MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-02-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249025
External Id
0.774834414
FEV1FVC
-1.846323669
FEV1FVCZ
2.339999914
FEV1_baseline
89.25661787
FEVpcpred
3.019999981
FVC
0.257042588
FVCZ
103.4294416
FVCpcpred
15388
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
30988
RawReads_ASVpipeline
SRS10550319
SRA accession
BSP0744
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0744
barcode
806rcbc237
barcode_806R
NCBI
broker name
2019-08-22
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-06-15T00:00:00
dateart
2007-06-01T00:00:00
datehiv
10.81
duryart
2019-08-22T00:00:00
endfollowup
['NA', '2019-03-07T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.826440087
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17.5
host_age
23.966635
host_body_mass_index
HIV-associated chronic lung disease
host_disease
89.25661787
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1200
host_subject_id
human respiratory
host_tissue_sampled
GCGTGTTAAACC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.004649233
templateDNA_16SqPCR
24.94223348
templateDNA_16SqPCR_Cq
6554.641455
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-08-22T00:00:00
visit_date
7
visittotno
58.4
weight
E05
well
0.95190984
zbmiuk
-1.2281593
zhauk
0.13567044
zwauk
no
zymo_DNA