MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-09-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248170
External Id
12396
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
36299
RawReads_ASVpipeline
SRS10620692
SRA accession
WRrepeat_BYC12XT3
Submitter Id
AAH
WRrepeats
AAH
WRrepeats_WP
Adherent
adherence
no
adm
10.78
ageyart
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC12XT3
barcode
806rcbc376
barcode_806R
NCBI
broker name
2018-03-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-06-15T00:00:00
dateart
2014-06-15T00:00:00
datehiv
3.7
duryart
2019-05-20T00:00:00
endfollowup
['not applicable', '2019-02-25T00:00:00']
endtreatdate
2018-02
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
14.5
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
student
host_occupation
male
host_sex
B3083
host_subject_id
human respiratory
host_tissue_sampled
CTATACCACGGA
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-05-20T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
study ended
study_complt_stat
no
tbtreat
2.9e-06
templateDNA_16SqPCR
35.97400178
templateDNA_16SqPCR_Cq
4.087784858
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
6
visittotno
H10
well
no
zymo_DNA