SAMN35061605
External Id
Salk
INSDC center name
2023-06-30T00:54:50.987Z
INSDC first public
2023-06-30T00:54:50.987Z
INSDC last update
SRS17636250
INSDC secondary accession
live
INSDC status
L001-809
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636250
SRA accession
1
SRE
-74.51997308
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Ejac_090922_95etoh_4C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
30-Sep-22
extraction_date
26.6
femto_100k_1M
16.9
femto_10k_25k
2.1
femto_1_10k
101.5
femto_1_1M
47.5
femto_25k_50k
8.8
femto_50k_100k
35.4
femto_50k_1M
0.6238
femto_conc
2022-11-08a
femto_date
109445
femto_mean_bp
20.1
fish_FL_cm
20.3
fish_TL_cm
214.5
fish_mass_g
fish_5
fish_number
3
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Ejac090922
isolate
not applicable
isolation_source
32.76044 N 117.2454 W
lat_lon
32.76044
latitute
MB jetty North
location
-117.2454
longitude
6436
nanoplot_N50
6.4
nanoplot_N50_kb
3002.2
nanoplot_mean_RL
15.5
nanoplot_mean_RQ
3320434
nanoplot_total_bases
3.3
nanoplot_total_bases_Mb
1106
nanoplot_total_reads
2.5
nd_260230_b
2.48
nd_260230_m
2.52
nd_260230_mean
2.58
nd_260230_t
1.89
nd_260280_b
1.89
nd_260280_m
1.893333333
nd_260280_mean
1.9
nd_260280_t
952
nd_conc_b
953
nd_conc_m
865.6666667
nd_conc_mean
692
nd_conc_t
17.37395952
nd_cv
31-Oct-22
nd_date
31
nd_days
1
nd_success
Embiotoca jacksoni
http://purl.obolibrary.org/obo/NCBITaxon_100190
organism
not applicable
phenotype
19.6812352
q_cv
10/31/22
q_date
31
q_days
61.2
q_total_ug
696
qbr_conc_b
666
qbr_conc_m
612
qbr_conc_mean
474
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
3 hr 15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_3w_SRE1
treatment
41
tube_number
63
tube_number