MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2000-11-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108578
External Id
0.741258763
FEV1FVC
-1.994340824
FEV1FVCZ
1.59
FEV1_baseline
52.96980637
FEVpcpred
2.144999981
FVC
-3.008820798
FVCZ
62.89744375
FVCpcpred
14787
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
40104
RawReads_ASVpipeline
SRS10484008
SRA accession
BSP0040
Submitter Id
D
WRrepeats
D
WRrepeats_BP
yes
acut_exac12m
Not Adherent
adherence
no
adm
8.2
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0040
barcode
806rcbc220
barcode_806R
NCBI
broker name
248
cd4
2016-12-02
collection_date
yes
cotrimoxazole
yes
cough_enrl
2009-01-27T00:00:00
dateart
2008-12-12T00:00:00
datehiv
7.85
duryart
2018-04-24T00:00:00
endfollowup
['2017-11-03T00:00:00', '2017-11-03T00:00:00']
endtreatdate
2016-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-3.4245245
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
16
host_age
17.049513
host_body_mass_index
HIV-associated chronic lung disease
host_disease
52.96980637
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1038
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
CATTTGGACGAC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-04-24T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
R1
run_processing_batch
stored in primestore
samp_mat_process
['NA', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
completed 18 months
study_complt_stat
no
tbtreat
0.324030798
templateDNA_16SqPCR
19.05775826
templateDNA_16SqPCR_Cq
456829.24
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-12-01T00:00:00
visit_date
7
visittotno
4.2253094
vllog
16800
vload
44.8
weight
D03
well
-1.5325589
zbmiuk
-1.5083362
zhauk
-1.9860432
zwauk
no
zymo_DNA