MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-02-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248935
External Id
0.757575727
FEV1FVC
-2.088887169
FEV1FVCZ
2
FEV1_baseline
77.38478708
FEVpcpred
2.640000105
FVC
-0.601731799
FVCZ
92.10440685
FVCpcpred
16217
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:39Z
INSDC first public
2022-11-29T01:24:39Z
INSDC last update
public
INSDC status
33546
RawReads_ASVpipeline
SRS10550316
SRA accession
BSP0367
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
5.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0367
barcode
806rcbc221
barcode_806R
NCBI
broker name
551
cd4
2018-04-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-06-15T00:00:00
dateart
2007-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
10.81
duryart
2019-08-22T00:00:00
endfollowup
['2019-03-07T00:00:00', '2019-03-07T00:00:00']
endtreatdate
2018-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.7224404
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16.1
host_age
22.846811
host_body_mass_index
HIV-associated chronic lung disease
host_disease
77.38478708
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1200
host_subject_id
human respiratory
host_tissue_sampled
TGGAGCACGTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.00848
templateDNA_16SqPCR
24.05803949
templateDNA_16SqPCR_Cq
11948.7543
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-28T00:00:00
visit_date
7
visittotno
1.9395193
vllog
87
vload
55.6
weight
E03
well
0.79282326
zbmiuk
-1.2007258
zhauk
-0.026014855
zwauk
no
zymo_DNA