SAMN35709900
External Id
Vali-e-Asr University of Rafsanjan
INSDC center name
2023-06-11T00:00:00Z
INSDC first public
2023-06-11T18:01:03.403Z
INSDC last update
live
INSDC status
MIGS.ba
NCBI submission model
MIGS/MIMS/MIMARKS.agriculture
NCBI submission model
MIGS.ba.agriculture.6.0
NCBI submission package
Phenazine
chem_administration
2011
collection_date
Pseudomonas chlororaphis subsp. aureofaciens strain VUPf5 is a successful biocontrol agent in the biological control of plant diseases. This strain also has the ability to increase plant growth. In this study, we used the Illumina platform (Paired-end) to investigate its whole genome for discovering new achievements in the genetic clusters in accordance with the tracked metabolites of the bacterium under specific growth conditions.
description
-
env_broad_scale
-
env_local_scale
ENVO:00010483
env_medium
-
food_source
Iran: Gilan province, Rasht
geo_loc_name
10 years
host_age
peach tree
host_common_name
Prunus Persica
host_genotype
2 meter
host_height
1.5 meter
host_length
Post-harvest stage
host_life_stage
peach tree
host_phenotype
50 kg
host_tot_mass
25 Celsius
isol_growth_condt
Peach tree rhizosphere
isolation_source
37.2713 N 49.5921 E
lat_lon
-
microbial_biomass
-
microbial_biomass_meth
distilled water, DNA-free PCR mix, sterile swab, sterile syringe
neg_cont_type
-
num_replicons
Pseudomonas chlororaphis subsp. aureofaciens
http://purl.obolibrary.org/obo/NCBITaxon_587851
organism
-
ref_biomaterial
long time in -80
samp_store_dur
-
samp_store_loc
-
sieving
clay and sand
soil_type
-
soil_type_meth
one day
store_cond
VUPf5
strain
aureofaciens
sub species
below 4 Celsius
temp
Pseudomonas chlororaphis subsp. aureofaciens strain VUPf5 Complete Genome
title