MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1998-10-29T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248911
External Id
0.967278543
FEV1FVC
1.622835476
FEV1FVCZ
3.03
FEV1_baseline
85.25183503
FEVpcpred
3.132499933
FVC
-1.900688708
FVCZ
76.39719439
FVCpcpred
27002
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:41Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
64617
RawReads_ASVpipeline
SRS10550389
SRA accession
BSP0200
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
15.81
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0200
barcode
806rcbc356
barcode_806R
NCBI
broker name
488
cd4
2017-10-02
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-08-21T00:00:00
dateart
2012-08-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.12
duryart
2019-02-18T00:00:00
endfollowup
['2018-09-03T00:00:00', '2018-09-03T00:00:00']
endtreatdate
2017-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.1442238
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.9
host_age
18.291409
host_body_mass_index
HIV-associated chronic lung disease
host_disease
85.25183503
host_height
yes
host_hiv_stat
male
host_sex
B1130
host_subject_id
human respiratory
host_tissue_sampled
CTGGTTAATCTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-02-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:49:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
1.713141472
templateDNA_16SqPCR
16.43121082
templateDNA_16SqPCR_Cq
2415242.997
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-09-27T00:00:00
visit_date
7
visittotno
4.1271048
vllog
13400
vload
52.8
weight
D08
well
-1.5722846
zbmiuk
-1.0576496
zhauk
-2.1094964
zwauk
no
zymo_DNA