MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-12-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248121
External Id
0.772700922
FEV1FVC
-1.714179389
FEV1FVCZ
1.669999957
FEV1_baseline
63.09308286
FEVpcpred
2.161250114
FVC
-2.109615171
FVCZ
72.39570556
FVCpcpred
13141
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
28561
RawReads_ASVpipeline
SRS10620624
SRA accession
BSP0467
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
yes
adm
14.13
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0467
barcode
806rcbc41
barcode_806R
NCBI
broker name
2018-07-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-01-30T00:00:00
dateart
2009-04-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.11
duryart
2018-07-27T00:00:00
endfollowup
['NA', '2018-02-09T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.762820454
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.6
host_age
21.476181
host_body_mass_index
HIV-associated chronic lung disease
host_disease
63.09308286
host_height
yes
host_hiv_stat
female
host_sex
B1057
host_subject_id
human respiratory
host_tissue_sampled
TACAGATGGCTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
1
nadm
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:34:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.200072839
templateDNA_16SqPCR
19.42084004
templateDNA_16SqPCR_Cq
282069.2464
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-07-27T00:00:00
visit_date
7
visittotno
52.6
weight
B05
well
-0.14995328
zbmiuk
-1.1843526
zhauk
-0.73335969
zwauk
no
zymo_DNA