MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-05-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248161
External Id
22304
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:52Z
INSDC first public
2022-11-29T01:24:52Z
INSDC last update
public
INSDC status
35770
RawReads_ASVpipeline
SRS10620740
SRA accession
WRrepeat_BSP0429
Submitter Id
U
WRrepeats
U
WRrepeats_WP
Adherent
adherence
no
adm
12.26
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0429
barcode
806rcbc79
barcode_806R
NCBI
broker name
2018-06-26
collection_date
yes
cotrimoxazole
yes
cough_enrl
2011-08-15T00:00:00
dateart
2009-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.48
duryart
2018-06-26T00:00:00
endfollowup
['not applicable', '2018-01-09T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
19.1
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
female
host_sex
B1050
host_subject_id
human respiratory
host_tissue_sampled
GGAAACCACCAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.342314162
templateDNA_16SqPCR
18.63081988
templateDNA_16SqPCR_Cq
482605.7247
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
7
visittotno
H09
well
no
zymo_DNA