MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-11-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108697
External Id
14091
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
34543
RawReads_ASVpipeline
SRS10483954
SRA accession
WRrepeat_BSP0549
Submitter Id
AG
WRrepeats
AG
WRrepeats_WP
Not Adherent
adherence
no
adm
16.48
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0549
barcode
806rcbc272
barcode_806R
NCBI
broker name
2018-10-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-30T00:00:00
dateart
2009-08-21T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.12
duryart
2018-10-29T00:00:00
endfollowup
['not applicable', '2018-05-14T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
20.9
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
female
host_sex
B1082
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CCATAATCCGTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-29T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.28069407
templateDNA_16SqPCR
19.27232412
templateDNA_16SqPCR_Cq
395731.7
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
7
visittotno
H09
well
no
zymo_DNA