MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-08-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248938
External Id
0.839111074
FEV1FVC
-0.852596969
FEV1FVCZ
1.179999948
FEV1_baseline
90.98312636
FEVpcpred
1.40625
FVC
-0.27922354
FVCZ
96.40573941
FVCpcpred
14598
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
31811
RawReads_ASVpipeline
SRS10550380
SRA accession
BSP0417
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.46
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0417
barcode
806rcbc188
barcode_806R
NCBI
broker name
629
cd4
2018-06-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-02-12T00:00:00
dateart
2012-06-15T00:00:00
datehiv
4.4
duryart
2018-11-26T00:00:00
endfollowup
['NA', '2018-06-08T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.692066246
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
8.7
host_age
16.128773
host_body_mass_index
HIV-associated chronic lung disease
host_disease
90.98312636
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1092
host_subject_id
human respiratory
host_tissue_sampled
ACGATGCGACCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
R2
run_processing_batch
stored in primestore
samp_mat_process
['NA', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.129380271
templateDNA_16SqPCR
20.170466
templateDNA_16SqPCR_Cq
182404.5464
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-06-08T00:00:00
visit_date
7
visittotno
1.8573325
vllog
72
vload
25
weight
E11
well
0.099771775
zbmiuk
-1.3283304
zhauk
-0.72400123
zwauk
no
zymo_DNA