SARS-CoV-2: clinical or host-associated
BioSampleModel
2022-12-28
ENA-FIRST-PUBLIC
2022-12-28
ENA-LAST-UPDATE
SAMN32420951
External Id
pda|praveen.cherukuri@orcid
INSDC center alias
pda|praveen.cherukuri@orcid
INSDC center name
2022-12-28T01:23:47Z
INSDC first public
2022-12-28T01:23:47Z
INSDC last update
public
INSDC status
SRS16289538
SRA accession
SMGL_COVSeq_969
Submitter Id
NCBI
broker name
Sanford Health
collected_by
2022-09-13
collection_date
Virus Transport Medium [OBI:0002866]
collection_device
Swabbing [GENEPIO:0002117]
collection_method
USA: South Dakota
geo_loc_name
Homo sapiens
host
22.269444444444446
host_age
COVID-19 [MONDO:0100096]
host_disease
female
host_sex
SARS-CoV-2/human/USA/SMGL_COVSeq_969/2022
isolate
clinical
isolation_source
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
Diagnostic Testing [GENEPIO:0100002]
purpose_of_sampling
Baseline surveillance (random sampling) [GENEPIO:0100005]
purpose_of_sequencing
Determining early introductions and spread
purpose_of_sequencing_details
N (orf9)
sars_cov_2_diag_gene_name_1
ORF1ab (rep)
sars_cov_2_diag_gene_name_2
21.618
sars_cov_2_diag_pcr_ct_value_1
19.922
sars_cov_2_diag_pcr_ct_value_2
Sanford Medical Genetics Laboratory
sequenced_by
Severe acute respiratory syndrome coronavirus 2
title