MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-08-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246887
External Id
0.783384196
FEV1FVC
-1.542445662
FEV1FVCZ
2.086250067
FEV1_baseline
77.18131869
FEVpcpred
2.663125038
FVC
-0.991410469
FVCZ
87.67211797
FVCpcpred
5545
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
48669
RawReads_ASVpipeline
SRS10548919
SRA accession
BYC10AT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
12.51
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYC10AT3
barcode
806rcbc106
barcode_806R
NCBI
broker name
672
cd4
2017-02-09
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-02-08T00:00:00
dateart
2012-09-10T00:00:00
datehiv
4
duryart
2018-06-28T00:00:00
endfollowup
['2018-01-11T00:00:00', '2018-01-11T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.7037843
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.5
host_age
17.087444
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.18131869
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3010
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGACCTCCAAGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:55:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.004705
templateDNA_16SqPCR
25.46
templateDNA_16SqPCR_Cq
6633.26
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-02T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
40
weight
C01
well
-1.6593581
zbmiuk
-2.9697497
zhauk
-3.2162957
zwauk
no
zymo_DNA