MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-03-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250737
External Id
0.871684589
FEV1FVC
-0.379602096
FEV1FVCZ
1.52
FEV1_baseline
58.52193048
FEVpcpred
1.743749976
FVC
-3.126144709
FVCZ
59.77263766
FVCpcpred
21397
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
36086
RawReads_ASVpipeline
SRS10620456
SRA accession
BSP0056
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
yes
adm
14.72
ageyart
yes
all_3
no
antibiotic12m
2
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BSP0056
barcode
806rcbc134
barcode_806R
NCBI
broker name
366
cd4
2017-02-20
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-12-12T00:00:00
dateart
2011-07-28T00:00:00
datehiv
5.19
duryart
2018-07-09T00:00:00
endfollowup
['2018-01-22T00:00:00', '2018-01-22T00:00:00']
endtreatdate
2017-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-3.0933437
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
yes
hospitalised12m
Homo sapiens
host
19.9
host_age
20.202852
host_body_mass_index
HIV-associated chronic lung disease
host_disease
58.52193048
host_height
yes
host_hiv_stat
female
host_sex
B1053
host_subject_id
human respiratory
host_tissue_sampled
AATCTTGCTGCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-09T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
1
nadm
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
bacterial pneumonia, underlying pulmonary tb
reason_hospi
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:22:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.04337502
templateDNA_16SqPCR
22.02731371
templateDNA_16SqPCR_Cq
61151.52439
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-15T00:00:00
visit_date
7
visittotno
5.3944516
vllog
248000
vload
48.6
weight
G04
well
-0.60088176
zbmiuk
-1.4143015
zhauk
-1.3340132
zwauk
no
zymo_DNA