MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2004-06-15T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22249127
External Id
0.803720933
FEV1FVC
-1.614612833
FEV1FVCZ
1.62
FEV1_baseline
81.8128941
FEVpcpred
2.015625
FVC
-0.581058221
FVCZ
92.49805504
FVCpcpred
15372
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:43Z
INSDC first public
2022-11-29T01:24:43Z
INSDC last update
public
INSDC status
35448
RawReads_ASVpipeline
SRS10550473
SRA accession
BYC11TT3
Submitter Id
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
no
acut_exac12m
Not Adherent
adherence
no
adm
6.08
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BYC11TT3
barcode
806rcbc19
barcode_806R
NCBI
broker name
648
cd4
2017-12-04
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-07-15T00:00:00
dateart
2010-06-15T00:00:00
datehiv
7.39
duryart
2019-01-28T00:00:00
endfollowup
['2018-11-05T00:00:00', '2018-11-05T00:00:00']
endtreatdate
2017-12
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
2
f24mrcscore
-1.3902755
fev1z
Malawi: Blantyre
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.4
host_age
15.473121
host_body_mass_index
HIV-associated chronic lung disease
host_disease
81.8128941
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B3059
host_subject_id
human respiratory
host_tissue_sampled
CAGGCGTATTGG
index_sequence
sputum
isolation_source
15 mths
lastvisit
2019-01-28T00:00:00
lastvisitdate
15.77 S 35.02 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['5', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:05:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.077661984
templateDNA_16SqPCR
20.9
templateDNA_16SqPCR_Cq
109490.4102
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2017-11-25T00:00:00
visit_date
6
visittotno
4.8500333
vllog
70800
vload
31.2
weight
D02
well
-1.8557723
zbmiuk
-2.2979777
zhauk
-2.6674321
zwauk
no
zymo_DNA