MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2010-07-21T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248925
External Id
0.951267058
FEV1FVC
0.672095829
FEV1FVCZ
0.61
FEV1_baseline
63.13124531
FEVpcpred
0.641250014
FVC
-2.996658573
FVCZ
60.5575477
FVCpcpred
17329
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
34879
RawReads_ASVpipeline
SRS10550434
SRA accession
BSP0284
Submitter Id
O
WRrepeats
O
WRrepeats_WP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
4.9
ageyart
yes
all_3
yes
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0284
barcode
806rcbc255
barcode_806R
NCBI
broker name
124
cd4
2018-01-30
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-06-15T00:00:00
dateart
2014-06-20T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.63
duryart
2019-06-18T00:00:00
endfollowup
['2019-01-09T00:00:00', '2019-01-09T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.6598878
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
7.5
host_age
13.627952
host_body_mass_index
HIV-associated chronic lung disease
host_disease
63.13124531
host_height
yes
host_hiv_stat
male
host_sex
B1166
host_subject_id
human respiratory
host_tissue_sampled
CACGAGGTCATT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.103277526
templateDNA_16SqPCR
20.38073799
templateDNA_16SqPCR_Cq
145604.041
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-24T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
16.4
weight
G07
well
-1.6665475
zbmiuk
-2.8854477
zhauk
-3.4298816
zwauk
no
zymo_DNA