SAMN35061580
External Id
Salk
INSDC center name
2023-06-30T00:51:09.207Z
INSDC first public
2023-06-30T00:51:09.207Z
INSDC last update
SRS17636370
INSDC secondary accession
live
INSDC status
L001-681
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636370
SRA accession
0
SRE
-43.75526006
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1400
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Cpun_090922_95etoh_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
21-Oct-22
extraction_date
23.2
femto_100k_1M
14.5
femto_10k_25k
9.2
femto_1_10k
100.4
femto_1_1M
34.1
femto_25k_50k
20
femto_50k_100k
43.2
femto_50k_1M
2.1535
femto_conc
2022-11-07a
femto_date
87398
femto_mean_bp
16.6
fish_FL_cm
18.5
fish_TL_cm
82.6
fish_mass_g
fish_6
fish_number
4
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Cpun090922
isolate
not applicable
isolation_source
32.76138 N 117.245 W
lat_lon
32.76138
latitute
MB jetty North
location
-117.245
longitude
11882
nanoplot_N50
11.9
nanoplot_N50_kb
3924.9
nanoplot_mean_RL
16.7
nanoplot_mean_RQ
64312827
nanoplot_total_bases
64.3
nanoplot_total_bases_Mb
16386
nanoplot_total_reads
2.35
nd_260230_b
2.19
nd_260230_m
2.253333333
nd_260230_mean
2.22
nd_260230_t
1.86
nd_260280_b
1.81
nd_260280_m
1.83
nd_260280_mean
1.82
nd_260280_t
835
nd_conc_b
616
nd_conc_m
703.6666667
nd_conc_mean
660
nd_conc_t
16.46321587
nd_cv
5-Oct-22
nd_date
-16
nd_days
1
nd_success
Chromis punctipinnis
http://purl.obolibrary.org/obo/NCBITaxon_231457
organism
not applicable
phenotype
14.93906986
q_cv
10/14/22
q_date
-7
q_days
83.86666667
q_total_ug
982
qbr_conc_b
750
qbr_conc_m
838.6666667
qbr_conc_mean
784
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
1 hr 25 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_6w_SRE0
treatment
25
tube_number
80
tube_number