MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-03-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246600
External Id
0.786344899
FEV1FVC
-1.727394847
FEV1FVCZ
1.67
FEV1_baseline
72.26519746
FEVpcpred
2.123749971
FVC
-1.299083956
FVCZ
82.92897724
FVCpcpred
15149
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
36049
RawReads_ASVpipeline
SRS10548198
SRA accession
BSP0158
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0158
barcode
806rcbc237
barcode_806R
NCBI
broker name
720
cd4
2017-09-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-07-15T00:00:00
dateart
2010-05-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.14
duryart
2019-01-22T00:00:00
endfollowup
['2018-08-06T00:00:00', '2018-08-06T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.1004202
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.5
host_age
21.716696
host_body_mass_index
HIV-associated chronic lung disease
host_disease
72.26519746
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1108
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCGTGTTAAACC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:01:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.248866915
templateDNA_16SqPCR
19.45217924
templateDNA_16SqPCR_Cq
350860.73
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-30T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
46.8
weight
E05
well
0.13641615
zbmiuk
-2.7829454
zhauk
-1.5821037
zwauk
no
zymo_DNA