SAMN36071573
External Id
University of Miami
INSDC center name
2023-06-29T00:00:00Z
INSDC first public
2023-06-29T13:28:30.977Z
INSDC last update
SRS18103514
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS18103514
SRA accession
University of Miami
collected_by
2020-12-02
collection_date
Babler-13461-013-ARTIC_S45_L001_R1_001.fastq.gz
filename
Babler-13461-013-ARTIC_S45_L001_R2_001.fastq.gz
filename2
Babler-13461-013-ARTIC_S45_L002_R1_001.fastq.gz
filename3
Babler-13461-013-ARTIC_S45_L002_R2_001.fastq.gz
filename4
USA: Florida
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
detection of target by RT PCR or ddPCR
purpose_of_ww_sequencing
WG0S-201202
sample_id
University of Miami
sequenced_by[1]
Bio-Rad/admin
sequenced_by[2]
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
SARS
ww_endog_control_1
3646.125
ww_endog_control_1_conc
V2G-qPCR
ww_endog_control_1_protocol
copies/L
ww_endog_control_1_units
copies/L
ww_endog_control_2_units
0
ww_flow
7.3
ww_ph
831
ww_population
24
ww_sample_duration
raw wastewater
ww_sample_matrix
0
ww_sample_salinity
college or university
ww_sample_site
grab
ww_sample_type
FL
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
11886.75
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
26.415
ww_surv_target_1_extract
count
ww_surv_target_1_extract_unit
NC
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
V2G-qPCR
ww_surv_target_1_protocol
copies/L
ww_surv_target_2_conc_unit
count
ww_surv_target_2_extract_unit
21.6
ww_temperature