MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248923
External Id
0.884910476
FEV1FVC
0.226962115
FEV1FVCZ
1.73
FEV1_baseline
80.91966763
FEVpcpred
1.955000043
FVC
-1.658401778
FVCZ
79.54673643
FVCpcpred
12332
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
27041
RawReads_ASVpipeline
SRS10550427
SRA accession
BSP0282
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.62
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0282
barcode
806rcbc222
barcode_806R
NCBI
broker name
658
cd4
2018-01-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-12-12T00:00:00
dateart
2012-12-08T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.13
duryart
2019-06-18T00:00:00
endfollowup
['2019-01-11T00:00:00', '2019-01-11T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.4503688
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.7
host_age
17.59038
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.91966763
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1164
host_subject_id
human respiratory
host_tissue_sampled
GCGACTTGTGTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:41:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.06736423
templateDNA_16SqPCR
21.00857614
templateDNA_16SqPCR_Cq
94972.29902
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-23T00:00:00
visit_date
7
visittotno
1.9190781
vllog
83
vload
39
weight
F03
well
-0.14250192
zbmiuk
-0.53174794
zhauk
-0.36463675
zwauk
no
zymo_DNA