MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-11-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108711
External Id
18851
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:31Z
INSDC first public
2022-11-29T01:24:31Z
INSDC last update
public
INSDC status
49604
RawReads_ASVpipeline
SRS10483970
SRA accession
WRrepeat_BYE11HT3
Submitter Id
AAS
WRrepeats
AAS
WRrepeats_WP
Adherent
adherence
no
adm
7.58
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE11HT3
barcode
806rcbc244
barcode_806R
NCBI
broker name
2019-04-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-06-15T00:00:00
dateart
2016-06-15T00:00:00
datehiv
1.47
duryart
2019-04-24T00:00:00
endfollowup
['not applicable', '2018-11-05T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
10.4
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3061
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AGAACACGTCTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-24T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.014437096
templateDNA_16SqPCR
23.70711079
templateDNA_16SqPCR_Cq
20353.89
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
7
visittotno
D06
well
no
zymo_DNA