MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249166
External Id
0.714776597
FEV1FVC
-2.557865468
FEV1FVCZ
1.3
FEV1_baseline
55.21021362
FEVpcpred
1.818750024
FVC
-2.356351624
FVCZ
69.98857725
FVCpcpred
13224
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
28241
RawReads_ASVpipeline
SRS10550474
SRA accession
BYE11FT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
6.08
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE11FT3
barcode
806rcbc35
barcode_806R
NCBI
broker name
2019-04-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-07-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
7.39
duryart
2019-01-28T00:00:00
endfollowup
['NA', '2018-11-05T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-3.336320952
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.8
host_age
16.665936
host_body_mass_index
HIV-associated chronic lung disease
host_disease
55.21021362
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3059
host_subject_id
human respiratory
host_tissue_sampled
TTAGGGCTCGTA
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-01-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.382
templateDNA_16SqPCR
18.4742417
templateDNA_16SqPCR_Cq
538707.7011
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-04-24T00:00:00
visit_date
6
visittotno
38
weight
D04
well
-1.5356388
zbmiuk
-1.7430674
zhauk
-2.3373067
zwauk
no
zymo_DNA