SAMN35820712
External Id
National Center for Toxicological Research
INSDC center name
2023-06-21T00:00:00Z
INSDC first public
2023-06-23T13:17:38.610Z
INSDC last update
SRS18049745
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS18049745
SRA accession
FDA National Center for Toxicological Research
collected_by
2022-10-18
collection_date
Pine Bluff
collection_site_id
peg precipitation
concentration_method
TaqMan Universal RNA Spike In/Reverse Transcription (Xeno) Control
extraction_control
ThermoFisher MagMAX™ Microbiome Ultra Nucleic Acid Isolation Kit
extraction_method
USA: Arkansas
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
GenomeTrakr; LFFM ww project
project_name
public health surveillance community-level
purpose_of_ww_sampling
FDA National Center for Toxicological Research
sequenced_by
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
Pepper mild mottle virus (PMMoV)
ww_endog_control_1
20.828758239746094
ww_endog_control_1_conc
cycles (Ct value)
ww_endog_control_1_units
22712470.799999997
ww_flow
50000
ww_population
24
ww_sample_duration
raw wastewater
ww_sample_matrix
wastewater treatment plant
ww_sample_site
composite
ww_sample_type
AR
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
31.816801071166992
ww_surv_target_1_conc
cycles (Ct value)
ww_surv_target_1_conc_unit
orf1ab (rep)
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
TaqMan™ 2019-nCoV Assay Kit v1 Applied Biosystems
ww_surv_target_1_protocol