SAMN35061738
External Id
Salk
INSDC center name
2023-06-30T00:54:51.987Z
INSDC first public
2023-06-30T00:54:51.987Z
INSDC last update
SRS17636360
INSDC secondary accession
live
INSDC status
L001-781
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636360
SRA accession
1
SRE
-18.88948787
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1445
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Spol_091222_RNAlater_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
52.9
femto_100k_1M
5.4
femto_10k_25k
3.1
femto_1_10k
100.9
femto_1_1M
24.9
femto_25k_50k
15.1
femto_50k_100k
68
femto_50k_1M
1.1274
femto_conc
2022-11-09a
femto_date
133845
femto_mean_bp
17.2
fish_FL_cm
17.4
fish_TL_cm
38.8
fish_mass_g
fish_2
fish_number
10
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Spol091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
15046
nanoplot_N50
15
nanoplot_N50_kb
7442.6
nanoplot_mean_RL
16
nanoplot_mean_RQ
62763186
nanoplot_total_bases
62.8
nanoplot_total_bases_Mb
8433
nanoplot_total_reads
2.34
nd_260230_b
2.29
nd_260230_m
2.31
nd_260230_mean
2.3
nd_260230_t
1.86
nd_260280_b
1.84
nd_260280_m
1.85
nd_260280_mean
1.85
nd_260280_t
660
nd_conc_b
600
nd_conc_m
591
nd_conc_mean
513
nd_conc_t
12.50627918
nd_cv
14-Oct-22
nd_date
11
nd_days
1
nd_success
Seriphus politus
http://purl.obolibrary.org/obo/NCBITaxon_515231
organism
not applicable
phenotype
15.8110088
q_cv
10/14/22
q_date
11
q_days
86.6
q_total_ug
950
qbr_conc_b
940
qbr_conc_m
866
qbr_conc_mean
708
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_3w_SRE1
treatment
48
tube_number
32
tube_number