MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-08-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248899
External Id
0.842562454
FEV1FVC
-0.924061861
FEV1FVCZ
0.97
FEV1_baseline
83.78386418
FEVpcpred
1.151250005
FVC
-0.810251875
FVCZ
89.33972359
FVCpcpred
12354
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
23004
RawReads_ASVpipeline
SRS10550369
SRA accession
BSP0114
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.46
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0114
barcode
806rcbc180
barcode_806R
NCBI
broker name
614
cd4
2017-07-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-02-12T00:00:00
dateart
2012-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.4
duryart
2018-11-26T00:00:00
endfollowup
['2018-06-08T00:00:00', '2018-06-08T00:00:00']
endtreatdate
2017-07
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.1934216
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
7.8
host_age
16.241791
host_body_mass_index
HIV-associated chronic lung disease
host_disease
83.78386418
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1092
host_subject_id
human respiratory
host_tissue_sampled
GATTGGTTGCAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-26T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:00:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.131142371
templateDNA_16SqPCR
20.15076074
templateDNA_16SqPCR_Cq
184888.8133
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-07-05T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
23
weight
E10
well
0.33182955
zbmiuk
-1.4723196
zhauk
-0.67814708
zwauk
no
zymo_DNA