SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-12-21
ENA-FIRST-PUBLIC
2022-12-21
ENA-LAST-UPDATE
SAMN32319278
External Id
CDC-OAMD
INSDC center alias
CDC-OAMD
INSDC center name
2022-12-21T01:25:25Z
INSDC first public
2022-12-21T01:25:25Z
INSDC last update
public
INSDC status
SARS-CoV-2/Human/USA/NY-CDC-LC0954581/2022
Isolate
SRS16226295
SRA accession
SARS-CoV-2/Human/USA/NY-CDC-LC0954581/2022
Submitter Id
NCBI
broker name
Laboratory Corporation of America
collected_by
2022-12-03
collection_date
Nasal Swabs
collection_device
Nasal Swabs
collection_method
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
26.721
diagnostic_pcr_Ct_value_1
21.835
diagnostic_pcr_Ct_value_2
27.309
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: New York
geo_loc_name
Homo sapiens
host
32
host_age
COVID-19
host_disease
male
host_sex
Nasal Swabs
isolation_source
BQ.1.11
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title