Fever, Sore Throat, Aches and Pain, Severe Blisters in Mouth
Additional host information
unknown
Additional location information
"National Stadium Road, Aga Khan University Hospital, Karachi, Karachi City, Sindh 74800"
Address
CZ ID miniwdl SARS-CoV-2 Consensus Genome Worklfow
Assembly method
2629.267x
Coverage
SAMN35848268
External Id
The Aga Khan University
INSDC center name
2023-06-23T00:00:00Z
INSDC first public
2023-06-23T06:41:24.533Z
INSDC last update
SRS18046308
INSDC secondary accession
live
INSDC status
SARS-CoV-2: clinical or host-associated
NCBI submission model
SARS-CoV-2.cl.1.0
NCBI submission package
"Clinical Lab, Aga Khan University Hospital"
Originating lab
Original
Passage details/history
Alive
Patient status
SRS18046308
SRA accession
3915
Sample ID given by originating laboratory
S14
Sample ID given by the submitting laboratory
Non-sentinel-surveillance (hospital)
Sampling Strategy
Illumina iSeq 100
Sequencing technology
"Infectious Diseases Research Laboratory, Department of Pediatrics and Child Health"
Submitting lab
betacoronavirus
Type
Clinical Lab, Aga Khan University Hospital
collected_by
2023-05-27
collection_date
Sterile Dacron Swab
collection_device
2021-12-20
date_of_sars_cov_2_vaccination
Restaurant
exposure_event
Pakistan: Karachi
geo_loc_name
hCoV-19/Pakistan/IDRL-AKU-KHI-3915-S14/2023
gisaid_virus_name
Homo sapiens
host
60
host_age
nasopharynx
host_anatomical_part
COVID-19
host_disease
female
host_sex
3915
isolate
nasal swab
isolation_source
Severe acute respiratory syndrome coronavirus 2
http://purl.obolibrary.org/obo/NCBITaxon_2697049
organism
unknown
prior_sars_cov_2_antiviral_treat
Diagnostic testing
purpose_of_sampling
baseline surveillance (random sampling)
purpose_of_sequencing
Infectious Diseases Research Laboratory, Department of Pediatrics and Child Health, Faculty of Health Sciences, Medical College, The Aga Khan University, Stadium Road, Karachi-74800, Pakistan
sequenced_by
SARS-CoV-2: clinical or host-associated sample from Severe acute respiratory syndrome coronavirus 2
title
Pfizer
vaccine_received