SAMN35061724
External Id
Salk
INSDC center name
2023-06-30T00:53:36.347Z
INSDC first public
2023-06-30T00:53:36.347Z
INSDC last update
SRS17636317
INSDC secondary accession
live
INSDC status
L001-780
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636317
SRA accession
1
SRE
4.060840867
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1445
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Spol_091222_95etoh_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
13.1
femto_100k_1M
28.4
femto_10k_25k
15.1
femto_1_10k
100.5
femto_1_1M
35.7
femto_25k_50k
8.6
femto_50k_100k
21.7
femto_50k_1M
1.7208
femto_conc
2022-11-08a
femto_date
55603
femto_mean_bp
17.2
fish_FL_cm
17.4
fish_TL_cm
38.8
fish_mass_g
fish_2
fish_number
10
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Spol091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
7252
nanoplot_N50
7.3
nanoplot_N50_kb
3525.4
nanoplot_mean_RL
16.3
nanoplot_mean_RQ
131313091
nanoplot_total_bases
131.3
nanoplot_total_bases_Mb
37248
nanoplot_total_reads
2.1
nd_260230_b
2.45
nd_260230_m
2.353333333
nd_260230_mean
2.51
nd_260230_t
1.86
nd_260280_b
1.88
nd_260280_m
1.88
nd_260280_mean
1.9
nd_260280_t
922
nd_conc_b
896
nd_conc_m
837
nd_conc_mean
693
nd_conc_t
14.98009701
nd_cv
31-Oct-22
nd_date
28
nd_days
1
nd_success
Seriphus politus
http://purl.obolibrary.org/obo/NCBITaxon_515231
organism
not applicable
phenotype
24.90574541
q_cv
10/31/22
q_date
28
q_days
59.06666667
q_total_ug
750
qbr_conc_b
562
qbr_conc_m
590.6666667
qbr_conc_mean
460
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_3w_SRE1
treatment
66
tube_number
54
tube_number