MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108703
External Id
13230
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
44060
RawReads_ASVpipeline
SRS10483961
SRA accession
WRrepeat_BSP0736
Submitter Id
AZ
WRrepeats
AZ
WRrepeats_WP
Adherent
adherence
no
adm
7.59
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0736
barcode
806rcbc191
barcode_806R
NCBI
broker name
2019-08-06
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-09-15T00:00:00
dateart
2006-08-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.97
duryart
2019-08-06T00:00:00
endfollowup
['not applicable', '2019-08-06T00:00:00']
endtreatdate
2018-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
20.4
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
female
host_sex
B1241
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCTCGAAGATCG
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-08-06T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
0.182752243
templateDNA_16SqPCR
20.00508068
templateDNA_16SqPCR_Cq
257650.1
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
5
visittotno
H11
well
no
zymo_DNA