MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-12-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246903
External Id
0.571209234
FEV1FVC
-3.530188453
FEV1FVCZ
1.86
FEV1_baseline
71.59970429
FEVpcpred
3.256249905
FVC
0.920476724
FVCZ
112.4010625
FVCpcpred
14824
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:37Z
INSDC first public
2022-11-29T01:24:37Z
INSDC last update
public
INSDC status
36436
RawReads_ASVpipeline
SRS10548884
SRA accession
BYC11ZT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11ZT3
barcode
806rcbc91
barcode_806R
NCBI
broker name
480
cd4
2018-01-24
collection_date
yes
cotrimoxazole
no
cough_enrl
2019-03-28T00:00:00
endfollowup
['2019-01-03T00:00:00', '2019-01-03T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
5
f24mrcscore
-2.1501684
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18
host_age
23.558792
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.59970429
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3065
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
ATCGGCGTTACA
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-03-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:30:00
sp05time
study ended
study_complt_stat
no
tbtreat
0.480336762
templateDNA_16SqPCR
18.65524381
templateDNA_16SqPCR_Cq
677194.51
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-20T00:00:00
visit_date
6
visittotno
5.5132174
vllog
326000
vload
56.6
weight
D11
well
0.77892709
zbmiuk
-1.4197149
zhauk
-0.12285809
zwauk
no
zymo_DNA