MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-08-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248061
External Id
0.778947378
FEV1FVC
-1.593582856
FEV1FVCZ
1.85
FEV1_baseline
77.50473739
FEVpcpred
2.375
FVC
-0.956040474
FVCZ
88.14564138
FVCpcpred
22218
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:49Z
INSDC first public
2022-11-29T01:24:49Z
INSDC last update
public
INSDC status
40241
RawReads_ASVpipeline
SRS10620625
SRA accession
BSP0062
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.98
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0062
barcode
806rcbc305
barcode_806R
NCBI
broker name
650
cd4
2017-03-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2008-08-11T00:00:00
dateart
2008-08-05T00:00:00
datehiv
8.61
duryart
2018-08-08T00:00:00
endfollowup
['2018-02-28T00:00:00', '2018-02-28T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.659032
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.5
host_age
17.306652
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.50473739
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1059
host_subject_id
human respiratory
host_tissue_sampled
AGTTAGTGCGTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:09:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.180521352
templateDNA_16SqPCR
19.69
templateDNA_16SqPCR_Cq
254504.9181
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-03-20T00:00:00
visit_date
7
visittotno
2.178977
vllog
151
vload
39.2
weight
A02
well
-0.8898679
zbmiuk
-1.9290357
zhauk
-1.7095124
zwauk
no
zymo_DNA