Always either constipation or diarrhea. No normal bowel movements except when switching from constipation to diarrhea or vice versa. Mucousy BMs when constipated (that I can see). Wicked sweet tooth. Very irritable little guy. But not autistic.
Additional.info.affecting.microbiome..M3...Biospecimen.
80001-150001
Annual.household.income..Biospecimen.
False
Anti.infective..Biospecimen.
NA
Autism.spectrum.disorder..Biospecimen.
NA
Average.conc..Extract.
batch123_2
Batch..OmicsFileSet.
True
Behavior.video.submitted..M3...Biospecimen.
B18012336
Biospecimen.Barcode
2018-01-18T00:00:00
Biospecimen.Date.Collected
Matched with metadata entry NT_T2_Family_099
Biospecimen.Description
152775
Biospecimen.ID
M3_099_P2_N_V1
Biospecimen.Name
0.25
Biospecimen.consumption
gram
Biospecimen.consumption.unit
NA
Biospecimen.location..Extract.
NA
Biospecimen.mass
NA
Biospecimen.mass.unit
False
Born.by.caesarian.section..Biospecimen.
False
Born.prematurely..Biospecimen.
7-10 meals per week
Bread..consumption.frequency...longitudinal...Biospecimen.
NA
Childhood.behavioral.development.finding..Biospecimen.
NA
Conc1..Extract.
NA
Conc2..Extract.
False
Constipation..Biospecimen.
NA
Conversation.ability..Biospecimen.
Rarely
Dairy..consumption.frequency...Biospecimen.
3-4 meals per week
Dairy..consumption.frequency...longitudinal...Biospecimen.
False
Diarrhea..Biospecimen.
Mother's milk diet
Diet.during.infancy..Biospecimen.
3-4 meals per week
Dietary.fat.and.oil..consumption.frequency...longitudinal...Biospecimen.
Omnivorous diet
Dietary.regime..Biospecimen.
True
Dietary.restrictions..M3...Biospecimen.
Artificial colors, gluten and casein free, like us all.
Dietary.restrictions.details..M3...Biospecimen.
True
Dietary.supplement..Biospecimen.
False
Environmental.tobacco.smoke.exposure..Biospecimen.
NA
Explain.how.you.collected.stool.sample..M3...Biospecimen.
SAMN31514600
External Id
Z18008909
Extract.Barcode
NA
Extract.Date.Collected
154022
Extract.ID
NA
Extract.Name
20.99
Extract.concentration
ng/uL
Extract.concentration.unit
NA
Extract.consumption
NA
Extract.consumption.unit
100
Extract.volume
microliter
Extract.volume.unit
NA
Extraction.Protocol.description
Glass
Extraction.Protocol.disruption_bead_type
600
Extraction.Protocol.disruption_duration
1750
Extraction.Protocol.disruption_intensity
NA
Extraction.Protocol.disruption_temperature
2018-05-10T18:01:55.521Z
Extraction.Protocol.dtstamp
gDNA
Extraction.Protocol.extract_type
MagAttract PowerMicrobiome DNA/RNA KF
Extraction.Protocol.extraction_kit
RNAse-Free Water
Extraction.Protocol.final_buffer
316
Extraction.Protocol.id
MAD LAB High Throughput Extraction of DNA using the MagAttract PowerMicrobiome DNA/RNA KF Kit
Extraction.Protocol.name
NA
Extraction.Protocol.notes
100
Extraction.Protocol.nucleic_acid_eluted_volume
452
Extraction.Protocol.protocol_id
Magnetic Beads
Extraction.Protocol.purification_method
-20
Extraction.Protocol.storage_temperature
24
Extraction.Protocol.user_id
NA
Extraction.batch.ID..Extract.
NA
Extraction.kit.lot.number..Extract.
NA
Eye.contact.finding..Biospecimen.
99
Family.group.ID..Biospecimen.
Weekly
Fermented.vegetable..consumption.frequency...Biospecimen.
