MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246889
External Id
0.764179132
FEV1FVC
-1.953900133
FEV1FVCZ
1.76
FEV1_baseline
67.53724162
FEVpcpred
2.303124905
FVC
-1.587509873
FVCZ
79.25662863
FVCpcpred
19298
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:38Z
INSDC first public
2022-11-29T01:24:38Z
INSDC last update
public
INSDC status
49917
RawReads_ASVpipeline
SRS10548922
SRA accession
BYC10IT3
Submitter Id
AAD
WRrepeats
AAD
WRrepeats_WP
no
acut_exac12m
Adherent
adherence
no
adm
7.97
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC10IT3
barcode
806rcbc112
barcode_806R
NCBI
broker name
571
cd4
2017-02-27
collection_date
yes
cotrimoxazole
no
cough_enrl
2007-02-06T00:00:00
dateart
2007-01-10T00:00:00
datehiv
10.06
duryart
2018-11-12T00:00:00
endfollowup
['NA', 'NA']
endtreatdate
2017-03
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-2.4482775
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18
host_age
23.586456
host_body_mass_index
HIV-associated chronic lung disease
host_disease
67.53724162
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3018
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TCTGTTGCTCTC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-11-12T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:09:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.01846
templateDNA_16SqPCR
23.44
templateDNA_16SqPCR_Cq
26025.51
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-02-18T00:00:00
visit_date
7
visittotno
3.5465426
vllog
3520
vload
57.4
weight
A02
well
0.7928282
zbmiuk
-1.2530532
zhauk
-0.019790869
zwauk
no
zymo_DNA