MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-12-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250771
External Id
0.939242744
FEV1FVC
0.607530041
FEV1FVCZ
2
FEV1_baseline
82.71824215
FEVpcpred
2.129374981
FVC
-1.57399773
FVCZ
79.71307701
FVCpcpred
20970
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:47Z
INSDC first public
2022-11-29T01:24:47Z
INSDC last update
public
INSDC status
34967
RawReads_ASVpipeline
SRS10620536
SRA accession
BSP0281
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.97
ageyart
no
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0281
barcode
806rcbc229
barcode_806R
NCBI
broker name
2018-01-25
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-12-11T00:00:00
dateart
2006-07-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.77
duryart
2018-01-25T00:00:00
endfollowup
['NA', '2017-08-18T00:00:00']
endtreatdate
2016-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.322289753
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15
host_age
19.865627
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.71824215
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1014
host_subject_id
human respiratory
host_tissue_sampled
TTCCGTAGGGAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-25T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
yes
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:38:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.02918414
templateDNA_16SqPCR
22.57135282
templateDNA_16SqPCR_Cq
41144.75737
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
no
visit012
no
visit018
yes
visit1218
2018-01-25T00:00:00
visit_date
7
visittotno
46.2
weight
E04
well
-0.054205213
zbmiuk
-1.5835531
zhauk
-1.0294673
zwauk
no
zymo_DNA