characteristics.text: SAMN10332717
characteristics.characteristic: External Id
characteristics.text: Utah State University
characteristics.characteristic: INSDC center name
characteristics.text: 2018-10-26T00:00:00Z
characteristics.characteristic: INSDC first public
characteristics.text: 2022-05-24T21:06:29.987Z
characteristics.characteristic: INSDC last update
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Microbe, viral or environmental
characteristics.characteristic: NCBI submission model
characteristics.text: Microbe.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: 2011
characteristics.characteristic: collection date
characteristics.text: A novel oomycete root pathogen has been identified and characterized, Pythium brassicum P1. It only attacks plant species belonging to brassicaceae family causing root necrosis, stunting and yield loss. Since P. brassicum P1 is limited in host range, this prompted us to sequence the whole genome and compare it to those of broad host range Pythium species. The assembled sequencing data yielded a total genome size of 50.3Mb contained in 5,434 scaffolds, N50 of 30.2 Kb, 61.2% G+C content, and 13,232 putative protein-coding genes. A comprehensive annotation has been performed further to identify functional classes, pathogenesis-related genes, secretome, synteny analysis, identification of carbohydrate-active enzymes, candidate effectors, and identification of over- and under-represented families, etc.
characteristics.characteristic: description
characteristics.text: USA: Palo Verde Valley, California
characteristics.characteristic: geo loc name
characteristics.text: Brassica oleracea
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_3712
characteristics.characteristic: host
characteristics.text: Stunted broccoli plants
characteristics.characteristic: isolation source
characteristics.text: [Pythium] brassicae (nom. inval.)
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_1485010
characteristics.characteristic: organism
characteristics.text: Tissue sample (root tissue), isolated from root tissue of broccoli and cultured on V8 agar medium
characteristics.characteristic: sample type
characteristics.text: P1
characteristics.ontologyTerms: http://www.ebi.ac.uk/efo/EFO_0002948
characteristics.characteristic: strain
characteristics.text: Pythium brassicum P1, oomycete sample str. P1
characteristics.characteristic: title