MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-09-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248997
External Id
0.889692566
FEV1FVC
-0.349354445
FEV1FVCZ
1.230000019
FEV1_baseline
74.35076139
FEVpcpred
1.382500052
FVC
-1.898702939
FVCZ
76.04967105
FVCpcpred
19463
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
38972
RawReads_ASVpipeline
SRS10550407
SRA accession
BSP0648
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0648
barcode
806rcbc26
barcode_806R
NCBI
broker name
2019-03-01
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-07-01T00:00:00
dateart
2007-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.29
duryart
2019-03-01T00:00:00
endfollowup
['NA', '2018-09-14T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.948073632
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.4
host_age
14.607293
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.35076139
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1138
host_subject_id
human respiratory
host_tissue_sampled
ATGTGCACGACT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-01T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:12:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.023449456
templateDNA_16SqPCR
22.55230993
templateDNA_16SqPCR_Cq
33059.81199
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-03-01T00:00:00
visit_date
7
visittotno
25.8
weight
C03
well
-2.0882144
zbmiuk
-2.7398136
zhauk
-2.9725177
zwauk
no
zymo_DNA