SAMN20858213
External Id
Cultured
Huan-huan Guo
North Minzu University
INSDC center name
2022-12-31T01:00:53.630Z
INSDC first public
2022-12-31T01:00:53.630Z
INSDC last update
live
INSDC status
Cultured
Jian-ren Xu
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
isolated
Wen-xing Lin
Genome extraction
Xiao-li Ma
Identified
Xiu-li Wu
Cultured
Yun-qi Hu
Collected and profiled
Zhi-bo Jiang
1120 m
altitude
Prof. Xiu-li Wu
biomaterial_provider
Prof. Xiu-li Wu
collected_by
2019-09-10
collection_date
0.4 m
depth
Strain V-1-3 came from the root soil of Lycium barbarum in Ningxia and was identified as Streptomyces. 16S rRNA sequencing and construction of evolutionary tree showed that it had high homology with the known strain Streptomyces fradiae. Comparing V-1-3 with the known key genes of Streptomyces, the results showed that V-1-3 should be a variant of Streptomyces fradiae. The whole genome sequence alignment showed that the homology was 83.1%. The analysis and prediction of secondary metabolite biosynthesis gene clusters can give us an in-depth understanding of microbial metabolism. The metabolites of the strain were analyzed by GNPs platform.
description
soil
env_broad_scale
China: Yinchuan
geo_loc_name
Prof. Xiu-li Wu
identified_by
soil
isolation_source
Streptomyces sp. v-1-3
http://purl.obolibrary.org/obo/NCBITaxon_2872155
organism
no
passage_history
7,861,535 bp
samp_size
single cell
sample_type
v-1-3
strain
15.7
temp
Streptomyces fradiae V-1-3
title