MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246921
External Id
0.744562465
FEV1FVC
-2.12418981
FEV1FVCZ
1.84
FEV1_baseline
69.77729784
FEVpcpred
2.4712500569999998
FVC
-1.239661893
FVCZ
83.66960731
FVCpcpred
17024
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
50758
RawReads_ASVpipeline
SRS10548923
SRA accession
BYD10IT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.97
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD10IT3
barcode
806rcbc120
barcode_806R
NCBI
broker name
337
cd4
2018-01-31
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-02-06T00:00:00
dateart
2007-01-10T00:00:00
datehiv
10.06
duryart
2018-11-12T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.282374637
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.9
host_age
21.148893
host_body_mass_index
HIV-associated chronic lung disease
host_disease
69.77729784
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3018
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCTTCCGCTACT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-12T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['NA', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:44:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.010142735
templateDNA_16SqPCR
24.34382626
templateDNA_16SqPCR_Cq
14299.56
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-31T00:00:00
visit_date
7
visittotno
4.5237465
vllog
33400
vload
51.6
weight
A03
well
-0.12060468
zbmiuk
-1.2302181
zhauk
-0.8442257
zwauk
no
zymo_DNA