MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-06-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248084
External Id
0.852300214
FEV1FVC
-0.679860635
FEV1FVCZ
1.75999999
FEV1_baseline
64.9426006
FEVpcpred
2.0650000569999998
FVC
-2.485171474
FVCZ
67.75338817
FVCpcpred
10629
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
24051
RawReads_ASVpipeline
SRS10620708
SRA accession
BSP0245
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.03
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0245
barcode
806rcbc303
barcode_806R
NCBI
broker name
156
cd4
2017-12-06
collection_date
yes
cotrimoxazole
no
cough_enrl
2005-06-15T00:00:00
dateart
COTRIMOXAZOLE
drug_usage
11.56
duryart
2018-05-23T00:00:00
endfollowup
['NA', '2017-12-06T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.633258258
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
22.215794
host_body_mass_index
HIV-associated chronic lung disease
host_disease
64.9426006
host_height
yes
host_hiv_stat
female
host_sex
B1041
host_subject_id
human respiratory
host_tissue_sampled
GACGAGTCAGTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-23T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.514633587
templateDNA_16SqPCR
18.18
templateDNA_16SqPCR_Cq
725547.298
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
no
visit012
no
visit018
yes
visit1218
2017-12-06T00:00:00
visit_date
7
visittotno
1.9242793
vllog
84
vload
55.6
weight
G01
well
0.21508756
zbmiuk
-0.8993212
zhauk
-0.30724537
zwauk
no
zymo_DNA