MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2007-10-08T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22246661
External Id
0.746996253
FEV1FVC
-1.95189124
FEV1FVCZ
1.360000014
FEV1_baseline
82.01380566
FEVpcpred
1.820624948
FVC
-0.340733042
FVCZ
95.75546
FVCpcpred
1473
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:34Z
INSDC first public
2022-11-29T01:24:34Z
INSDC last update
public
INSDC status
25352
RawReads_ASVpipeline
SRS10548207
SRA accession
BSP0477
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
1.69
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0477
barcode
806rcbc208
barcode_806R
NCBI
broker name
534
cd4
2018-08-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2009-06-15T00:00:00
dateart
2008-02-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
8.22
duryart
2019-01-22T00:00:00
endfollowup
['NA', '2018-08-07T00:00:00']
endtreatdate
2017-09
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.427813778
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
10.8
host_age
14.168982
host_body_mass_index
HIV-associated chronic lung disease
host_disease
82.01380566
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1111
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
TGCGGCATCGAA
index_sequence
sputum
isolation_source
18 mths
lastvisit
2019-01-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P3
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:50:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.2216
templateDNA_16SqPCR
19.76
templateDNA_16SqPCR_Cq
312418.94
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-08-07T00:00:00
visit_date
7
visittotno
1.5910646
vllog
39
vload
26.4
weight
H01
well
-1.792025
zbmiuk
-0.92424023
zhauk
-1.7159653
zwauk
no
zymo_DNA