NA
Additional.info.affecting.microbiome..M3...Biospecimen.
150001-200000
Annual.household.income..Biospecimen.
False
Anti.infective..Biospecimen.
NA
Autism.spectrum.disorder..Biospecimen.
0.0565
Average.conc..Extract.
NA
Batch..OmicsFileSet.
True
Behavior.video.submitted..M3...Biospecimen.
B18016305
Biospecimen.Barcode
2018-10-31T00:00:00
Biospecimen.Date.Collected
NA
Biospecimen.Description
190634
Biospecimen.ID
M3_032_P2_N_V1
Biospecimen.Name
0.1
Biospecimen.consumption
grams
Biospecimen.consumption.unit
Box 39_D04_D05
Biospecimen.location..Extract.
NA
Biospecimen.mass
NA
Biospecimen.mass.unit
False
Born.by.caesarian.section..Biospecimen.
False
Born.prematurely..Biospecimen.
NA
Bread..consumption.frequency...longitudinal...Biospecimen.
NA
Childhood.behavioral.development.finding..Biospecimen.
0.056
Conc1..Extract.
0.057
Conc2..Extract.
False
Constipation..Biospecimen.
NA
Conversation.ability..Biospecimen.
Several times weekly
Dairy..consumption.frequency...Biospecimen.
NA
Dairy..consumption.frequency...longitudinal...Biospecimen.
True
Diarrhea..Biospecimen.
Mother's milk diet
Diet.during.infancy..Biospecimen.
NA
Dietary.fat.and.oil..consumption.frequency...longitudinal...Biospecimen.
Omnivorous diet
Dietary.regime..Biospecimen.
False
Dietary.restrictions..M3...Biospecimen.
NA
Dietary.restrictions.details..M3...Biospecimen.
False
Dietary.supplement..Biospecimen.
False
Environmental.tobacco.smoke.exposure..Biospecimen.
NA
Explain.how.you.collected.stool.sample..M3...Biospecimen.
SAMN31514882
External Id
Z18013007
Extract.Barcode
NA
Extract.Date.Collected
198901
Extract.ID
NA
Extract.Name
11.3
Extract.concentration
ng/microliter
Extract.concentration.unit
NA
Extract.consumption
NA
Extract.consumption.unit
100
Extract.volume
uL
Extract.volume.unit
NA
Extraction.Protocol.description
Glass
Extraction.Protocol.disruption_bead_type
600
Extraction.Protocol.disruption_duration
1750
Extraction.Protocol.disruption_intensity
NA
Extraction.Protocol.disruption_temperature
2018-05-10T18:01:55.521Z
Extraction.Protocol.dtstamp
gDNA
Extraction.Protocol.extract_type
MagAttract PowerMicrobiome DNA/RNA KF
Extraction.Protocol.extraction_kit
RNAse-Free Water
Extraction.Protocol.final_buffer
316
Extraction.Protocol.id
MAD LAB High Throughput Extraction of DNA using the MagAttract PowerMicrobiome DNA/RNA KF Kit
Extraction.Protocol.name
NA
Extraction.Protocol.notes
100
Extraction.Protocol.nucleic_acid_eluted_volume
452
Extraction.Protocol.protocol_id
Magnetic Beads
Extraction.Protocol.purification_method
-20
Extraction.Protocol.storage_temperature
24
Extraction.Protocol.user_id
KF0059
Extraction.batch.ID..Extract.
NA
Extraction.kit.lot.number..Extract.
NA
Eye.contact.finding..Biospecimen.
32
Family.group.ID..Biospecimen.
Weekly
Fermented.vegetable..consumption.frequency...Biospecimen.
False
Fever..Biospecimen.
False
Flu.like.symptoms..Biospecimen.
Not in past year
Flu.shot.in.the.last..M3...Biospecimen.
NA
Flu.shot.in.the.last..MFlu.shot.in.the.last..M3...Biospecimen.
NA
Foreign.travel.within.past.months..Biospecimen.
NA
Frequency.of.interaction.with.pet.s...Biospecimen.
Several times weekly
Fruit..consumption.frequency...Biospecimen.
NA
Fruit..consumption.frequency...longitudinal...Biospecimen.
Tends to have normal bowel function
Functional.bowel.finding..Biospecimen.
False
GI.issues.one.month.ago..M3...Biospecimen.
False
GI.issues.this.week..M3...Biospecimen.
False
GI.issues.three.months.ago..M3...Biospecimen.
False
GI.issues.two.months.ago..M3...Biospecimen.
False
GI.issues.two.weeks.ago..M3...Biospecimen.
False
GI.symptoms.within.3.months..M3...Biospecimen.
NA
Gastrointestinal.problems..M3...Biospecimen.
NA
Gestational.age..Biospecimen.
False
Gluten.allergy..Biospecimen.
9508
Host.ID
032_N
Host.Name
Control (disease status)
Host.disease.status..Biospecimen.
NA
Host.interaction.with.pets..Biospecimen.
Oregon State University
INSDC center name
2023-07-01T00:00:00Z
INSDC first public
2023-07-01T13:44:50.276Z
INSDC last update
SRS15613502
INSDC secondary accession
live
INSDC status
NA
Imitation.behavior..Biospecimen.
