MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-12-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246688
External Id
0.869009633
FEV1FVC
-0.56625217
FEV1FVCZ
1.190000057
FEV1_baseline
75.43065042
FEVpcpred
1.36937499
FVC
-1.750412344
FVCZ
78.03098
FVCpcpred
19113
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
42488
RawReads_ASVpipeline
SRS10548259
SRA accession
BSP0604
Submitter Id
AP
WRrepeats
AP
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
6.46
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0604
barcode
806rcbc143
barcode_806R
NCBI
broker name
1077
cd4
2019-01-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-06-03T00:00:00
dateart
2014-02-14T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.72
duryart
2019-07-09T00:00:00
endfollowup
['NA', '2019-01-22T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.868603433
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
11
host_age
15.710699
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.43065042
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1182
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CACATCTAACAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-07-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:42:00
sp05time
study ended
study_complt_stat
yes
tbtreat
0.388597457
templateDNA_16SqPCR
18.87302211
templateDNA_16SqPCR_Cq
547857.43
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-22T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
28
weight
H05
well
-0.92573506
zbmiuk
-1.6118658
zhauk
-1.4945714
zwauk
no
zymo_DNA