MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-08-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246892
External Id
0.812748966
FEV1FVC
-1.461731749
FEV1FVCZ
1.53
FEV1_baseline
66.10838055
FEVpcpred
1.882500052
FVC
-2.027592347
FVCZ
73.78345772
FVCpcpred
16368
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
34565
RawReads_ASVpipeline
SRS10548931
SRA accession
BYC10VT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
9.34
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYC10VT3
barcode
806rcbc185
barcode_806R
NCBI
broker name
136
cd4
2017-07-24
collection_date
yes
cotrimoxazole
yes
cough_enrl
2009-12-15T00:00:00
dateart
2009-12-01T00:00:00
datehiv
SHI
drug_usage
7.61
duryart
2018-12-12T00:00:00
endfollowup
['2018-06-25T00:00:00', '2018-06-25T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-2.5536878
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.9
host_age
19.357195
host_body_mass_index
HIV-associated chronic lung disease
host_disease
66.10838055
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3028
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATGGACCGAACC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-12-12T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
SHI
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.726291101
templateDNA_16SqPCR
17.93454728
templateDNA_16SqPCR_Cq
1023949
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
yes
visit018
no
visit1218
2017-07-15T00:00:00
visit_date
7
visittotno
1.6532125
vllog
45
vload
42.4
weight
B11
well
-0.60213381
zbmiuk
-2.5608392
zhauk
-2.2163587
zwauk
no
zymo_DNA