SAMN35061654
External Id
Salk
INSDC center name
2023-06-30T00:52:14.983Z
INSDC first public
2023-06-30T00:52:14.983Z
INSDC last update
SRS17636282
INSDC secondary accession
live
INSDC status
L001-771
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636282
SRA accession
1
SRE
-22.80132933
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_RNAlater_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
0
femto_100k_1M
0
femto_10k_25k
100.2
femto_1_10k
100.2
femto_1_1M
0
femto_25k_50k
0
femto_50k_100k
0
femto_50k_1M
5.382
femto_conc
2022-11-07a
femto_date
2819
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
9524
nanoplot_N50
9.5
nanoplot_N50_kb
5561.4
nanoplot_mean_RL
15.3
nanoplot_mean_RQ
16784424
nanoplot_total_bases
16.8
nanoplot_total_bases_Mb
3018
nanoplot_total_reads
2.28
nd_260230_b
2.22
nd_260230_m
2.25
nd_260230_mean
2.25
nd_260230_t
1.84
nd_260280_b
1.83
nd_260280_m
1.84
nd_260280_mean
1.85
nd_260280_t
875
nd_conc_b
853
nd_conc_m
847.3333333
nd_conc_mean
814
nd_conc_t
3.645824467
nd_cv
4-Oct-22
nd_date
1
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
0.967626149
q_cv
10/14/22
q_date
11
q_days
119.3333333
q_total_ug
1180
qbr_conc_b
1200
qbr_conc_m
1193.333333
qbr_conc_mean
1200
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_3w_SRE1
treatment
46
tube_number
4
tube_number