SAMN24010474
External Id
ALAMEDA COUNTY DEPARTMENT OF PUBLIC HEALTH
INSDC center name
2021-12-13T00:00:00Z
INSDC first public
2023-06-23T22:34:29.917Z
INSDC last update
SRS18053921
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS18053921
SRA accession
R
amoxicillin_clavulinc_acid
R
ampicillin
R
ampicillin sulbactam
Vitek-2
ast_method
yes
carbapenemase
R
cefazolin
R
cefepime
R
ceftazidime
R
ceftriaxone
Outpatient
collected by
Carbapenem resistant Enterobacteriales
description
R
ertapenem
CTX-M-15
esbl
NDM-5
genotype
USA: California
geo loc name
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
host
not collected
host disease
>32
http://www.ebi.ac.uk/efo/EFO_0001195
i_r_mic_(g/ml)
R
i_r_susceptibility
R
imipenem
urine
http://purl.obolibrary.org/obo/UBERON_0001088
isolation source
not collected
lat lon
Not Tested
mcim_result
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
OXA-1; TEM-1
other__lactamase
Nutrient agar or blood agar slants received from clinical lab. Sequencing performed directly from clinical slant. One passage to nutrient broth for Susceptibility testing.
passage_history
ST-405
strain
R
tazobactam
Pathogen: clinical or host-associated sample from Escherichia coli
title