MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-05-26T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246611
External Id
0.900447704
FEV1FVC
0.2973591
FEV1FVCZ
2.64
FEV1_baseline
84.10724168
FEVpcpred
2.93187499
FVC
-1.441088473
FVCZ
82.0932535
FVCpcpred
17573
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
49447
RawReads_ASVpipeline
SRS10548228
SRA accession
BSP0223
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
3.85
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0223
barcode
806rcbc281
barcode_806R
NCBI
broker name
715
cd4
2017-10-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2004-04-02T00:00:00
dateart
2001-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
13.57
duryart
2019-03-14T00:00:00
endfollowup
['2018-09-27T00:00:00', '2018-09-27T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.2084079
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.4
host_age
17.972408
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.10724168
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1145
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AAGGTGTAAGGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:17:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.028279982
templateDNA_16SqPCR
22.70229905
templateDNA_16SqPCR_Cq
39870.05
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-10-24T00:00:00
visit_date
7
visittotno
3.9385197
vllog
8680
vload
47.4
weight
A11
well
-1.3750783
zbmiuk
-1.9965996
zhauk
-2.4814067
zwauk
no
zymo_DNA