MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-01-23T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250744
External Id
0.888888897
FEV1FVC
0.330033746
FEV1FVCZ
1.37
FEV1_baseline
75.70364192
FEVpcpred
1.54124999
FVC
-2.109989961
FVCZ
73.96474881
FVCpcpred
12030
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
20851
RawReads_ASVpipeline
SRS10620469
SRA accession
BSP0095
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.87
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0095
barcode
806rcbc169
barcode_806R
NCBI
broker name
643
cd4
2017-06-06
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-12-08T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.49
duryart
2018-10-23T00:00:00
endfollowup
['2018-05-08T00:00:00', '2018-05-08T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.9061947
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11.3
host_age
14.284996
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.70364192
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1081
host_subject_id
human respiratory
host_tissue_sampled
GCTCAGTGCAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:37:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.000731762
templateDNA_16SqPCR
27.88829082
templateDNA_16SqPCR_Cq
1031.662727
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-02T00:00:00
visit_date
7
visittotno
2.9079485
vllog
809
vload
28.4
weight
B09
well
-1.8634104
zbmiuk
-0.60121357
zhauk
-1.4987965
zwauk
no
zymo_DNA