MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-01-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246613
External Id
0.85751892
FEV1FVC
-0.525636104
FEV1FVCZ
1.628749967
FEV1_baseline
71.46042469
FEVpcpred
1.899374962
FVC
-2.07528536
FVCZ
74.3609581
FVCpcpred
5092
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:35Z
INSDC first public
2022-11-29T01:24:35Z
INSDC last update
public
INSDC status
16991
RawReads_ASVpipeline
SRS10548236
SRA accession
BSP0235
Submitter Id
K
WRrepeats
K
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
6.44
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0235
barcode
806rcbc276
barcode_806R
NCBI
broker name
788
cd4
2017-11-09
collection_date
no
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2005-05-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.4
duryart
2019-03-28T00:00:00
endfollowup
['2018-10-16T00:00:00', '2018-10-16T00:00:00']
endtreatdate
2017-11
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.0949869
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.8
host_age
15.460143
host_body_mass_index
HIV-associated chronic lung disease
host_disease
71.46042469
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1151
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TTACGAGACGGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.184548006
templateDNA_16SqPCR
19.89903872
templateDNA_16SqPCR_Cq
260181.83
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-06T00:00:00
visit_date
7
visittotno
1.763428
vllog
58
vload
33
weight
D10
well
-2.2343745
zbmiuk
-2.6817555
zhauk
-2.9656744
zwauk
no
zymo_DNA