ERC000052
ENA-CHECKLIST
2022-08-02
ENA-FIRST-PUBLIC
2022-08-02
ENA-LAST-UPDATE
SAMEA7817176
External Id
UNIVERSITY OF COPENHAGEN
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
2022-08-02T16:46:29Z
INSDC first public
2022-08-02T16:46:29Z
INSDC last update
public
INSDC status
Gallus gallus
Organism
ERS5564382
SRA accession
CB10_16C1a_metaG_rev
Submitter Id
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;GAACGACATGGCTACGATCCGACTT
adapters
2019-06-04
collection date
chicken MAG catalogue data from Ileum content; animal CB10.16 from cage CB10 with treatment CC
description
Spain
geographic location (country and/or sea)
41.170047
DD
geographic location (latitude)
1.168491
DD
geographic location (longitude)
El Morell; Tarragona
geographic location (region and locality)
Ileum content
host body site
Ross
host breed
Chicken
host common name
Control
host diet treatment
Campylobacter:-;Salmonella:-;Clostridium:-
host disease status
Gallus gallus
host scientific name
female
host sex
21
°C
host storage container temperature
CB10.16
host subject id
9031
host taxid
2059.6
g
host total mass
D-rex protocol
nucleic acid extraction
chicken gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_506600
organism
HoloFood
project
HoloFood Chicken - MAG Catalogue from Ileum content
project name
GCF_000002315.6
reference host genome for decontamination
Shield
sample storage buffer
E-matrix 2ml
sample storage container
UCPH
sample storage location
-20
°C
sample storage temperature
0.2
mL
sample volume or weight for DNA extraction
MGISEQ-2000
sequencing method
CB10.16C1a
title
35
day
trial length
35
day
trial timepoint