unknown
Additional host information
unknown
Additional location information
"National Stadium Road, Aga Khan University Hospital, Karachi, Karachi City, Sindh 74800"
Address
CZ ID miniwdl SARS-CoV-2 Consensus Genome Worklfow
Assembly method
2340.51x
Coverage
SAMN35848261
External Id
The Aga Khan University
INSDC center name
2023-06-23T00:00:00Z
INSDC first public
2023-06-23T06:41:30.373Z
INSDC last update
SRS18046314
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
"Clinical Lab, Aga Khan University Hospital"
Originating lab
Original
Passage details/history
unknown
Patient status
SRS18046314
SRA accession
3734
Sample ID given by originating laboratory
S5
Sample ID given by the submitting laboratory
Non-sentinel-surveillance (hospital)
Sampling Strategy
Illumina iSeq 100
Sequencing technology
"Infectious Diseases Research Laboratory, Department of Pediatrics and Child Health"
Submitting lab
betacoronavirus
Type
Clinical Lab, Aga Khan University Hospital
collected_by
2023-05-08
collection_date
Sterile Dacron Swab
collection_device
unknown
date_of_sars_cov_2_vaccination
unknown
exposure_event
Pakistan: Karachi
geo_loc_name
hCoV-19/Pakistan/IDRL-AKU-KHI-3734-S5/2023
gisaid_virus_name
Homo sapiens
host
60
host_age
nasopharynx
host_anatomical_part
COVID-19
host_disease
male
host_sex
3734
isolate
nasal swab
isolation_source
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
unknown
prior_sars_cov_2_antiviral_treat
Diagnostic testing
purpose_of_sampling
baseline surveillance (random sampling)
purpose_of_sequencing
Infectious Diseases Research Laboratory, Department of Pediatrics and Child Health, Faculty of Health Sciences, Medical College, The Aga Khan University, Stadium Road, Karachi-74800, Pakistan
sequenced_by
SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2
title
unknown
vaccine_received