MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-10-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250746
External Id
0.822995449
FEV1FVC
-1.31108775
FEV1FVCZ
2.04
FEV1_baseline
82.32571533
FEVpcpred
2.47874999
FVC
-0.729294964
FVCZ
90.46662268
FVCpcpred
12038
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
21812
RawReads_ASVpipeline
SRS10620476
SRA accession
BSP0106
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0106
barcode
806rcbc290
barcode_806R
NCBI
broker name
479
cd4
2017-06-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-07-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
2.95
duryart
2018-11-12T00:00:00
endfollowup
['2018-05-28T00:00:00', '2018-05-28T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.3519934
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.7
host_age
19.803192
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.32571533
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1088
host_subject_id
human respiratory
host_tissue_sampled
TACGGTATGTCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-12T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:10:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.116
templateDNA_16SqPCR
20.54430014
templateDNA_16SqPCR_Cq
162947.7796
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-06-20T00:00:00
visit_date
7
visittotno
5.0681858
vllog
117000
vload
46.6
weight
B12
well
-0.20306545
zbmiuk
-1.5776575
zhauk
-1.1890473
zwauk
no
zymo_DNA