MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-12-25T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108585
External Id
0.632357149
FEV1FVC
-3.178195252
FEV1FVCZ
1.39
FEV1_baseline
64.68830161
FEVpcpred
2.198124886
FVC
-0.604280418
FVCZ
92.21479253
FVCpcpred
25711
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
54834
RawReads_ASVpipeline
SRS10483884
SRA accession
BSP0059
Submitter Id
yes
acut_exac12m
Adherent
adherence
no
adm
9.5
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0059
barcode
806rcbc322
barcode_806R
NCBI
broker name
1362
cd4
2017-03-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2013-06-25T00:00:00
dateart
2012-04-05T00:00:00
datehiv
3.71
duryart
2018-07-27T00:00:00
endfollowup
['2018-02-16T00:00:00', '2018-02-16T00:00:00']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.6564991
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.2
host_age
15.957246
host_body_mass_index
HIV-associated chronic lung disease
host_disease
64.68830161
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1056
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CATATCGCAGTT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-07-27T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:39:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.372803744
templateDNA_16SqPCR
18.92227867
templateDNA_16SqPCR_Cq
525590.94
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-28T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
35
weight
B04
well
-1.4657197
zbmiuk
-1.1978892
zhauk
-1.7038066
zwauk
no
zymo_DNA