MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108657
External Id
0.861402532
FEV1FVC
-0.409964902
FEV1FVCZ
1.950000048
FEV1_baseline
86.11868831
FEVpcpred
2.263750076
FVC
-0.907678408
FVCZ
88.74745186
FVCpcpred
12827
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
45973
RawReads_ASVpipeline
SRS10483918
SRA accession
BSP0556
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
5.43
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0556
barcode
806rcbc172
barcode_806R
NCBI
broker name
2018-11-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-11-15T00:00:00
dateart
2009-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
7.58
duryart
2018-11-02T00:00:00
endfollowup
['NA', '2018-05-21T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.030364555
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.3
host_age
20.380285
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.11868831
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1085
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TATGCACCAGTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.047057532
templateDNA_16SqPCR
22.04101202
templateDNA_16SqPCR_Cq
66343.25
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-11-02T00:00:00
visit_date
7
visittotno
3.230449
vllog
1700
vload
44.4
weight
E09
well
0.5939067
zbmiuk
-2.1121352
zhauk
-0.84252745
zwauk
no
zymo_DNA