characteristics.text: SAMN32046901
characteristics.characteristic: External Id
characteristics.text: New Mexico State University Food Safety Laboratory GenomeTrakr submission group
characteristics.characteristic: INSDC center name
characteristics.text: 2022-12-05T00:00:00Z
characteristics.characteristic: INSDC first public
characteristics.text: 2023-04-12T10:53:17.958Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS15971205
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: SARS-CoV-2: wastewater surveillance
characteristics.characteristic: NCBI submission model
characteristics.text: SARS-CoV-2.wwsurv.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS15971205
characteristics.characteristic: SRA accession
characteristics.text: New Mexico State University - Las Cruces
characteristics.characteristic: collected_by
characteristics.text: 2022-11-02
characteristics.characteristic: collection_date
characteristics.text: WW-NMLCEM
characteristics.characteristic: collection_site_id
characteristics.text: 1 L
characteristics.characteristic: collection_volume
characteristics.text: peg precipitation + ultracentrifugation
characteristics.characteristic: concentration_method
characteristics.text: murine norovirus
characteristics.characteristic: extraction_control
characteristics.text: Qiagen allprep powerviral DNA/RNA kit
characteristics.characteristic: extraction_method
characteristics.text: USA: New Mexico
characteristics.characteristic: geo_loc_name
characteristics.text: wastewater
characteristics.characteristic: isolation_source
characteristics.text: wastewater metagenome
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_527639
characteristics.characteristic: organism
characteristics.text: GenomeTrakr; LFFM ww project
characteristics.characteristic: project_name
characteristics.text: public health surveillance community-level
characteristics.characteristic: purpose_of_ww_sampling
characteristics.text: Community Surveillance for SARS-CoV-2 Variants
characteristics.characteristic: purpose_of_ww_sequencing
characteristics.text: New Mexico State University - Las Cruces
characteristics.characteristic: sequenced_by
characteristics.text: SARS-CoV-2 wastewater surveillance
characteristics.characteristic: title
characteristics.text: crAssphage
characteristics.characteristic: ww_endog_control_1
characteristics.text: 17.60
characteristics.characteristic: ww_endog_control_1_conc
characteristics.text: RT-qPCR Detection of Process Controls (Murine noroviurs and crAssphage) from Wastewater using AB 7500 (protocols.io)
characteristics.characteristic: ww_endog_control_1_protocol
characteristics.text: cycles (Ct value)
characteristics.characteristic: ww_endog_control_1_units
characteristics.text: 3800000
characteristics.characteristic: ww_flow
characteristics.text: 40000
characteristics.characteristic: ww_population
characteristics.text: 24
characteristics.characteristic: ww_sample_duration
characteristics.text: raw wastewater
characteristics.characteristic: ww_sample_matrix
characteristics.text: wastewater treatment plant
characteristics.characteristic: ww_sample_site
characteristics.text: composite
characteristics.characteristic: ww_sample_type
characteristics.text: NM
characteristics.characteristic: ww_surv_jurisdiction
characteristics.text: SARS-CoV-2
characteristics.characteristic: ww_surv_target_1
characteristics.text: 41.81
characteristics.characteristic: ww_surv_target_1_conc
characteristics.text: cycles (Ct value)
characteristics.characteristic: ww_surv_target_1_conc_unit
characteristics.text: N gene (N1)
characteristics.characteristic: ww_surv_target_1_gene
characteristics.text: yes
characteristics.characteristic: ww_surv_target_1_known_present
characteristics.text: RT-qPCR Detection of SARS-CoV-2 from Wastewater Using the AB 7500 (protocols.io)
characteristics.characteristic: ww_surv_target_1_protocol
characteristics.text: SARS-CoV-2
characteristics.characteristic: ww_surv_target_2
characteristics.text: Non-detect
characteristics.characteristic: ww_surv_target_2_conc
characteristics.text: cycles (Ct value)
characteristics.characteristic: ww_surv_target_2_conc_unit
characteristics.text: N gene (N2)
characteristics.characteristic: ww_surv_target_2_gene
characteristics.text: no
characteristics.characteristic: ww_surv_target_2_known_present
characteristics.text: 20
characteristics.characteristic: ww_temperature