MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-02-18T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248928
External Id
0.870532161
FEV1FVC
-0.809946222
FEV1FVCZ
1.37
FEV1_baseline
81.19846641
FEVpcpred
1.573750019
FVC
-1.085348046
FVCZ
86.0243001
FVCpcpred
17186
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
33726
RawReads_ASVpipeline
SRS10550441
SRA accession
BSP0293
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
8.49
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0293
barcode
806rcbc266
barcode_806R
NCBI
broker name
631
cd4
2018-02-05
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-08-15T00:00:00
dateart
2007-09-15T00:00:00
datehiv
5.48
duryart
2019-06-28T00:00:00
endfollowup
['2019-01-07T00:00:00', '2019-01-07T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.4364535
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.9
host_age
14.891806
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.19846641
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1172
host_subject_id
human respiratory
host_tissue_sampled
GATAGAAAGCCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
R2
run_processing_batch
stored in primestore
samp_mat_process
['NA', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.005202775
templateDNA_16SqPCR
24.77656001
templateDNA_16SqPCR_Cq
7335.042629
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2018-02-01T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
25.4
weight
B09
well
-2.4218423
zbmiuk
-4.4058547
zhauk
-4.6008716
zwauk
no
zymo_DNA