SAMN35200772
External Id
Virginia Division of Consolidated Laboratory Services Sequencing Submission Group
INSDC center name
2023-05-19T00:00:00Z
INSDC first public
2023-05-19T10:49:29.153Z
INSDC last update
SRS17744762
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS17744762
SRA accession
Virginia Division of Consolidated Laboratory Services
collected_by
2022-06-28
collection_date
51069
collection_site_id
06:30 - 06:30
collection_time
100mL
collection_volume
innovaprep ultrafiltration
concentration_method
SARS-CoV-2 Standard spiked with MHV
extraction_control
zymo quick-rna viral kit
extraction_method
USA: Virginia
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project_name
public health surveillance community-level
purpose_of_ww_sampling
diversity of mutations across entire genome
purpose_of_ww_sequencing
Virginia Division of Consolidated Laboratory Services
sequenced_by
Concentrating pipette
specimen_processing_details
SARS-CoV-2: wastewater surveillance
title
4290000
ww_flow
7.67
ww_ph
16563
ww_population
population of jurisdiction encompassing the wastewater service area
ww_population_source
https://www.bio-rad.com/sites/default/files/webroot/web/pdf/lsr/literature/10000142158.pdf
ww_processing_protocol
24
ww_sample_duration
post grit removal
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
VA
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
8911
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
N gene (N2)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
ddPCR detection of SARS-CoV-2 using the BioRad PREvalence Kit on the BioRad QXOne
ww_surv_target_1_protocol
SARS-CoV-2
ww_surv_target_2
11823
ww_surv_target_2_conc
copies/L
ww_surv_target_2_conc_unit
E gene (orf4)
ww_surv_target_2_gene
yes
ww_surv_target_2_known_present
22
ww_temperature