MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-11-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246899
External Id
0.858502797
FEV1FVC
-0.995376132
FEV1FVCZ
1.24
FEV1_baseline
69.10276983
FEVpcpred
1.444375038
FVC
-2.009330659
FVCZ
74.28228166
FVCpcpred
15297
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
40140
RawReads_ASVpipeline
SRS10548944
SRA accession
BYC11I3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
13.5
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11I3
barcode
806rcbc210
barcode_806R
NCBI
broker name
248
cd4
2017-10-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-05-04T00:00:00
dateart
2016-05-03T00:00:00
datehiv
1.41
duryart
2019-02-18T00:00:00
endfollowup
['2019-09-03T00:00:00', '2019-09-03T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.3346956
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.9
host_age
19.845949
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.10276983
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3047
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CTCCTGAAAGTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-18T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:40:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.1278
templateDNA_16SqPCR
20.58
templateDNA_16SqPCR_Cq
180176.63
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-23T00:00:00
visit_date
8
visittotno
4.690196
vllog
49000
vload
35
weight
B02
well
-0.024155859
zbmiuk
-4.6729279
zhauk
-2.9950669
zwauk
no
zymo_DNA