SAMN35322833
External Id
The Aga Khan University
INSDC center name
2023-05-23T00:00:00Z
INSDC first public
2023-05-23T04:52:21.067Z
INSDC last update
SRS17784732
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
Original
Passage details/history
SRS17784732
SRA accession
Non-sentinel-surveillance (hospital)
Sampling Strategy
betacoronavirus
Type
Clinical Lab, Aga Khan University Hospital
collected_by
2023-04-01
collection_date
Sterile Dacron Swab
collection_device
Pakistan: Karachi
geo_loc_name
hCoV-19/Pakistan/IDRL-AKU-KHI-3041-S3/2023
gisaid_virus_name
Homo sapiens
host
50
host_age
nasopharynx
host_anatomical_part
COVID-19
host_disease
male
host_sex
3041
isolate
nasal swab
isolation_source
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
Diagnostic testing
purpose_of_sampling
baseline surveillance (random sampling)
purpose_of_sequencing
Infectious Diseases Research Laboratory, Department of Pediatrics and Child Health, Faculty of Health Sciences, Medical College, The Aga Khan University, Stadium Road, Karachi-74800, Pakistan
sequenced_by
SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2
title