SARS-CoV-2: wastewater surveillance
BioSampleModel
2022-12-09
ENA-FIRST-PUBLIC
2022-12-09
ENA-LAST-UPDATE
SAMN32115876
External Id
CLT
INSDC center alias
CLT
INSDC center name
2022-12-09T01:16:58Z
INSDC first public
2022-12-09T01:16:58Z
INSDC last update
public
INSDC status
SRS16006026
SRA accession
WK92-3412_BioSample
Submitter Id
NCBI
broker name
North Carolina Department of Health and Human Services
collected_by
2022-10-18
collection_date
WK92-3412
collection_site_id
04:07
collection_time
40
collection_volume
membrane filtration with acidification and mgcl2
concentration_method
bcov vaccine
extraction_control
nuclisens manual magnetic bead extraction kit
extraction_method
USA: North Carolina
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
wastewater metagenome
organism
Wastewater sequencing of NC Wastewater Monitoring Network samples
project_name
public health surveillance community-level
purpose_of_ww_sampling
public health surveillance for the NC Wastewater Monitoring Network
purpose_of_ww_sequencing
WK92-3412
sample_name
fayetteville - rockfish
sample_title
University of North Carolina at Charlotte
sequenced_by
10-28-22-V2 BioSample
title
pepper mild mottle virus
ww_endog_control_1
racki et al. 2014; haramoto et al 201
ww_endog_control_1_protocol
13.8
ww_flow
1.0
ww_industrial_effluent_percent
151589
ww_population
census blocks clipped to wastewater service area polygon
ww_population_source
yes
ww_pre_treatment
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
NC
ww_surv_jurisdiction
NCWW11753
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
9750
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N1)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
lu et al. us cdc real-time reverse transcription pcr panel for detection of severe acutre respirtaory syndrome coronavirus 2- volume 26, number 8 - august 2020 - emerging infectious diseases journal - cdc
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
18750
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
N gene (N2)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
4
ww_temperature