SAMN35061616
External Id
Salk
INSDC center name
2023-06-30T00:51:09.470Z
INSDC first public
2023-06-30T00:51:09.470Z
INSDC last update
SRS17636384
INSDC secondary accession
live
INSDC status
L001-655
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636384
SRA accession
0
SRE
-36.72154617
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1330
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Gnig_090722_95etoh_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
14-Sep-22
extraction_date
29.2
femto_100k_1M
27.9
femto_10k_25k
3.6
femto_1_10k
100.1
femto_1_1M
34
femto_25k_50k
5.8
femto_50k_100k
35
femto_50k_1M
8.9884
femto_conc
2022-11-07a
femto_date
98125
femto_mean_bp
17.8
fish_FL_cm
18.5
fish_TL_cm
128.3
fish_mass_g
fish_4
fish_number
2
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Gnig090722
isolate
not applicable
isolation_source
32.75879 N 117.2433 W
lat_lon
32.75879
latitute
MB quivira jetty south
location
-117.2433
longitude
2794
nanoplot_N50
2.8
nanoplot_N50_kb
1358.6
nanoplot_mean_RL
15.4
nanoplot_mean_RQ
1432268728
nanoplot_total_bases
1432.3
nanoplot_total_bases_Mb
1054206
nanoplot_total_reads
2.38
nd_260230_b
2.39
nd_260230_m
2.393333333
nd_260230_mean
2.41
nd_260230_t
1.86
nd_260280_b
1.86
nd_260280_m
1.86
nd_260280_mean
1.86
nd_260280_t
1125
nd_conc_b
1122
nd_conc_m
1082.666667
nd_conc_mean
1001
nd_conc_t
6.533988249
nd_cv
14-Oct-22
nd_date
30
nd_days
1
nd_success
Girella nigricans
http://purl.obolibrary.org/obo/NCBITaxon_214657
organism
not applicable
phenotype
17.10526316
q_cv
10/14/22
q_date
30
q_days
152
q_total_ug
1820
qbr_conc_b
1380
qbr_conc_m
1520
qbr_conc_mean
1360
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
1 hr 5 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_1w_SRE0
treatment
47
tube_number
4
tube_number