MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-12-27T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250788
External Id
0.850301756
FEV1FVC
-0.478955193
FEV1FVCZ
2.730000019
FEV1_baseline
86.65652767
FEVpcpred
3.210624933
FVC
-0.851458014
FVCZ
89.38987203
FVCpcpred
12144
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:45Z
INSDC first public
2022-11-29T01:24:45Z
INSDC last update
public
INSDC status
21490
RawReads_ASVpipeline
SRS10620474
SRA accession
BSP0396
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
13.54
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0396
barcode
806rcbc265
barcode_806R
NCBI
broker name
318
cd4
2018-05-16
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-07-11T00:00:00
dateart
2013-07-02T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.93
duryart
2018-10-31T00:00:00
endfollowup
['NA', '2018-05-16T00:00:00']
endtreatdate
2017-06
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.030045541
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.3
host_age
18.579683
host_body_mass_index
HIV-associated chronic lung disease
host_disease
86.65652767
host_height
yes
host_hiv_stat
male
host_sex
B1083
host_subject_id
human respiratory
host_tissue_sampled
TCCAGGCTTAAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-31T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:53:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.009627217
templateDNA_16SqPCR
24.20472521
templateDNA_16SqPCR_Cq
13572.76579
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-16T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
48.4
weight
A09
well
-1.2747231
zbmiuk
-2.268328
zhauk
-2.73088
zwauk
no
zymo_DNA