MIGS/MIMS/MIMARKS.host-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2005-05-01T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249012
External Id
0.890570132
FEV1FVC
0.234410524
FEV1FVCZ
2.0599999430000002
FEV1_baseline
81.4036299
FEVpcpred
2.313124895
FVC
-1.613333043
FVCZ
80.05960436
FVCpcpred
17838
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:42Z
INSDC first public
2022-11-29T01:24:42Z
INSDC last update
public
INSDC status
35504
RawReads_ASVpipeline
SRS10550429
SRA accession
BSP0695
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
7.62
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0695
barcode
806rcbc238
barcode_806R
NCBI
broker name
2019-06-18
collection_date
yes
cotrimoxazole
no
cough_enrl
2012-12-12T00:00:00
dateart
2012-12-08T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.13
duryart
2019-06-18T00:00:00
endfollowup
['NA', '2019-01-11T00:00:00']
endtreatdate
2018-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.378904271
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
14.1
host_age
17.564589
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.4036299
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1164
host_subject_id
human respiratory
host_tissue_sampled
CTCCTACTGTCT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-06-18T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.04739305
templateDNA_16SqPCR
21.52668161
templateDNA_16SqPCR_Cq
66816.27482
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2019-06-18T00:00:00
visit_date
7
visittotno
42.8
weight
F05
well
-0.59449857
zbmiuk
-0.86771131
zhauk
-0.86491716
zwauk
no
zymo_DNA