MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-08-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248921
External Id
0.791848675
FEV1FVC
-1.388953341
FEV1FVCZ
1.7
FEV1_baseline
80.11530578
FEVpcpred
2.146874905
FVC
-0.882627156
FVCZ
89.0751324
FVCpcpred
11172
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:41Z
INSDC last update
public
INSDC status
30043
RawReads_ASVpipeline
SRS10550418
SRA accession
BSP0277
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
9.38
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0277
barcode
806rcbc165
barcode_806R
NCBI
broker name
931
cd4
2018-01-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-12-20T00:00:00
dateart
2013-12-02T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.1
duryart
2019-06-18T00:00:00
endfollowup
['2019-01-10T00:00:00', '2019-01-10T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.4866406
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.4
host_age
15.885112
host_body_mass_index
HIV-associated chronic lung disease
host_disease
80.11530578
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1160
host_subject_id
human respiratory
host_tissue_sampled
TGGCATACGGCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:02:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.760363964
templateDNA_16SqPCR
17.59046253
templateDNA_16SqPCR_Cq
1071986.038
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-19T00:00:00
visit_date
7
visittotno
3.9122221
vllog
8170
vload
34
weight
F08
well
-1.3971512
zbmiuk
-1.4877998
zhauk
-1.7458693
zwauk
no
zymo_DNA