MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-11-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250848
External Id
21064
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
41763
RawReads_ASVpipeline
SRS10620559
SRA accession
WRrepeat_BYE100T3
Submitter Id
AAR
WRrepeats
AAR
WRrepeats_BP
Not Adherent
adherence
no
adm
6.53
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYE100T3
barcode
806rcbc376
barcode_806R
NCBI
broker name
2018-07-18
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-05-15T00:00:00
dateart
2008-06-15T00:00:00
datehiv
3.79
duryart
2018-07-18T00:00:00
endfollowup
['not applicable', '2018-01-31T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
11.7
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3016
host_subject_id
human respiratory
host_tissue_sampled
CTATACCACGGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-18T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.003952858
templateDNA_16SqPCR
25.50501956
templateDNA_16SqPCR_Cq
5572.868342
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
7
visittotno
H10
well
no
zymo_DNA