MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-10-07T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250769
External Id
0.866989629
FEV1FVC
-0.206535304
FEV1FVCZ
2.460624933
FEV1_baseline
76.34147864
FEVpcpred
2.83812499
FVC
-1.844368699
FVCZ
77.101773
FVCpcpred
27181
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
44806
RawReads_ASVpipeline
SRS10620452
SRA accession
BSP0263
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.36
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0263
barcode
806rcbc178
barcode_806R
NCBI
broker name
16
cd4
2018-01-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-02-15T00:00:00
dateart
2012-01-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.95
duryart
2018-06-14T00:00:00
endfollowup
['NA', '2017-12-21T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.809264405
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.2
host_age
16.670271
host_body_mass_index
HIV-associated chronic lung disease
host_disease
76.34147864
host_height
yes
host_hiv_stat
male
host_sex
B1048
host_subject_id
human respiratory
host_tissue_sampled
AGCAAACACCCG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:35:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.033784015
templateDNA_16SqPCR
22.38610072
templateDNA_16SqPCR_Cq
47629.81215
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-10T00:00:00
visit_date
7
visittotno
4.6201363
vllog
41700
vload
44.4
weight
C10
well
-2.4720287
zbmiuk
-2.0035052
zhauk
-3.4829628
zwauk
no
zymo_DNA