MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2006-03-12T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246671
External Id
0.893450028
FEV1FVC
-0.097850977
FEV1FVCZ
1.850000024
FEV1_baseline
87.40408549
FEVpcpred
2.070625067
FVC
-0.966079331
FVCZ
87.66198281
FVCpcpred
14726
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
38687
RawReads_ASVpipeline
SRS10548221
SRA accession
BSP0533
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
5.3
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0533
barcode
806rcbc72
barcode_806R
NCBI
broker name
510
cd4
2018-09-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-06-28T00:00:00
dateart
2011-06-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.32
duryart
2019-03-12T00:00:00
endfollowup
['NA', '2018-09-25T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-0.96768912
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
12.5
host_age
16.756002
host_body_mass_index
HIV-associated chronic lung disease
host_disease
87.40408549
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1143
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GAACTAGTCACC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-03-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:20:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.45829959
templateDNA_16SqPCR
18.72337561
templateDNA_16SqPCR_Cq
646125.78
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-25T00:00:00
visit_date
7
visittotno
2.3747482
vllog
237
vload
37.2
weight
A09
well
-0.80415398
zbmiuk
-0.54095548
zhauk
-0.81326836
zwauk
no
zymo_DNA