False
Indoors.pet..Biospecimen.
NA
Indoors.pets..Biospecimen.
NA
LR.L2.2.Video.classifier.score..M3...Biospecimen.
False
Lactose.intolerance..Biospecimen.
NA
Language.ability.and.use..Biospecimen.
NA
Length.of.recent.foreign.travel..Biospecimen.
L18014857
Library.Barcode
NA
Library.Date.Collected
199108
Library.ID
NA
Library.Name
5
Library.concentration
ng/uL
Library.concentration.unit
NA
Library.mass
NA
Library.mass.unit
3.926701571
Library.volume
uL
Library.volume.unit
C06
Location.on.Extraction.Plate..Extract.
Several times weekly
Meals.prepared.at.home..consumption.frequency...Biospecimen.
Rarely
Meat..consumption.frequency...Biospecimen.
NA
Meats.and.seafood..consumption.frequency...longitudinal...Biospecimen.
3
Minimum.time.since.antibiotics..Biospecimen.
NA
Mobile.Autism.Risk.Assessment.Score..Biospecimen.
NA
Most.recent.GI.episode.symptoms..M3...Biospecimen.
True
Multivitamin..Biospecimen.
Human
NCBI submission model
Human.1.0
NCBI submission package
503
Natural.father.current.age..months...Biospecimen.
496
Natural.mother.current.age..months...Biospecimen.
032_A
Natural.sibling.included.in.present.study..Biospecimen.
False
Non.celiac.gluten.sensitivity..Biospecimen.
5
Normalized.concentration..Extract.
0
Number.of.pet.birds..Biospecimen.
0
Number.of.pet.cats..Biospecimen.
0
Number.of.pet.dogs..Biospecimen.
0
Number.of.pet.fish..Biospecimen.
0
Number.of.pet.horses..Biospecimen.
0
Number.of.pet.reptiles..Biospecimen.
0
Number.of.roommates..Biospecimen.
Several times weekly
Olive.oil.used.in.cooking..M3...Biospecimen.
L18014857_M05416_63_000000000-C26N9
OmicsFileSet.Barcode
199679
OmicsFileSet.ID
L18014857_M05416_63_000000000-C26N9
OmicsFileSet.Name
False
Other.GI.symptoms..M3...Biospecimen.
False
Other.symptoms.this.week..M3...Biospecimen.
False
Outdoors.pet..Biospecimen.
NA
Outdoors.pets..Biospecimen.
NA
PCR.Protocol.BSA_final_conc
NA
PCR.Protocol.KCl_final_conc
NA
PCR.Protocol.MgCl2_final_conc
NA
PCR.Protocol.MgSO4_final_conc
NA
PCR.Protocol.Tris_HCl_final_conc
NA
PCR.Protocol.Tris_SO4_final_conc
Q5 Hot Start High-Fidelity 2X Master Mix
PCR.Protocol.amp_polymerase
NA
PCR.Protocol.amplicon_length
NA
PCR.Protocol.amplification_target
NA
PCR.Protocol.cycle_annealing_duration
NA
PCR.Protocol.cycle_annealing_method
NA
PCR.Protocol.cycle_annealing_temp
20
PCR.Protocol.cycle_count
NA
PCR.Protocol.cycle_denaturation_duration
NA
PCR.Protocol.cycle_denaturation_temp
NA
PCR.Protocol.cycle_extension_duration
NA
PCR.Protocol.cycle_extension_temp
NA
PCR.Protocol.dATP_final_conc
NA
PCR.Protocol.dCTP_final_conc
NA
PCR.Protocol.dGTP_final_conc
NA
PCR.Protocol.dTTP_final_conc
NA
PCR.Protocol.dUTP_final_conc
NA
PCR.Protocol.denaturation_duration_initial
NA
PCR.Protocol.denaturation_temp_initial
NA
PCR.Protocol.description
2018-06-04T17:32:01.019Z
PCR.Protocol.dtstamp
NA
PCR.Protocol.extension_duration_final
NA
PCR.Protocol.extension_temp
NA
PCR.Protocol.extension_temp_duration
NA
PCR.Protocol.extension_temp_final
NA
PCR.Protocol.gelatin_final_conc
575
PCR.Protocol.id
MAD LAB 16S V4 Library Preparation (20 cycles)
PCR.Protocol.name
NA
PCR.Protocol.other_additives
NA
PCR.Protocol.pcr_buffer_pH
AMPure XP
PCR.Protocol.pcr_clean_up_kits
Bead
PCR.Protocol.pcr_clean_up_methods
NA
PCR.Protocol.pcr_kit
50
PCR.Protocol.pcr_volume
NA
PCR.Protocol.pcr_water
NA
PCR.Protocol.pmid
NA
PCR.Protocol.polymerase_units
NA
PCR.Protocol.primer_fwd_seq
NA
PCR.Protocol.primer_rev_seq
463
PCR.Protocol.protocol_id
PicoGreen
PCR.Protocol.quantification_kit
V4
PCR.Protocol.region
NA
PCR.Protocol.reverse_primer_final_conc
NA
PCR.Protocol.tail_duration
NA
PCR.Protocol.tail_polymerase
NA
PCR.Protocol.tail_temp
NA
PCR.Protocol.themocycler
NA
PCR.Protocol.triton_X_100_final_conc
24
PCR.Protocol.user_id
False
Pet.bird..Biospecimen.
