MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-03-03T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246691
External Id
0.858340277
FEV1FVC
-0.558815128
FEV1FVCZ
1.919999957
FEV1_baseline
79.24797976
FEVpcpred
2.2368750569999998
FVC
-1.3913822
FVCZ
82.73622667
FVCpcpred
15829
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
41231
RawReads_ASVpipeline
SRS10548203
SRA accession
BSP0613
Submitter Id
no
acut_exac12m
Not Adherent
adherence
no
adm
8.57
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0613
barcode
806rcbc24
barcode_806R
NCBI
broker name
2019-01-28
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-09-28T00:00:00
dateart
2008-03-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.94
duryart
2019-01-28T00:00:00
endfollowup
['NA', '2018-08-13T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.540741987
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.9
host_age
17.006607
host_body_mass_index
HIV-associated chronic lung disease
host_disease
79.24797976
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1109
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCGATATATCGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-28T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:55:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.179615415
templateDNA_16SqPCR
20.08226612
templateDNA_16SqPCR_Cq
253227.7
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-01-28T00:00:00
visit_date
7
visittotno
4.9576073
vllog
90700
vload
37
weight
A03
well
-1.5138605
zbmiuk
-3.3381703
zhauk
-3.2010677
zwauk
no
zymo_DNA