MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-09-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250840
External Id
13214
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:46Z
INSDC first public
2022-11-29T01:24:46Z
INSDC last update
public
INSDC status
24200
RawReads_ASVpipeline
SRS10620502
SRA accession
WRrepeat_BSP0734
Submitter Id
AY
WRrepeats
AY
WRrepeats_BP
Adherent
adherence
no
adm
15.6
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0734
barcode
806rcbc103
barcode_806R
NCBI
broker name
2019-08-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-05-06T00:00:00
dateart
2007-04-17T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
4.32
duryart
2019-08-02T00:00:00
endfollowup
['not applicable', '2019-08-02T00:00:00']
endtreatdate
2018-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
20.8
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
female
host_sex
B1239
host_subject_id
human respiratory
host_tissue_sampled
TACTTCGCTCGC
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-08-02T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
0.016450527
templateDNA_16SqPCR
23.62655185
templateDNA_16SqPCR_Cq
23192.4925
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
5
visittotno
H12
well
no
zymo_DNA