MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2010-02-05T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248927
External Id
4
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
23
RawReads_ASVpipeline
SRS10550439
SRA accession
BSP0291
Submitter Id
Not Adherent
adherence
no
adm
1.36
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0291
barcode
806rcbc348
barcode_806R
NCBI
broker name
2018-02-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-06-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
6.64
duryart
2018-02-16T00:00:00
endfollowup
['not applicable', 'NA']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Zimbabwe: Harare
geo_loc_name
trial
group
Homo sapiens
host
7.9
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1171
host_subject_id
human respiratory
host_tissue_sampled
AACCTCGTCAAG
index_sequence
sputum
isolation_source
2 wks
lastvisit
2018-02-16T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
yes
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
LTFU
study_complt_stat
no
tbtreat
0.109
templateDNA_16SqPCR
20.48384906
templateDNA_16SqPCR_Cq
153502.8529
templateDNA_16SqPCR_copies
human sputum metagenome
title
Moved away
treatstopreason
Azithromycin
trial_arm
Week 0
visit
1
visittotno
D07
well
no
zymo_DNA