SAMN35061751
External Id
Salk
INSDC center name
2023-06-30T00:52:15.650Z
INSDC first public
2023-06-30T00:52:15.650Z
INSDC last update
SRS17636341
INSDC secondary accession
live
INSDC status
L001-690
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636341
SRA accession
0
SRE
0.964789
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_95etoh_4C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
26.6
femto_100k_1M
23.9
femto_10k_25k
20.9
femto_1_10k
100.7
femto_1_1M
22.4
femto_25k_50k
7.4
femto_50k_100k
34
femto_50k_1M
1.3304
femto_conc
2022-11-08a
femto_date
74371
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
26327
nanoplot_N50
26.3
nanoplot_N50_kb
8439.9
nanoplot_mean_RL
16.8
nanoplot_mean_RQ
58842690
nanoplot_total_bases
58.8
nanoplot_total_bases_Mb
6972
nanoplot_total_reads
2.41
nd_260230_b
2.41
nd_260230_m
2.413333333
nd_260230_mean
2.42
nd_260230_t
1.86
nd_260280_b
1.87
nd_260280_m
1.863333333
nd_260280_mean
1.86
nd_260280_t
273
nd_conc_b
267
nd_conc_m
262
nd_conc_mean
246
nd_conc_t
5.411239267
nd_cv
14-Oct-22
nd_date
-10
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
7.615851218
q_cv
10/14/22
q_date
-10
q_days
32.8
q_total_ug
348
qbr_conc_b
336
qbr_conc_m
328
qbr_conc_mean
300
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_6w_SRE0
treatment
56
tube_number
95
tube_number