MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-09-08T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246895
External Id
0.779000803
FEV1FVC
-1.666977808
FEV1FVCZ
1.15
FEV1_baseline
75.35406193
FEVpcpred
1.476250052
FVC
-1.146535789
FVCZ
85.82972166
FVCpcpred
15221
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
41421
RawReads_ASVpipeline
SRS10548940
SRA accession
BYC119T3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.77
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC119T3
barcode
806rcbc118
barcode_806R
NCBI
broker name
613
cd4
2017-09-18
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-06-15T00:00:00
dateart
2013-06-15T00:00:00
datehiv
4.26
duryart
2019-02-04T00:00:00
endfollowup
['2019-08-20T00:00:00', '2019-08-20T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.9030006
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12
host_age
14.116107
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.35406193
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3041
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCAGGATAGATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-04T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['0.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:46:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.1709
templateDNA_16SqPCR
20.15
templateDNA_16SqPCR_Cq
240940.42
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-14T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
23.6
weight
G02
well
-2.2447364
zbmiuk
-2.6649523
zhauk
-3.365123
zwauk
no
zymo_DNA