MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-10-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250789
External Id
0.803587475
FEV1FVC
-1.533581256
FEV1FVCZ
2.24000001
FEV1_baseline
87.33950873
FEVpcpred
2.787499905
FVC
-0.153152885
FVCZ
97.97460626
FVCpcpred
15515
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
27409
RawReads_ASVpipeline
SRS10620477
SRA accession
BSP0408
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0408
barcode
806rcbc203
barcode_806R
NCBI
broker name
557
cd4
2018-05-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-07-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.95
duryart
2018-11-12T00:00:00
endfollowup
['NA', '2018-05-28T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.972625541
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.6
host_age
20.728409
host_body_mass_index
HIV-associated chronic lung disease
host_disease
87.33950873
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1088
host_subject_id
human respiratory
host_tissue_sampled
GGAGGTTATCCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:01:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.068789552
templateDNA_16SqPCR
21.43970762
templateDNA_16SqPCR_Cq
96981.76463
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-28T00:00:00
visit_date
7
visittotno
4.6493349
vllog
44600
vload
49.8
weight
C01
well
0.006245785
zbmiuk
-1.3958358
zhauk
-0.90775001
zwauk
no
zymo_DNA