SAMN35061747
External Id
Salk
INSDC center name
2023-06-30T00:51:10.323Z
INSDC first public
2023-06-30T00:51:10.323Z
INSDC last update
SRS17636338
INSDC secondary accession
live
INSDC status
L001-684
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636338
SRA accession
0
SRE
74.08057378
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_95etoh_4C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Sep-22
extraction_date
18.2
femto_100k_1M
26.9
femto_10k_25k
17.6
femto_1_10k
100.2
femto_1_1M
29.7
femto_25k_50k
8.2
femto_50k_100k
26.4
femto_50k_1M
5.0749
femto_conc
2022-11-07a
femto_date
73663
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
13106
nanoplot_N50
13.1
nanoplot_N50_kb
3109.4
nanoplot_mean_RL
15.8
nanoplot_mean_RQ
41967711
nanoplot_total_bases
42
nanoplot_total_bases_Mb
13497
nanoplot_total_reads
2.19
nd_260230_b
2.31
nd_260230_m
2.266666667
nd_260230_mean
2.3
nd_260230_t
1.86
nd_260280_b
1.85
nd_260280_m
1.856666667
nd_260280_mean
1.86
nd_260280_t
452
nd_conc_b
445
nd_conc_m
431
nd_conc_mean
396
nd_conc_t
7.079418238
nd_cv
5-Oct-22
nd_date
16
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
10.14423544
q_cv
10/14/22
q_date
25
q_days
48.86666667
q_total_ug
542
qbr_conc_b
480
qbr_conc_m
488.6666667
qbr_conc_mean
444
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_1w_SRE0
treatment
25
tube_number
30
tube_number