
External Id
0.814173871
FEV1FVC
-0.905748097
FEV1FVCZ
2.470000029
FEV1_baseline
71.46829132
FEVpcpred
3.0337500569999998
FVC
-1.912150135
FVCZ
76.31633968
FVCpcpred
8795
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:33Z
INSDC first public
2022-11-29T01:24:33Z
INSDC last update
public
INSDC status
46993
RawReads_ASVpipeline
SRS10548162
SRA accession
BSP0691
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.22
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0691
barcode
806rcbc315
barcode_806R
NCBI
broker name
663
cd4
2019-06-18
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-08-21T00:00:00
dateart
2010-08-07T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.89
duryart
2019-06-18T00:00:00
endfollowup
['NA', '2019-06-18T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.109354673
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16
host_age
16.093725
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.46829132
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1220
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GGATGTAAGTAG
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:45:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.052693025
templateDNA_16SqPCR
21.80380489
templateDNA_16SqPCR_Cq
74288.35
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
no
visit018
no
visit1218
2019-06-18T00:00:00
visit_date
5
visittotno
4.8915377
vllog
77900
vload
48
weight
C03
well
-2.1935277
zbmiuk
-0.10871515
zhauk
-1.5142914
zwauk
no
zymo_DNA