MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-03-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249031
External Id
0.804502846
FEV1FVC
-1.270141951
FEV1FVCZ
1.34
FEV1_baseline
71.80531757
FEVpcpred
1.665624976
FVC
-1.699078588
FVCZ
79.04069465
FVCpcpred
15362
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
31267
RawReads_ASVpipeline
SRS10550351
SRA accession
BYC10MT3
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10MT3
barcode
806rcbc161
barcode_806R
NCBI
broker name
2969
cd4
2017-04-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-07-15T00:00:00
dateart
2007-06-15T00:00:00
datehiv
9.78
duryart
2018-09-12T00:00:00
endfollowup
['2018-03-28T00:00:00', '2018-03-28T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.1114678
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.1
host_age
14.906061
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.80531757
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3022
host_subject_id
human respiratory
host_tissue_sampled
TAAACCGCGTGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-09-12T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.190039093
templateDNA_16SqPCR
19.61035788
templateDNA_16SqPCR_Cq
267923.3421
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-04-18T00:00:00
visit_date
7
visittotno
4.2479734
vllog
17700
vload
28.8
weight
B08
well
-2.0024996
zbmiuk
-2.1213121
zhauk
-2.5903666
zwauk
no
zymo_DNA