MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-08-31T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246672
External Id
0.8123077
FEV1FVC
-1.38600271
FEV1FVCZ
1.980000019
FEV1_baseline
74.34513802
FEVpcpred
2.4375
FVC
-1.362840407
FVCZ
82.21017307
FVCpcpred
13389
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
39141
RawReads_ASVpipeline
SRS10548226
SRA accession
BSP0534
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
11.54
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0534
barcode
806rcbc194
barcode_806R
NCBI
broker name
844
cd4
2018-09-26
collection_date
no
cotrimoxazole
no
cough_enrl
2013-03-15T00:00:00
dateart
2008-01-25T00:00:00
datehiv
4.61
duryart
2019-03-13T00:00:00
endfollowup
['NA', '2018-09-26T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.948302452
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17
host_age
27.251196
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.34513802
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1144
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TACGATGACCAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-13T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:34:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.273484279
templateDNA_16SqPCR
19.40017661
templateDNA_16SqPCR_Cq
385567.1
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-26T00:00:00
visit_date
7
visittotno
2.8920946
vllog
780
vload
67.6
weight
C12
well
1.7966888
zbmiuk
-0.99308866
zhauk
1.1546348
zwauk
no
zymo_DNA