MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-02-18T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248973
External Id
0.81909165
FEV1FVC
-1.510154424
FEV1FVCZ
1.330000043
FEV1_baseline
70.90956336
FEVpcpred
1.623749971
FVC
-1.580541321
FVCZ
79.65540379
FVCpcpred
19732
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
42395
RawReads_ASVpipeline
SRS10550446
SRA accession
BSP0580
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
8.49
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0580
barcode
806rcbc274
barcode_806R
NCBI
broker name
647
cd4
2019-01-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-08-15T00:00:00
dateart
2007-09-15T00:00:00
datehiv
5.48
duryart
2019-06-28T00:00:00
endfollowup
['NA', '2019-01-07T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.201983626
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.8
host_age
15.771704
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.90956336
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1172
host_subject_id
human respiratory
host_tissue_sampled
CACACAGCGTTA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.003329146
templateDNA_16SqPCR
25.43257788
templateDNA_16SqPCR_Cq
4693.539675
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-07T00:00:00
visit_date
7
visittotno
1.7558749
vllog
57
vload
29
weight
B10
well
-2.0982187
zbmiuk
-4.2143044
zhauk
-4.4805732
zwauk
no
zymo_DNA