False
Pet.cat..Biospecimen.
False
Pet.dog..Biospecimen.
False
Pet.fish..Biospecimen.
False
Pet.horse..Biospecimen.
False
Pet.reptile..Biospecimen.
False
Pets.in.home..Biospecimen.
NA
Pica.disease..Biospecimen.
NA
Picks.up.objects.to.show.to.others..Biospecimen.
NA
PicoGreen.kit.lot.number..Extract.
NA
Plays.imaginatively.when.alone..Biospecimen.
NA
Plays.imaginatively.with.others..Biospecimen.
NA
Plays.in.a.group.with.others..Biospecimen.
NA
Pooled.library.batch.ID..Sequencing...OmicsFileSet.
Daily
Probiotic..consumption.frequency...Biospecimen.
NA
Problems.collecting.stool.sample..M3...Biospecimen.
NA
Quant.Plate.Location1..Extract.
NA
Quant.Plate.Location2..Extract.
NA
Quant.Plate.Number..Extract.
Unknown racial group
Racial.group..Biospecimen.
Several times weekly
Ready.to.eat.meals..consumption.frequency...Biospecimen.
NA
Recent.anxiety..caretaker.reported...Biospecimen.
NA
Recently.ill..Biospecimen.
NA
Red.meat..consumption.frequency...Biospecimen.
NA
Repetitive.motion..Biospecimen.
NA
Response.to.typical.sounds..Biospecimen.
Several times weekly
Restaurant.prepared.meals..consumption.frequency...Biospecimen.
SRS15613502
SRA accession
Several times weekly
Seafood..consumption.frequency...Biospecimen.
NA
Self.injurious.behavior.finding..Biospecimen.
SG Soil Lab Sequencing Protocol
Sequencing.Protocol.description
2017-06-20T22:06:22.526Z
Sequencing.Protocol.dtstamp
2
Sequencing.Protocol.id
Illumina MiSeq
Sequencing.Protocol.instrument_model
7
Sequencing.Protocol.loading_lib_concentration
pmol/L
Sequencing.Protocol.loading_lib_concentration_unit
5134
Sequencing.Protocol.loading_lib_concentration_unit_ontology_id
MiSeq_V4_v1.0
Sequencing.Protocol.name
Bioanalyzer is used to asses quality of pooled library. PhiX control spike-in is 20-15% of final load.
Sequencing.Protocol.notes
359
Sequencing.Protocol.protocol_id
251
Sequencing.Protocol.read_length
MiSeq Reagent Kit v3 (600 cycle)
Sequencing.Protocol.sequencing_kit
4
Sequencing.Protocol.starting_lib_concentration
nmol/L
Sequencing.Protocol.starting_lib_concentration_unit
3135
Sequencing.Protocol.starting_lib_concentration_unit_ontology_id
10
Sequencing.Protocol.user_id
M05416_63_000000000-C26N9
Sequencing.run.ID..OmicsFileSet.
False
Shares.bed.with.pet..Biospecimen.
NA
Sleep.pattern.finding..Biospecimen.
False
Small.pet.rodent..Biospecimen.
Drinking water from city
Source.of.drinking.water..Biospecimen.
None
Specific.food.allergy..Biospecimen.
HR
Standard.Curve..Extract.
NA
Starchy.food..consumption.frequency...longitudinal...Biospecimen.
1
Stool.frequency..Biospecimen.
NA
Stool.sample.challenges.explained..M3...Biospecimen.
NA
Stool.sample.collection.method..M3...Biospecimen.
Several times weekly
Sugary.food..consumption.frequency...Biospecimen.
Weekly
Sweetened.drink..consumption.frequency...Biospecimen.
NA
Toilet.cover..M3...Biospecimen.
NA
Toilet.trained..Biospecimen.
100
Total.Volume.of.Sample..Extract.
NA
Travel.outside.US..notes...Biospecimen.
NA
Travel.to.country..Biospecimen.
NA
Understands.speech..Biospecimen.
Weekly
Vegetable..consumption.frequency...Biospecimen.
NA
Vegetable..consumption.frequency...longitudinal...Biospecimen.
Never
Vitamin.B.complex.supplement..consumption.frequency...Biospecimen.
Weekly
Vitamin.D..consumption.frequency...Biospecimen.
44.24778761
Volume.DNA.to.add..Extract.
55.75221239
Volume.H2O.to.add..Extract.
Weekly
Whole.grain..consumption.frequency...Biospecimen.
Timepoint 2
Within.study.sampling.date..Biospecimen.
73
age
months
age_units
not applicable
biomaterial_provider
not applicable
isolate
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
N
phenotype
male
sex
stool
tissue
Human sample from Homo sapiens
title