MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2009-04-30T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246961
External Id
0.945427216
FEV1FVC
1.153972026
FEV1FVCZ
1.57
FEV1_baseline
111.5210772
FEVpcpred
1.660624981
FVC
0.322933286
FVCZ
104.0801806
FVCpcpred
13491
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:36Z
INSDC first public
2022-11-29T01:24:36Z
INSDC last update
public
INSDC status
43832
RawReads_ASVpipeline
SRS10548871
SRA accession
BYE136T3
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
7.26
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE136T3
barcode
806rcbc221
barcode_806R
NCBI
broker name
2019-02-20
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-08-02T00:00:00
dateart
2015-05-15T00:00:00
datehiv
1.17
duryart
2019-02-20T00:00:00
endfollowup
['NA', '2018-09-05T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
0.922853683
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
9.8
host_age
15.136719
host_body_mass_index
HIV-associated chronic lung disease
host_disease
111.5210772
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3049
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGGAGCACGTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-20T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.0114
templateDNA_16SqPCR
24.0649065
templateDNA_16SqPCR_Cq
16020.34
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-02-20T00:00:00
visit_date
7
visittotno
24.8
weight
E03
well
-0.76237047
zbmiuk
-1.5419675
zhauk
-1.4992467
zwauk
no
zymo_DNA