MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-11-04T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246928
External Id
0.874251542
FEV1FVC
-0.670615026
FEV1FVCZ
1.46
FEV1_baseline
70.00734204
FEVpcpred
1.669999957
FVC
-2.080166549
FVCZ
73.26185221
FVCpcpred
19340
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
45478
RawReads_ASVpipeline
SRS10548945
SRA accession
BYD11AT3
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
13.5
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD11AT3
barcode
806rcbc218
barcode_806R
NCBI
broker name
248
cd4
2018-09-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2016-05-04T00:00:00
dateart
2016-05-03T00:00:00
datehiv
1.41
duryart
2019-02-18T00:00:00
endfollowup
['NA', '2019-09-03T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.268645457
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.8
host_age
19.733854
host_body_mass_index
HIV-associated chronic lung disease
host_disease
70.00734204
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3047
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CCTTGGCTATCC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-18T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:49:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.069854273
templateDNA_16SqPCR
21.35091396
templateDNA_16SqPCR_Cq
98482.84
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-09-03T00:00:00
visit_date
8
visittotno
0
vllog
0
vload
39.4
weight
B03
well
-0.25008607
zbmiuk
-3.5733135
zhauk
-2.5169561
zwauk
no
zymo_DNA