MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-11-26T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249122
External Id
0.842105284
FEV1FVC
-1.179192698
FEV1FVCZ
1.02
FEV1_baseline
52.8432292
FEVpcpred
1.211249948
FVC
-3.383012324
FVCZ
57.58890556
FVCpcpred
16939
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:44Z
INSDC first public
2022-11-29T01:24:44Z
INSDC last update
public
INSDC status
32220
RawReads_ASVpipeline
SRS10550514
SRA accession
BYC113T3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
12.78
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC113T3
barcode
806rcbc219
barcode_806R
NCBI
broker name
521
cd4
2017-08-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2015-09-07T00:00:00
dateart
2012-03-05T00:00:00
datehiv
1.92
duryart
2019-01-07T00:00:00
endfollowup
['2018-07-12T00:00:00', '2018-07-12T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
3
f24mrcscore
-3.503288
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.7
host_age
18.273472
host_body_mass_index
HIV-associated chronic lung disease
host_disease
52.8432292
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3035
host_subject_id
human respiratory
host_tissue_sampled
CGTAACCAACCA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-07T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.26763579
templateDNA_16SqPCR
18.98228355
templateDNA_16SqPCR_Cq
377321.7091
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-08-07T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
34.8
weight
C03
well
-0.65578979
zbmiuk
-3.7442577
zhauk
-2.9013381
zwauk
no
zymo_DNA