SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-12-22
ENA-FIRST-PUBLIC
2022-12-22
ENA-LAST-UPDATE
SAMN32320085
External Id
CDC-OAMD
INSDC center alias
CDC-OAMD
INSDC center name
2022-12-22T01:21:22Z
INSDC first public
2022-12-22T01:21:22Z
INSDC last update
public
INSDC status
SARS-CoV-2/Human/USA/CA-CDC-LC0956461/2022
Isolate
SRS16226159
SRA accession
SARS-CoV-2/Human/USA/CA-CDC-LC0956461/2022
Submitter Id
NCBI
broker name
Laboratory Corporation of America
collected_by
2022-12-06
collection_date
Nasal Swabs
collection_device
Nasal Swabs
collection_method
N1 gene
diagnostic_gene_name_1
N2 gene
diagnostic_gene_name_2
RP gene
diagnostic_gene_name_3
23.824
diagnostic_pcr_Ct_value_1
21.96
diagnostic_pcr_Ct_value_2
27.387
diagnostic_pcr_Ct_value_3
Labcorp LDT
diagnostic_pcr_protocol_1
Labcorp LDT
diagnostic_pcr_protocol_2
Labcorp LDT
diagnostic_pcr_protocol_3
USA: California
geo_loc_name
Homo sapiens
host
50
host_age
COVID-19
host_disease
female
host_sex
Nasal Swabs
isolation_source
BQ.1.1
lineage/clade name
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
baseline surveillance (random sampling)
purpose_of_sequencing
CDC Sars CoV2 Sequencing Baseline Constellation
title