MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-05-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248172
External Id
21293
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
39826
RawReads_ASVpipeline
SRS10620685
SRA accession
WRrepeat_BYE11KT3
Submitter Id
AAT
WRrepeats
AAT
WRrepeats_WP
Adherent
adherence
yes
adm
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYE11KT3
barcode
806rcbc199
barcode_806R
NCBI
broker name
2019-04-29
collection_date
yes
cotrimoxazole
no
cough_enrl
2019-04-29T00:00:00
endfollowup
['not applicable', '2018-11-07T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
16.9
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3064
host_subject_id
human respiratory
host_tissue_sampled
CAGCATGTGTTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-04-29T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
1
nadm
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.358240813
templateDNA_16SqPCR
18.68679567
templateDNA_16SqPCR_Cq
505059.6405
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 72
visit
7
visittotno
H12
well
no
zymo_DNA