False
Fever..Biospecimen.
False
Flu.like.symptoms..Biospecimen.
Not in past year
Flu.shot.in.the.last..M3...Biospecimen.
NA
Flu.shot.in.the.last..MFlu.shot.in.the.last..M3...Biospecimen.
3
Foreign.travel.within.past.months..Biospecimen.
NA
Frequency.of.interaction.with.pet.s...Biospecimen.
Weekly
Fruit..consumption.frequency...Biospecimen.
3-4 meals per week
Fruit..consumption.frequency...longitudinal...Biospecimen.
Tends to have constipation
Functional.bowel.finding..Biospecimen.
False
GI.issues.one.month.ago..M3...Biospecimen.
True
GI.issues.this.week..M3...Biospecimen.
False
GI.issues.three.months.ago..M3...Biospecimen.
False
GI.issues.two.months.ago..M3...Biospecimen.
False
GI.issues.two.weeks.ago..M3...Biospecimen.
True
GI.symptoms.within.3.months..M3...Biospecimen.
NA
Gastrointestinal.problems..M3...Biospecimen.
NA
Gestational.age..Biospecimen.
False
Gluten.allergy..Biospecimen.
9575
Host.ID
099_N
Host.Name
Control (disease status)
Host.disease.status..Biospecimen.
NA
Host.interaction.with.pets..Biospecimen.
Oregon State University
INSDC center name
2023-07-01T00:00:00Z
INSDC first public
2023-07-01T13:43:45.222Z
INSDC last update
SRS15613550
INSDC secondary accession
live
INSDC status
NA
Imitation.behavior..Biospecimen.
False
Indoors.pet..Biospecimen.
NA
Indoors.pets..Biospecimen.
NA
LR.L2.2.Video.classifier.score..M3...Biospecimen.
True
Lactose.intolerance..Biospecimen.
NA
Language.ability.and.use..Biospecimen.
21
Length.of.recent.foreign.travel..Biospecimen.
L18007707
Library.Barcode
NA
Library.Date.Collected
156018
Library.ID
NA
Library.Name
14133.9
Library.concentration
ng/uL
Library.concentration.unit
NA
Library.mass
NA
Library.mass.unit
50
Library.volume
microliter
Library.volume.unit
NA
Location.on.Extraction.Plate..Extract.
Daily
Meals.prepared.at.home..consumption.frequency...Biospecimen.
Several times weekly
Meat..consumption.frequency...Biospecimen.
7-10 meals per week
Meats.and.seafood..consumption.frequency...longitudinal...Biospecimen.
3
Minimum.time.since.antibiotics..Biospecimen.
NA
Mobile.Autism.Risk.Assessment.Score..Biospecimen.
Diarrhea & Constipation & Abdominal bloating & Mucus in stool & Pain (symptom)
Most.recent.GI.episode.symptoms..M3...Biospecimen.
False
Multivitamin..Biospecimen.
Human
NCBI submission model
Human.1.0
NCBI submission package
572
Natural.father.current.age..months...Biospecimen.
533
Natural.mother.current.age..months...Biospecimen.
099_A
Natural.sibling.included.in.present.study..Biospecimen.
False
Non.celiac.gluten.sensitivity..Biospecimen.
NA
Normalized.concentration..Extract.
0
Number.of.pet.birds..Biospecimen.
0
Number.of.pet.cats..Biospecimen.
0
Number.of.pet.dogs..Biospecimen.
0
Number.of.pet.fish..Biospecimen.
0
Number.of.pet.horses..Biospecimen.
0
Number.of.pet.reptiles..Biospecimen.
0
Number.of.roommates..Biospecimen.
Weekly
Olive.oil.used.in.cooking..M3...Biospecimen.
L18007707_M02273_20_000000000_BTF24
OmicsFileSet.Barcode
157180
OmicsFileSet.ID
_O1
OmicsFileSet.Name
False
Other.GI.symptoms..M3...Biospecimen.
False
Other.symptoms.this.week..M3...Biospecimen.
