MIGS/MIMS/MIMARKS.human-associated
BioSampleModel
MIMARKS.survey
BioSampleModel
1999-02-20T00:00:00
DOB
2022-11-29
ENA-FIRST-PUBLIC
2022-11-29
ENA-LAST-UPDATE
SAMN22108616
External Id
0.874999972
FEV1FVC
-0.532681686
FEV1FVCZ
1.399999976
FEV1_baseline
65.97387315
FEVpcpred
1.600000024
FVC
-2.445010705
FVCZ
68.32134718
FVCpcpred
15178
FinalReads_ASVpipeline
pda|214583989
INSDC center alias
pda|214583989
INSDC center name
2022-11-29T01:24:32Z
INSDC first public
2022-11-29T01:24:32Z
INSDC last update
public
INSDC status
39548
RawReads_ASVpipeline
SRS10484021
SRA accession
BSP0262
Submitter Id
no
acut_exac12m
Adherent
adherence
no
adm
12.31
ageyart
yes
all_3
no
antibiotic12m
0
any3_reasons
yes
artdrug1stline
no
artdrug2ndline
EFV/NVP
artreg
no
attendschool
BSP0262
barcode
806rcbc378
barcode_806R
NCBI
broker name
735
cd4
2018-01-10
collection_date
yes
cotrimoxazole
no
cough_enrl
2011-06-15T00:00:00
dateart
2011-06-15T00:00:00
datehiv
COTRIMOXAZOLE
drug_usage
5.6
duryart
2018-06-06T00:00:00
endfollowup
['NA', '2018-01-10T00:00:00']
endtreatdate
2017-01
enrolmonth
human
env_broad_scale
respiratory tract
env_local_scale
sputum
env_medium
black
ethnicity
1
f24mrcscore
-2.560239204
fev1z
Zimbabwe: Harare
geo_loc_name
trial
group
no
hospitalised12m
Homo sapiens
host
18.8
host_age
21.930487
host_body_mass_index
HIV-associated chronic lung disease
host_disease
65.97387315
host_height
yes
host_hiv_stat
female
host_sex
B1045
host_subject_id
['human respiratory', 'human respiratory']
host_tissue_sampled
GTGTTGCAGCAT
index_sequence
sputum
isolation_source
18 mths
lastvisit
2018-06-06T00:00:00
lastvisitdate
17.82 S 31.04 E
lat_lon
no
one_visit
no
only2visits
human sputum metagenome
http://purl.obolibrary.org/obo/NCBITaxon_2517771
organism
P4
plate_number
HIV-associated chronic lung disease
pulmonary_disord
no
reason_hospi
yes
rs14antib
COTRIMOXAZOLE
rs15antibty
R1
run_processing_batch
stored in primestore
samp_mat_process
['2', '']
samp_size
-80 °C
samp_store_temp
no
sample_extraction_controls
SP
sample_type
expectorated
sampling_induced_expectorated
no
sequencing_controls
no
smoker
08:51:00
sp05time
completed 18 months
study_complt_stat
no
tbtreat
0.027495531
templateDNA_16SqPCR
22.7617657
templateDNA_16SqPCR_Cq
38764.1
templateDNA_16SqPCR_copies
human sputum metagenome
title
Completed
treatstopreason
Placebo
trial_arm
Week 48
visit
yes
visit012
yes
visit018
yes
visit1218
2018-01-10T00:00:00
visit_date
7
visittotno
0
vllog
0
vload
43.6
weight
B11
well
0.17334028
zbmiuk
-3.7470198
zhauk
-2.1823223
zwauk
no
zymo_DNA