MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1997-08-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248115
External Id
0.661996488
FEV1FVC
-2.802719577
FEV1FVCZ
1.889999986
FEV1_baseline
65.30659949
FEVpcpred
2.855000019
FVC
-1.070982001
FVCZ
86.63543908
FVCpcpred
23619
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:51Z
INSDC first public
2022-11-29T01:24:51Z
INSDC last update
public
INSDC status
52915
RawReads_ASVpipeline
SRS10620720
SRA accession
BSP0420
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
10.11
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0420
barcode
806rcbc334
barcode_806R
NCBI
broker name
2018-06-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-09-12T00:00:00
dateart
2007-08-31T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
9.37
duryart
2018-06-14T00:00:00
endfollowup
['NA', '2018-01-26T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.673968095
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
20.8
host_age
19.143194
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.30659949
host_height
yes
host_hiv_stat
male
host_sex
B1047
host_subject_id
human respiratory
host_tissue_sampled
CCATGGACACAG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1.5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:30:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.000974739
templateDNA_16SqPCR
27.418793
templateDNA_16SqPCR_Cq
1374.219538
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-06-14T00:00:00
visit_date
7
visittotno
45.4
weight
F05
well
-1.4944408
zbmiuk
-3.3914537
zhauk
-3.9884999
zwauk
no
zymo_DNA