SARS-CoV-2: wastewater surveillance
BioSampleModel
2022-12-09
ENA-FIRST-PUBLIC
2022-12-09
ENA-LAST-UPDATE
SAMN32115823
External Id
CLT
INSDC center alias
CLT
INSDC center name
2022-12-09T01:16:57Z
INSDC first public
2022-12-09T01:16:57Z
INSDC last update
public
INSDC status
SRS16005396
SRA accession
WK90-3320_BioSample
Submitter Id
NCBI
broker name
North Carolina Department of Health and Human Services
collected_by
2022-10-03
collection_date
WK90-3320
collection_site_id
08:06
collection_time
40
collection_volume
membrane filtration with acidification and mgcl2
concentration_method
bcov vaccine
extraction_control
nuclisens manual magnetic bead extraction kit
extraction_method
USA: North Carolina
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
wastewater metagenome
organism
Wastewater sequencing of NC Wastewater Monitoring Network samples
project_name
public health surveillance community-level
purpose_of_ww_sampling
public health surveillance for the NC Wastewater Monitoring Network
purpose_of_ww_sequencing
WK90-3320
sample_name
charlotte 4
sample_title
University of North Carolina at Charlotte
sequenced_by
10-14-22-V2 BioSample
title
pepper mild mottle virus
ww_endog_control_1
racki et al. 2014; haramoto et al 201
ww_endog_control_1_protocol
15.44
ww_flow
82158
ww_population
census blocks clipped to wastewater service area polygon
ww_population_source
yes
ww_pre_treatment
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NC
ww_surv_jurisdiction
NCWW11661
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
13000
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
decaro et al. detection of bovine coronavirus using a taqman-based real-time rt-pcr assay.
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
30250
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
4
ww_temperature