False
Outdoors.pet..Biospecimen.
NA
Outdoors.pets..Biospecimen.
0
PCR.Protocol.BSA_final_conc
0
PCR.Protocol.KCl_final_conc
0
PCR.Protocol.MgCl2_final_conc
0
PCR.Protocol.MgSO4_final_conc
0
PCR.Protocol.Tris_HCl_final_conc
0
PCR.Protocol.Tris_SO4_final_conc
Q5 HotStart High Fidelity DNA Polymerase
PCR.Protocol.amp_polymerase
0
PCR.Protocol.amplicon_length
NA
PCR.Protocol.amplification_target
30
PCR.Protocol.cycle_annealing_duration
static
PCR.Protocol.cycle_annealing_method
50
PCR.Protocol.cycle_annealing_temp
20
PCR.Protocol.cycle_count
10
PCR.Protocol.cycle_denaturation_duration
98
PCR.Protocol.cycle_denaturation_temp
30
PCR.Protocol.cycle_extension_duration
72
PCR.Protocol.cycle_extension_temp
200
PCR.Protocol.dATP_final_conc
200
PCR.Protocol.dCTP_final_conc
200
PCR.Protocol.dGTP_final_conc
200
PCR.Protocol.dTTP_final_conc
0
PCR.Protocol.dUTP_final_conc
30
PCR.Protocol.denaturation_duration_initial
98
PCR.Protocol.denaturation_temp_initial
NA
PCR.Protocol.description
2017-11-06T22:06:22.526Z
PCR.Protocol.dtstamp
600
PCR.Protocol.extension_duration_final
72
PCR.Protocol.extension_temp
30
PCR.Protocol.extension_temp_duration
72
PCR.Protocol.extension_temp_final
0
PCR.Protocol.gelatin_final_conc
553
PCR.Protocol.id
16S_V4_Library_Preparation
PCR.Protocol.name
NA
PCR.Protocol.other_additives
0
PCR.Protocol.pcr_buffer_pH
Agencourt Ampure XP Beads
PCR.Protocol.pcr_clean_up_kits
bead
PCR.Protocol.pcr_clean_up_methods
NEB Q5 HotStart High-Fidelity 2x Master Mix
PCR.Protocol.pcr_kit
25
PCR.Protocol.pcr_volume
NA
PCR.Protocol.pcr_water
0
PCR.Protocol.pmid
0
PCR.Protocol.polymerase_units
NA
PCR.Protocol.primer_fwd_seq
NA
PCR.Protocol.primer_rev_seq
373
PCR.Protocol.protocol_id
Invitrogen Quant-it PicoGreen dsDNA Assay kit
PCR.Protocol.quantification_kit
V4
PCR.Protocol.region
2.5
PCR.Protocol.reverse_primer_final_conc
0
PCR.Protocol.tail_duration
NA
PCR.Protocol.tail_polymerase
0
PCR.Protocol.tail_temp
Veriti Thermocycler (Applied Biosystems)
PCR.Protocol.themocycler
0
PCR.Protocol.triton_X_100_final_conc
1
PCR.Protocol.user_id
False
Pet.bird..Biospecimen.
False
Pet.cat..Biospecimen.
False
Pet.dog..Biospecimen.
False
Pet.fish..Biospecimen.
False
Pet.horse..Biospecimen.
False
Pet.reptile..Biospecimen.
False
Pets.in.home..Biospecimen.
NA
Pica.disease..Biospecimen.
NA
Picks.up.objects.to.show.to.others..Biospecimen.
NA
PicoGreen.kit.lot.number..Extract.
NA
Plays.imaginatively.when.alone..Biospecimen.
NA
Plays.imaginatively.with.others..Biospecimen.
NA
Plays.in.a.group.with.others..Biospecimen.
MS0039
Pooled.library.batch.ID..Sequencing...OmicsFileSet.
Never
Probiotic..consumption.frequency...Biospecimen.
