characteristics.text: SAMN33807011
characteristics.characteristic: External Id
characteristics.text: NORTH-WEST UNIVERSITY
characteristics.characteristic: INSDC center name
characteristics.text: 2023-03-18T00:00:00Z
characteristics.characteristic: INSDC first public
characteristics.text: 2023-04-04T08:46:50.282Z
characteristics.characteristic: INSDC last update
characteristics.text: SRS17083847
characteristics.characteristic: INSDC secondary accession
characteristics.text: live
characteristics.characteristic: INSDC status
characteristics.text: Pathogen.env
characteristics.characteristic: NCBI submission model
characteristics.text: Pathogen.env.1.0
characteristics.characteristic: NCBI submission package
characteristics.text: SRS17083847
characteristics.characteristic: SRA accession
characteristics.text: 3038394
characteristics.characteristic: Tax ID
characteristics.text: North West University
characteristics.characteristic: collected_by
characteristics.text: 2021-04-03
characteristics.characteristic: collection_date
characteristics.text: Genomic DNA was extracted from two aEPEC O177 isolates (CF-154-A and CF-334-B) obtained from the Department of Microbiology, at NWU. The gDNA was sequenced using Illumina MiSeq platform. After sequencing FASTQ files were obtained. Raw reads were cleaned and assembled into contigs using FASTQC (v.0.11.5) SPAdes (v3.13.0), respectively. The genome annotation was carried out using PGAP, v.2.0 and RAST (v.2.0). The genome maps were drafted using PATRIC (v.3.6.2).
characteristics.characteristic: description
characteristics.text: UIDA
characteristics.characteristic: genotype
characteristics.text: South Africa
characteristics.characteristic: geo_loc_name
characteristics.text: North West province, South Africa
characteristics.characteristic: isolation_source
characteristics.text: 27.00 S 26.00 E
characteristics.characteristic: lat_lon
characteristics.text: Escherichia coli O155:H21
characteristics.ontologyTerms: http://purl.obolibrary.org/obo/NCBITaxon_3038394
characteristics.characteristic: organism
characteristics.text: Eschericia coli - STEC
characteristics.characteristic: passage_history
characteristics.text: Eschericia coli - STEC
characteristics.characteristic: pathotype
characteristics.text: O155:H21
characteristics.characteristic: serotype
characteristics.text: NWU_1
characteristics.characteristic: strain
characteristics.text: Pathogen: environmental/food/other sample from Escherichia coli O155:H21
characteristics.characteristic: title