MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-09-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246657
External Id
0.805400354
FEV1FVC
-1.41666737
FEV1FVCZ
2.162499905
FEV1_baseline
84.71384363
FEVpcpred
2.6849999430000002
FVC
-0.440890406
FVCZ
94.13489176
FVCpcpred
16894
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:33Z
INSDC first public
2022-11-29T01:24:33Z
INSDC last update
public
INSDC status
41501
RawReads_ASVpipeline
SRS10548166
SRA accession
BSP0465
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.89
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0465
barcode
806rcbc331
barcode_806R
NCBI
broker name
252
cd4
2018-07-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-07-22T00:00:00
dateart
2007-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
11.01
duryart
2019-06-27T00:00:00
endfollowup
['2019-06-26T00:00:00', '2019-06-26T00:00:00']
endtreatdate
2018-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.1701894
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.8
host_age
21.899437
host_body_mass_index
HIV-associated chronic lung disease
host_disease
84.71384363
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1227
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTGCTGGTCCTC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-06-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:05:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.040014129
templateDNA_16SqPCR
22.20917852
templateDNA_16SqPCR_Cq
56413.23
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
no
visit018
no
visit1218
2018-07-23T00:00:00
visit_date
5
visittotno
1.5910646
vllog
39
vload
51.6
weight
C05
well
0.16155589
zbmiuk
-1.677328
zhauk
-0.84198433
zwauk
no
zymo_DNA