Y
BRrepeats
MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-08-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108707
External Id
20016
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:30Z
INSDC first public
2022-11-29T01:24:30Z
INSDC last update
public
INSDC status
47538
RawReads_ASVpipeline
SRS10483965
SRA accession
WRrepeat_BYD11FT3
Submitter Id
AAL
WRrepeats
AAL
WRrepeats_WP
Not Adherent
adherence
no
adm
4.81
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BYD11FT3
barcode
806rcbc340
barcode_806R
NCBI
broker name
2018-09-19
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-06-15T00:00:00
dateart
2007-06-15T00:00:00
datehiv
10.34
duryart
2018-09-19T00:00:00
endfollowup
['not applicable', '2018-09-19T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
16
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3055
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CGTCTGGTTCCT
index_sequence
sputum
isolation_source
12 mths
lastvisit
2018-09-19T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
0.0884
templateDNA_16SqPCR
21.04183179
templateDNA_16SqPCR_Cq
124628.5
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
5
visittotno
D06
well
no
zymo_DNA