MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2003-03-14T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22248048
External Id
0.782518236
FEV1FVC
-1.729397251
FEV1FVCZ
0.94
FEV1_baseline
57.16818239
FEVpcpred
1.201249957
FVC
-2.773750915
FVCZ
65.90447512
FVCpcpred
10135
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:50Z
INSDC first public
2022-11-29T01:24:50Z
INSDC last update
public
INSDC status
25078
RawReads_ASVpipeline
SRS10620665
SRA accession
BSP0033
Submitter Id
Not abnormal
abnhr
Abnormal RR
abnrr
Not abnormal
abnsat
no
acut_exac12m
Adherent
adherence
no
adm
3.26
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0033
barcode
806rcbc110
barcode_806R
NCBI
broker name
200
cd4
2016-10-26
collection_date
yes
cotrimoxazole
no
cough_enrl
2006-06-15T00:00:00
dateart
2006-04-15T00:00:00
datehiv
10.37
duryart
2018-03-14T00:00:00
endfollowup
['2017-09-27T00:00:00', '2017-09-27T00:00:00']
endtreatdate
2016-10
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-3.1450574
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
13.6
host_age
15.242813
host_body_mass_index
HIV-associated chronic lung disease
host_disease
57.16818239
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1031
host_subject_id
human respiratory
host_tissue_sampled
AATGGAGCATGA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-03-14T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P2
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
no
rs14antib
R2
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:15:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.448405511
templateDNA_16SqPCR
18.38
templateDNA_16SqPCR_Cq
632176.786
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 0
visit
yes
visit012
yes
visit018
yes
visit1218
2016-10-17T00:00:00
visit_date
7
visittotno
5.2718415
vllog
187000
vload
25.8
weight
G01
well
-1.9221766
zbmiuk
-3.5901043
zhauk
-3.6828704
zwauk
no
zymo_DNA