SAMN35061646
External Id
Salk
INSDC center name
2023-06-30T00:51:09.633Z
INSDC first public
2023-06-30T00:51:09.633Z
INSDC last update
SRS17636274
INSDC secondary accession
live
INSDC status
L001-769
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636274
SRA accession
1
SRE
9.771273023
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_95etoh_4C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
51
femto_100k_1M
8.8
femto_10k_25k
7.3
femto_1_10k
101.7
femto_1_1M
21.9
femto_25k_50k
13.2
femto_50k_100k
64.2
femto_50k_1M
0.5456
femto_conc
2022-11-07a
femto_date
116153
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
31051
nanoplot_N50
31.1
nanoplot_N50_kb
14835.8
nanoplot_mean_RL
17.3
nanoplot_mean_RQ
31778185
nanoplot_total_bases
31.8
nanoplot_total_bases_Mb
2142
nanoplot_total_reads
1.92
nd_260230_b
1.7
nd_260230_m
1.823333333
nd_260230_mean
1.85
nd_260230_t
1.69
nd_260280_b
1.84
nd_260280_m
1.806666667
nd_260280_mean
1.89
nd_260280_t
407
nd_conc_b
32.9
nd_conc_m
157.5333333
nd_conc_mean
32.7
nd_conc_t
137.1420824
nd_cv
4-Oct-22
nd_date
1
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
127.3453447
q_cv
10/14/22
q_date
11
q_days
15.78666667
q_total_ug
390
qbr_conc_b
40.8
qbr_conc_m
157.8666667
qbr_conc_mean
42.8
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_3w_SRE1
treatment
58
tube_number
9
tube_number