False
Problems.collecting.stool.sample..M3...Biospecimen.
NA
Quant.Plate.Location1..Extract.
NA
Quant.Plate.Location2..Extract.
NA
Quant.Plate.Number..Extract.
Caucasian
Racial.group..Biospecimen.
Weekly
Ready.to.eat.meals..consumption.frequency...Biospecimen.
Elevated anxiety
Recent.anxiety..caretaker.reported...Biospecimen.
False
Recently.ill..Biospecimen.
NA
Red.meat..consumption.frequency...Biospecimen.
NA
Repetitive.motion..Biospecimen.
NA
Response.to.typical.sounds..Biospecimen.
Rarely
Restaurant.prepared.meals..consumption.frequency...Biospecimen.
SRS15613550
SRA accession
Weekly
Seafood..consumption.frequency...Biospecimen.
NA
Self.injurious.behavior.finding..Biospecimen.
SG Soil Lab Sequencing Protocol
Sequencing.Protocol.description
2017-06-20T22:06:22.526Z
Sequencing.Protocol.dtstamp
2
Sequencing.Protocol.id
Illumina MiSeq
Sequencing.Protocol.instrument_model
7
Sequencing.Protocol.loading_lib_concentration
pmol/L
Sequencing.Protocol.loading_lib_concentration_unit
5134
Sequencing.Protocol.loading_lib_concentration_unit_ontology_id
MiSeq_V4_v1.0
Sequencing.Protocol.name
Bioanalyzer is used to asses quality of pooled library. PhiX control spike-in is 20-15% of final load.
Sequencing.Protocol.notes
359
Sequencing.Protocol.protocol_id
251
Sequencing.Protocol.read_length
MiSeq Reagent Kit v3 (600 cycle)
Sequencing.Protocol.sequencing_kit
4
Sequencing.Protocol.starting_lib_concentration
nmol/L
Sequencing.Protocol.starting_lib_concentration_unit
3135
Sequencing.Protocol.starting_lib_concentration_unit_ontology_id
10
Sequencing.Protocol.user_id
M02273_20_000000000_BTF24
Sequencing.run.ID..OmicsFileSet.
False
Shares.bed.with.pet..Biospecimen.
NA
Sleep.pattern.finding..Biospecimen.
False
Small.pet.rodent..Biospecimen.
Drinking water is filtered
Source.of.drinking.water..Biospecimen.
Sweet potato
Specific.food.allergy..Biospecimen.
NA
Standard.Curve..Extract.
3-4 meals per week
Starchy.food..consumption.frequency...longitudinal...Biospecimen.
1
Stool.frequency..Biospecimen.
NA
Stool.sample.challenges.explained..M3...Biospecimen.
Sampled from diaper
Stool.sample.collection.method..M3...Biospecimen.
Daily
Sugary.food..consumption.frequency...Biospecimen.
Weekly
Sweetened.drink..consumption.frequency...Biospecimen.
NA
Toilet.cover..M3...Biospecimen.
False
Toilet.trained..Biospecimen.
NA
Total.Volume.of.Sample..Extract.
France, 3 weeks
Travel.outside.US..notes...Biospecimen.
France
Travel.to.country..Biospecimen.
NA
Understands.speech..Biospecimen.
Weekly
Vegetable..consumption.frequency...Biospecimen.
3-4 meals per week
Vegetable..consumption.frequency...longitudinal...Biospecimen.
Rarely
Vitamin.B.complex.supplement..consumption.frequency...Biospecimen.
Rarely
Vitamin.D..consumption.frequency...Biospecimen.
NA
Volume.DNA.to.add..Extract.
NA
Volume.H2O.to.add..Extract.
Weekly
Whole.grain..consumption.frequency...Biospecimen.
Timepoint 2
Within.study.sampling.date..Biospecimen.
47
age
months
age_units
not applicable
biomaterial_provider
not applicable
isolate
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
N
phenotype
male
sex
stool
tissue
Human sample from Homo sapiens
title