SAMN35061711
External Id
Salk
INSDC center name
2023-06-30T00:51:09.990Z
INSDC first public
2023-06-30T00:51:09.990Z
INSDC last update
SRS17636319
INSDC secondary accession
live
INSDC status
L001-620
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636319
SRA accession
0
SRE
-91.20062719
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1430
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Sjap_091222_95etoh_4C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
8.1
femto_100k_1M
45.2
femto_10k_25k
27.8
femto_1_10k
100.2
femto_1_1M
17.4
femto_25k_50k
2.1
femto_50k_100k
10.2
femto_50k_1M
3.5704
femto_conc
2022-11-07a
femto_date
40083
femto_mean_bp
23
fish_FL_cm
25
fish_TL_cm
139
fish_mass_g
fish_1
fish_number
9
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Sjap091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
26786
nanoplot_N50
26.8
nanoplot_N50_kb
12996.4
nanoplot_mean_RL
18.2
nanoplot_mean_RQ
362001303
nanoplot_total_bases
362
nanoplot_total_bases_Mb
27854
nanoplot_total_reads
2.35
nd_260230_b
2.4
nd_260230_m
2.383333333
nd_260230_mean
2.4
nd_260230_t
1.86
nd_260280_b
1.87
nd_260280_m
1.87
nd_260280_mean
1.88
nd_260280_t
306
nd_conc_b
263
nd_conc_m
268.6666667
nd_conc_mean
237
nd_conc_t
12.9704538
nd_cv
31-Oct-22
nd_date
7
nd_days
1
nd_success
Scomber japonicus
http://purl.obolibrary.org/obo/NCBITaxon_13676
organism
not applicable
phenotype
46.86593336
q_cv
10/31/22
q_date
7
q_days
24.43333333
q_total_ug
376
qbr_conc_b
189
qbr_conc_m
244.3333333
qbr_conc_mean
168
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
60 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_6w_SRE0
treatment
99
tube_number
90
tube_number