MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-10-22T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248169
External Id
20309
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
40642
RawReads_ASVpipeline
SRS10620686
SRA accession
WRrepeat_BYC103T3
Submitter Id
AAB
WRrepeats
AAB
WRrepeats_WP
Not Adherent
adherence
no
adm
7.65
ageyart
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
no
attendschool
BYC103T3
barcode
806rcbc342
barcode_806R
NCBI
broker name
2016-10-31
collection_date
no
cotrimoxazole
yes
cough_enrl
2005-06-15T00:00:00
dateart
11.38
duryart
2018-03-28T00:00:00
endfollowup
['not applicable', '2017-10-02T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
Malawi: Blantyre
geo_loc_name
trial
group
Homo sapiens
host
19
host_age
HIV-associated chronic lung disease
host_disease
yes
host_hiv_stat
male
host_sex
B3004
host_subject_id
human respiratory
host_tissue_sampled
CGGACGTTCATA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['not applicable', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
sequencing_control
sample_type
expectorated
sampling_induced_expectorated
WRrepeat
sequencing_control_details
yes
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.054997596
templateDNA_16SqPCR
21.48818431
templateDNA_16SqPCR_Cq
77537.41414
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
7
visittotno
F06
well
no
zymo_DNA