MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-08-19T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108614
External Id
0.840346203
FEV1FVC
-0.981611716
FEV1FVCZ
1.76
FEV1_baseline
78.12801395
FEVpcpred
2.094374895
FVC
-1.232375438
FVCZ
83.74015264
FVCpcpred
17183
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
52107
RawReads_ASVpipeline
SRS10484018
SRA accession
BSP0253
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
14.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0253
barcode
806rcbc334
barcode_806R
NCBI
broker name
285
cd4
2017-12-14
collection_date
yes
cotrimoxazole
yes
cough_enrl
2013-04-29T00:00:00
dateart
2010-05-05T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.71
duryart
2018-05-31T00:00:00
endfollowup
['NA', '2017-12-14T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.663781951
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
19.3
host_age
20.166468
host_body_mass_index
HIV-associated chronic lung disease
host_disease
78.12801395
host_height
yes
host_hiv_stat
female
host_sex
B1044
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CCATGGACACAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-05-31T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:41:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.542937932
templateDNA_16SqPCR
18.36861087
templateDNA_16SqPCR_Cq
765451.69
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2017-12-14T00:00:00
visit_date
7
visittotno
4.0334239
vllog
10800
vload
42.4
weight
F05
well
-0.55607986
zbmiuk
-3.0846505
zhauk
-2.4374776
zwauk
no
zymo_DNA