SAMN35305029
External Id
CDPHE SARS-CoV-2 submissions
INSDC center name
2023-05-22T00:00:00Z
INSDC first public
2023-05-22T17:51:51.640Z
INSDC last update
SRS17778971
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS17778971
SRA accession
CDPHE
collected_by
2023-01-31
collection_date
WL
collection_site_id
innovaprep ultrafiltration
concentration_method
MHV
extraction_control
qiagen EZ1 RNA extraction kit
extraction_method
USA: Colorado, Jackson, county
geo_loc_name
0.08
instantaneous_flow
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads
project_name
public health surveillance community-level
purpose_of_ww_sampling
diversity of mutations across entire genome
purpose_of_ww_sequencing
CDPHE
sequenced_by
SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome
title
NaN
ww_flow
1536
ww_population
census blocks clipped to wastewater service area polygon
ww_population_source
0
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
grab
ww_sample_type
WL20230131
ww_surv_system_sample_id
SARS-CoV-2
ww_surv_target_1
5640.0
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
n2
ww_surv_target_1_gene
no
ww_surv_target_1_known_present