ERC000052
ENA-CHECKLIST
2022-08-02
ENA-FIRST-PUBLIC
2022-08-02
ENA-LAST-UPDATE
SAMEA14099422
External Id
UNIVERSITY OF COPENHAGEN
INSDC center alias
UNIVERSITY OF COPENHAGEN
INSDC center name
2022-08-02T16:47:43Z
INSDC first public
2022-08-02T16:47:43Z
INSDC last update
public
INSDC status
Gallus gallus
Organism
ERS11702510
SRA accession
CB03_16F1a_NTM_rev_metaG
Submitter Id
AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC
adapters
2019-06-04
collection date
NTM caecum content
common name
main associated run/experiment: ERR9612718/ERX9162941, merged from ERR4303137/ERX4251846 and ERR6785290/ERX6409070 (linked to this sample as well); Chicken meta genome data from Caecum content; animal CB03.16 from cage CB03 with treatment CC
description
Spain
geographic location (country and/or sea)
41.170047
DD
geographic location (latitude)
1.168491
DD
geographic location (longitude)
El Morell; Tarragona
geographic location (region and locality)
Caecum content
host body site
Cobb
host breed
Chicken
host common name
Control
host diet treatment
Campylobacter:-;Salmonella:-;Clostridium:-
host disease status
Gallus gallus
host scientific name
male
host sex
21
°C
host storage container temperature
CB03.16
host subject id
9031
host taxid
2547.0
g
host total mass
BEMT
library name
PCR
library selection
D-rex protocol
nucleic acid extraction
chicken gut metagenome
http://purl.obolibrary.org/obo/NCBITaxon_506600
organism
HoloFood
project
HoloFood Chicken -- None targeted metabolomic
project name
GCF_000002315.6
reference host genome for decontamination
Shield
sample storage buffer
E-matrix 2ml
sample storage container
UCPH
sample storage location
-20
°C
sample storage temperature
0.2
mL
sample volume or weight for DNA extraction
MGISEQ-2000
sequencing method
CB03.16F1a
title
35
day
trial length
35
day
trial timepoint