SAMN32262571
External Id
United States Department of Agriculture
INSDC center name
2022-12-16T00:00:00Z
INSDC first public
2022-12-16T09:01:13.297Z
INSDC last update
SRS16165856
INSDC secondary accession
live
INSDC status
MIMARKS.specimen
NCBI submission model
MIGS/MIMS/MIMARKS.host-associated
NCBI submission model
MIMARKS.specimen.host-associated.5.0
NCBI submission package
SRS16165856
SRA accession
2018
collection_date
Keywords: GSC:MIxS;MIMARKS:5.0
description
The V3-V4 region of the bacterial rRNA gene was amplified from total DNA using universal primer pair (5′-CCTACGGGDGGCWGCA-3′ and 5′-GGACTACHVGGGTMTCTAATC-3′) Sequencing was performed at the University of Arizona Genetics Core on a MiSeq following the manufacturer s guidelines.
design_description
Western US
env_broad_scale
Digestive Tract
env_local_scale
larva
env_medium
CA_403_S51_L001_R1_001.fastq.gz
filename
CA_403_S51_L001_R2_001.fastq.gz
filename2
fastq.gz
filetype
USA: Arizona
geo_loc_name
Western honey bee
host
Illumina MiSeq
instrument_model
whole larvae
isol_growth_condt
Apis mellifera larva
isolate
32.16 N 110.56 W
lat_lon
paired
library_layout
RANDOM
library_selection
METAGENOMIC
library_source
AMPLICON
library_strategy
Apis mellifera
http://purl.obolibrary.org/obo/NCBITaxon_7460
organism
ILLUMINA
platform
CA403
title