SAMN35061735
External Id
Salk
INSDC center name
2023-06-30T00:54:51.843Z
INSDC first public
2023-06-30T00:54:51.843Z
INSDC last update
SRS17636333
INSDC secondary accession
live
INSDC status
L001-636
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636333
SRA accession
0
SRE
-3.934446738
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1445
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Spol_091222_RNAlater_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Sep-22
extraction_date
24.7
femto_100k_1M
9.3
femto_10k_25k
5
femto_1_10k
100.4
femto_1_1M
43.5
femto_25k_50k
18.4
femto_50k_100k
43.1
femto_50k_1M
2.3738
femto_conc
2022-11-07a
femto_date
108049
femto_mean_bp
17.2
fish_FL_cm
17.4
fish_TL_cm
38.8
fish_mass_g
fish_2
fish_number
10
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Spol091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
15987
nanoplot_N50
16
nanoplot_N50_kb
5677.3
nanoplot_mean_RL
16.6
nanoplot_mean_RQ
24418111
nanoplot_total_bases
24.4
nanoplot_total_bases_Mb
4301
nanoplot_total_reads
2.57
nd_260230_b
2.55
nd_260230_m
2.48
nd_260230_mean
2.32
nd_260230_t
1.89
nd_260280_b
1.88
nd_260280_m
1.876666667
nd_260280_mean
1.86
nd_260280_t
679
nd_conc_b
750
nd_conc_m
649.3333333
nd_conc_mean
519
nd_conc_t
18.22222858
nd_cv
31-Oct-22
nd_date
42
nd_days
1
nd_success
Seriphus politus
http://purl.obolibrary.org/obo/NCBITaxon_515231
organism
not applicable
phenotype
33.42130258
q_cv
10/31/22
q_date
42
q_days
33.26666667
q_total_ug
452
qbr_conc_b
314
qbr_conc_m
332.6666667
qbr_conc_mean
232
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_1w_SRE0
treatment
18
tube_number
74
tube_number