MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
2002-04-10T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22250768
External Id
0.774477466
FEV1FVC
-1.974743514
FEV1FVCZ
1.320000052
FEV1_baseline
59.90611132
FEVpcpred
1.704375029
FVC
-2.302384923
FVCZ
70.50813534
FVCpcpred
17135
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:47Z
INSDC first public
2022-11-29T01:24:47Z
INSDC last update
public
INSDC status
30245
RawReads_ASVpipeline
SRS10620524
SRA accession
BSP0259
Submitter Id
L
WRrepeats
L
WRrepeats_BP
Not abnormal
abnhr
Not abnormal
abnrr
Not abnormal
abnsat
yes
acut_exac12m
Adherent
adherence
no
adm
8.18
ageyart
yes
all_3
no
antibiotic12m
1
any3_reasons
no
artdrug1stline
yes
artdrug2ndline
ATV/LPV/PI
artreg
yes
attendschool
BSP0259
barcode
806rcbc346
barcode_806R
NCBI
broker name
2018-01-08
collection_date
yes
cotrimoxazole
no
cough_enrl
2010-06-15T00:00:00
dateart
2009-01-01T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
6.15
duryart
2018-01-08T00:00:00
endfollowup
['NA', '2017-07-12T00:00:00']
endtreatdate
2016-08
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-3.002089027
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
15.7
host_age
20.233675
host_body_mass_index
HIV-associated chronic lung disease
host_disease
59.90611132
host_height
yes
host_hiv_stat
student
host_occupation
female
host_sex
B1007
host_subject_id
human respiratory
host_tissue_sampled
TCGAATCACAGC
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-01-08T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R3
run_processing_batch
stored in primestore
samp_mat_process
['1', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
10:35:00
sp05time
completed 18 months
study_complt_stat
yes
tbtreat
0.038128846
templateDNA_16SqPCR
22.18220029
templateDNA_16SqPCR_Cq
53755.29746
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Azithromycin
trial_arm
Week 72
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-08T00:00:00
visit_date
7
visittotno
2.5502284
vllog
355
vload
42.6
weight
B07
well
-0.034623187
zbmiuk
-2.9376385
zhauk
-1.8727065
zwauk
no
zymo_DNA