MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-04-18T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248944
External Id
0.80901776
FEV1FVC
-1.361227135
FEV1FVCZ
1.57
FEV1_baseline
56.82033848
FEVpcpred
1.940624952
FVC
-2.906246504
FVCZ
62.69086573
FVCpcpred
14326
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
31895
RawReads_ASVpipeline
SRS10550328
SRA accession
BSP0445
Submitter Id
Abnormal HR
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Not Adherent
adherence
no
adm
13.99
ageyart
no
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0445
barcode
806rcbc190
barcode_806R
NCBI
broker name
38
cd4
2018-07-06
collection_date
yes
cotrimoxazole
yes
cough_enrl
2014-04-15T00:00:00
dateart
2014-04-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.22
duryart
2019-06-10T00:00:00
endfollowup
['2019-06-10T00:00:00', '2019-06-10T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-3.2202971
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.2
host_age
21.146584
host_body_mass_index
HIV-associated chronic lung disease
host_disease
56.82033848
host_height
yes
host_hiv_stat
female
host_sex
B1218
host_subject_id
human respiratory
host_tissue_sampled
ACACTAGATCCG
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-10T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:06:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.672370579
templateDNA_16SqPCR
17.76963785
templateDNA_16SqPCR_Cq
947930.0795
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-07-02T00:00:00
visit_date
5
visittotno
4.8142476
vllog
65200
vload
54
weight
G11
well
-0.041177191
zbmiuk
-0.62831473
zhauk
-0.46997896
zwauk
no
zymo_DNA