SAMN35061678
External Id
Salk
INSDC center name
2023-06-30T00:51:09.800Z
INSDC first public
2023-06-30T00:51:09.800Z
INSDC last update
SRS17636287
INSDC secondary accession
live
INSDC status
L001-794
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636287
SRA accession
1
SRE
-15.1428988
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Kazu_090722_RNAlater_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Oct-22
extraction_date
49.2
femto_100k_1M
10.3
femto_10k_25k
3.5
femto_1_10k
100.2
femto_1_1M
24.5
femto_25k_50k
13.1
femto_50k_100k
62.3
femto_50k_1M
4.7617
femto_conc
2022-11-07a
femto_date
177337
femto_mean_bp
28
fish_FL_cm
32
fish_TL_cm
519.7
fish_mass_g
fish_3
fish_number
1
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Kazu090722
isolate
not applicable
isolation_source
32.75811 N 117.2449 W
lat_lon
32.75811
latitute
MB quivira jetty south
location
-117.2449
longitude
11639
nanoplot_N50
11.6
nanoplot_N50_kb
3514.3
nanoplot_mean_RL
14.2
nanoplot_mean_RQ
49906190
nanoplot_total_bases
49.9
nanoplot_total_bases_Mb
14201
nanoplot_total_reads
2.29
nd_260230_b
2.21
nd_260230_m
2.273333333
nd_260230_mean
2.32
nd_260230_t
1.81
nd_260280_b
1.76
nd_260280_m
1.8
nd_260280_mean
1.83
nd_260280_t
991
nd_conc_b
704
nd_conc_m
723
nd_conc_mean
474
nd_conc_t
35.8261639
nd_cv
14-Oct-22
nd_date
-5
nd_days
1
nd_success
Kyphosus azureus
http://purl.obolibrary.org/obo/NCBITaxon_2838349
organism
not applicable
phenotype
29.85431696
q_cv
10/14/22
q_date
-5
q_days
104.2
q_total_ug
1100
qbr_conc_b
1320
qbr_conc_m
1042
qbr_conc_mean
706
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
2 hr 45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_6w_SRE1
treatment
39
tube_number
61
tube_number