MIMS.me
BioSampleModel
MIGS/MIMS/MIMARKS.plant-associated
BioSampleModel
2022-12-29
ENA-FIRST-PUBLIC
2022-12-29
ENA-LAST-UPDATE
SAMN32393624
External Id
pda|krishnaray
INSDC center alias
pda|krishnaray
INSDC center name
2022-12-29T01:17:50Z
INSDC first public
2022-12-29T01:17:50Z
INSDC last update
public
INSDC status
SRS16291946
SRA accession
Root endosphere microbiome of Sundarbans cultivated rice grown in consortium BC1 added soil
Submitter Id
NCBI
broker name
2022-10-26
collection_date
This study was initiated to find out the abundance of different bacterial communities present in the root endospheres of cultivated rice of Indian Sundarbans. It was done through isolation of root endospheric DNA and amplicon database generation through 16S rRNA Sequencing using Illumina MiSeq platform of next generation sequencing. Comparison of this root endospheric microbiome information with that of PGPR consortia added cultivated rice rhizospheric soil microbiome from Indian Sundarbans might result into identification of some particular bacterial community abundances which could indicate the rhizosphere PGPR bacterial enrichment may also influence the rice root endospheric microbiome.
description
cultivated rice root endosphere microbiome
env_broad_scale
pot grown rice plants at greenhouse
env_local_scale
surface sterilized rice roots
env_medium
India: Kolkata
geo_loc_name
Oryza sativa
host
22.73 N 88.43 E
lat_lon
root metagenome
http://purl.obolibrary.org/obo/NCBITaxon_1118232
organism
MIMS Environmental/Metagenome sample from Root endosphere microbiome of Sundarbans cultivated rice
title