SAMN34719148
External Id
University of Texas at Austin
INSDC center name
2023-06-06T06:41:35.650Z
INSDC first public
2023-06-08T00:34:07.723Z
INSDC last update
SRS17894903
INSDC secondary accession
live
INSDC status
MIGS/MIMS/MIMARKS.human-associated
NCBI submission model
MIMS.me
NCBI submission model
MIMS.me.human-associated.6.0
NCBI submission package
SRS17894903
SRA accession
2019-12
collection_date
The purpose of this study was to evaluate if systematic differences occur when different commercially available DNA extraction kits are used for whole metagenomic sequencing (WMS) analysis of the human microbiome. Oral, vaginal, and rectal swabs were collected in replicates of four by a healthcare provider from five participants and randomized to one of four DNA extraction kits. Two extraction blanks and three replicate mock community samples were also extracted using each extraction kit. WMS was completed with NovaSeq 6000 for all samples.
description
human microbiome
env_broad_scale
oral | gut | vaginal
env_local_scale
human oral swab | human rectal swab | human vaginal swab
env_medium
USA: Austin, Texas
geo_loc_name
Homo sapiens
host
female
host_sex
30.2672 N 97.7431 W
lat_lon
human metagenome
http://purl.obolibrary.org/obo/NCBITaxon_646099
organism
MIMS Environmental/Metagenome sample from human metagenome
title