MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2008-11-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246902
External Id
0.562691107
FEV1FVC
-3.722767735
FEV1FVCZ
1.15
FEV1_baseline
85.96727916
FEVpcpred
2.043750048
FVC
2.741896192
FVCZ
135.4281593
FVCpcpred
6622
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
36858
RawReads_ASVpipeline
SRS10548879
SRA accession
BYC11VT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
7.58
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11VT3
barcode
806rcbc201
barcode_806R
NCBI
broker name
845
cd4
2017-12-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-06-15T00:00:00
dateart
2016-06-15T00:00:00
datehiv
1.47
duryart
2019-04-24T00:00:00
endfollowup
['2018-11-05T00:00:00', '2018-11-05T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.0858105
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9
host_age
15.621063
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.96727916
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3061
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGTTTAGAGTCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-24T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.01788
templateDNA_16SqPCR
23.48
templateDNA_16SqPCR_Cq
25207.81
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
no
visit012
yes
visit018
no
visit1218
2017-11-22T00:00:00
visit_date
7
visittotno
2.9822712
vllog
960
vload
24.8
weight
A01
well
-0.26863945
zbmiuk
-1.2929018
zhauk
-0.9702031
zwauk
no
zymo_DNA