SAMN35061733
External Id
Salk
INSDC center name
2023-06-30T00:54:51.770Z
INSDC first public
2023-06-30T00:54:51.770Z
INSDC last update
SRS17636339
INSDC secondary accession
live
INSDC status
L001-633
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636339
SRA accession
0
SRE
-23.30335816
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1445
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Spol_091222_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
25.8
femto_100k_1M
22.9
femto_10k_25k
9.4
femto_1_10k
100.3
femto_1_1M
36.4
femto_25k_50k
6
femto_50k_100k
31.8
femto_50k_1M
2.8256
femto_conc
2022-11-07a
femto_date
130049
femto_mean_bp
17.2
fish_FL_cm
17.4
fish_TL_cm
38.8
fish_mass_g
fish_2
fish_number
10
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Spol091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
14234
nanoplot_N50
14.2
nanoplot_N50_kb
3383
nanoplot_mean_RL
15.8
nanoplot_mean_RQ
24371430
nanoplot_total_bases
24.4
nanoplot_total_bases_Mb
7204
nanoplot_total_reads
2.2
nd_260230_b
2.34
nd_260230_m
2.296666667
nd_260230_mean
2.35
nd_260230_t
1.8
nd_260280_b
1.88
nd_260280_m
1.856666667
nd_260280_mean
1.89
nd_260280_t
473
nd_conc_b
174
nd_conc_m
271
nd_conc_mean
166
nd_conc_t
64.56931967
nd_cv
31-Oct-22
nd_date
11
nd_days
1
nd_success
Seriphus politus
http://purl.obolibrary.org/obo/NCBITaxon_515231
organism
not applicable
phenotype
112.0456629
q_cv
10/31/22
q_date
11
q_days
34.26666667
q_total_ug
786
qbr_conc_b
119
qbr_conc_m
342.6666667
qbr_conc_mean
123
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE0
treatment
80
tube_number
76
tube_number