MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246670
External Id
0.756866746
FEV1FVC
-1.980691829
FEV1FVCZ
1.86
FEV1_baseline
74.08491665
FEVpcpred
2.457499981
FVC
-0.945464729
FVCZ
87.47366468
FVCpcpred
9695
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:33Z
INSDC first public
2022-11-29T01:24:33Z
INSDC last update
public
INSDC status
30058
RawReads_ASVpipeline
SRS10548173
SRA accession
BSP0518
Submitter Id
AF
WRrepeats
AF
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
7.59
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0518
barcode
806rcbc142
barcode_806R
NCBI
broker name
753
cd4
2018-09-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-09-15T00:00:00
dateart
2006-08-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.97
duryart
2019-08-06T00:00:00
endfollowup
['2019-08-06T00:00:00', '2019-08-06T00:00:00']
endtreatdate
2018-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.9637153
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.5
host_age
25.937485
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.08491665
host_height
yes
host_hiv_stat
female
host_sex
B1241
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTGATGCTATGC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-08-06T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:50:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.036117837
templateDNA_16SqPCR
22.43804236
templateDNA_16SqPCR_Cq
50920.11
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-08-28T00:00:00
visit_date
5
visittotno
0
vllog
0
vload
60.4
weight
G05
well
1.3042775
zbmiuk
-1.8268025
zhauk
0.27858588
zwauk
no
zymo_DNA