MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-08-17T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108625
External Id
0.759493687
FEV1FVC
-1.911113494
FEV1FVCZ
1.799999952
FEV1_baseline
75.93826378
FEVpcpred
2.369999886
FVC
-0.840931398
FVCZ
89.55107514
FVCpcpred
8454
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:28Z
INSDC first public
2022-11-29T01:24:28Z
INSDC last update
public
INSDC status
34532
RawReads_ASVpipeline
SRS10483892
SRA accession
BSP0335
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
12.16
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
yes
attendschool
BSP0335
barcode
806rcbc21
barcode_806R
NCBI
broker name
949
cd4
2018-03-07
collection_date
yes
cotrimoxazole
no
cough_enrl
2014-10-14T00:00:00
dateart
2011-06-15T00:00:00
datehiv
CLOXACILLIN/COTRIMOXAZOLE
drug_usage
2.48
duryart
2018-08-22T00:00:00
endfollowup
['NA', '2018-03-07T00:00:00']
endtreatdate
2017-04
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-1.776590184
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.5
host_age
17.955481
host_body_mass_index
HIV-associated chronic lung disease
host_disease
75.93826378
host_height
yes
host_hiv_stat
student
host_occupation
male
host_sex
B1062
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GCTGATGAGCTG
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-08-22T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P1
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
CLOXACILLIN/COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
09:39:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
1.694
templateDNA_16SqPCR
16.76
templateDNA_16SqPCR_Cq
2388256.72
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-03-07T00:00:00
visit_date
7
visittotno
1.9444827
vllog
88
vload
38.8
weight
F02
well
-0.83576143
zbmiuk
-3.143482
zhauk
-2.5392165
zwauk
no
zymo_DNA