MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2001-04-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108634
External Id
0.814663976
FEV1FVC
-1.322013606
FEV1FVCZ
1.75
FEV1_baseline
61.90927435
FEVpcpred
2.148124933
FVC
-2.489955938
FVCZ
67.99348697
FVCpcpred
14191
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:29Z
INSDC first public
2022-11-29T01:24:29Z
INSDC last update
public
INSDC status
43860
RawReads_ASVpipeline
SRS10483908
SRA accession
BSP0391
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
8.17
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0391
barcode
806rcbc101
barcode_806R
NCBI
broker name
461
cd4
2018-05-02
collection_date
no
cotrimoxazole
no
cough_enrl
2009-06-16T00:00:00
dateart
2007-10-12T00:00:00
datehiv
7.96
duryart
2018-10-17T00:00:00
endfollowup
['NA', '2018-05-02T00:00:00']
endtreatdate
2017-05
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.857825126
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
17
host_age
24.157904
host_body_mass_index
HIV-associated chronic lung disease
host_disease
61.90927435
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1079
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
AACACAAGGAGT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-10-17T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:46:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.057155817
templateDNA_16SqPCR
21.74338618
templateDNA_16SqPCR_Cq
80580.14
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-05-02T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
63.4
weight
F12
well
1.0586799
zbmiuk
-0.2494929
zhauk
0.7396751
zwauk
no
zymo_DNA