MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-10-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246630
External Id
0.861622377
FEV1FVC
-1.187518532
FEV1FVCZ
0.79
FEV1_baseline
63.61621739
FEVpcpred
0.916875005
FVC
-2.353149485
FVCZ
69.92585831
FVCpcpred
13792
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
38964
RawReads_ASVpipeline
SRS10548276
SRA accession
BSP0360
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
11.49
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0360
barcode
806rcbc369
barcode_806R
NCBI
broker name
508
cd4
2018-03-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-03T00:00:00
dateart
2014-02-11T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.98
duryart
2019-08-14T00:00:00
endfollowup
['2019-02-26T00:00:00', '2019-02-26T00:00:00']
endtreatdate
2018-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.7346363
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.4
host_age
16.394773
host_body_mass_index
HIV-associated chronic lung disease
host_disease
63.61621739
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1196
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TAATGGAGGAAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-08-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.068008024
templateDNA_16SqPCR
21.42804503
templateDNA_16SqPCR_Cq
95879.94
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-22T00:00:00
visit_date
7
visittotno
4.6866364
vllog
48600
vload
20.2
weight
A10
well
-1.8564818
zbmiuk
-8.4292431
zhauk
-8.4111643
zwauk
no
zymo_DNA