MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-03-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246684
External Id
0.8767709
FEV1FVC
-0.492653451
FEV1FVCZ
2.049999952
FEV1_baseline
82.62597049
FEVpcpred
2.33812499
FVC
-1.138486756
FVCZ
85.11512596
FVCpcpred
16255
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
39598
RawReads_ASVpipeline
SRS10548245
SRA accession
BSP0589
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
10.47
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0589
barcode
806rcbc204
barcode_806R
NCBI
broker name
262
cd4
2019-01-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-09-15T00:00:00
dateart
2012-08-15T00:00:00
datehiv
5.36
duryart
2019-06-18T00:00:00
endfollowup
['NA', '2019-01-09T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.329354439
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.7
host_age
20.897608
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.62597049
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1161
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TAAAGTCACCCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:45:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.01415
templateDNA_16SqPCR
23.83
templateDNA_16SqPCR_Cq
19949.13
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-10T00:00:00
visit_date
7
visittotno
4.3096304
vllog
20400
vload
48.6
weight
D01
well
0.049980704
zbmiuk
-1.8138041
zhauk
-1.1136918
zwauk
no
zymo_DNA