MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-06-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250846
External Id
32148
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:48Z
INSDC first public
2022-11-29T01:24:48Z
INSDC last update
public
INSDC status
50552
RawReads_ASVpipeline
SRS10620567
SRA accession
WRrepeat_BYD13IT3
Submitter Id
AAM
WRrepeats
AAM
WRrepeats_BP
Not Adherent
adherence
no
adm
14.34
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYD13IT3
barcode
806rcbc59
barcode_806R
NCBI
broker name
2019-05-03
collection_date
yes
cotrimoxazole
no
cough_enrl
2017-10-15T00:00:00
dateart
2017-10-12T00:00:00
datehiv
0.64
duryart
2019-05-03T00:00:00
endfollowup
['not applicable', '2019-04-30T00:00:00']
endtreatdate
2018-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
15.8
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3102
host_subject_id
human respiratory
host_tissue_sampled
GGTGTCTATTGT
index_sequence
sputum
isolation_source
12 mths
lastvisit
2019-05-03T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R3
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
0.017099096
templateDNA_16SqPCR
23.57080149
templateDNA_16SqPCR_Cq
24106.86555
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
5
visittotno
D07
well
no
zymo_DNA