MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-01-02T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248981
External Id
0.807339417
FEV1FVC
-1.578071251
FEV1FVCZ
1.539999962
FEV1_baseline
74.23139068
FEVpcpred
1.907500029
FVC
-1.269963138
FVCZ
83.67644721
FVCpcpred
17997
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:40Z
INSDC first public
2022-11-29T01:24:40Z
INSDC last update
public
INSDC status
39127
RawReads_ASVpipeline
SRS10550362
SRA accession
BSP0596
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
9.32
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0596
barcode
806rcbc332
barcode_806R
NCBI
broker name
2019-01-14
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-04-28T00:00:00
dateart
2007-12-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
3.33
duryart
2019-01-14T00:00:00
endfollowup
['NA', '2018-08-06T00:00:00']
endtreatdate
2017-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.956423863
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14
host_age
17.796314
host_body_mass_index
HIV-associated chronic lung disease
host_disease
74.23139068
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1106
host_subject_id
human respiratory
host_tissue_sampled
CGACATGCTATT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
11:15:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.040585538
templateDNA_16SqPCR
21.93504983
templateDNA_16SqPCR_Cq
57218.82114
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-14T00:00:00
visit_date
7
visittotno
36.8
weight
D05
well
-0.71384305
zbmiuk
-2.4369342
zhauk
-2.0163329
zwauk
no
zymo_DNA