SAMN35061623
External Id
Salk
INSDC center name
2023-06-30T00:52:14.797Z
INSDC first public
2023-06-30T00:52:14.797Z
INSDC last update
SRS17636377
INSDC secondary accession
live
INSDC status
L001-654
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636377
SRA accession
0
SRE
227.3499734
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1330
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Gnig_090722_95etoh_4C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
14-Sep-22
extraction_date
34.4
femto_100k_1M
11.7
femto_10k_25k
6.6
femto_1_10k
100.2
femto_1_1M
33.3
femto_25k_50k
14.5
femto_50k_100k
48.9
femto_50k_1M
5.6503
femto_conc
2022-11-07a
femto_date
149742
femto_mean_bp
17.8
fish_FL_cm
18.5
fish_TL_cm
128.3
fish_mass_g
fish_4
fish_number
2
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Gnig090722
isolate
not applicable
isolation_source
32.75879 N 117.2433 W
lat_lon
32.75879
latitute
MB quivira jetty south
location
-117.2433
longitude
3766
nanoplot_N50
3.8
nanoplot_N50_kb
1536.1
nanoplot_mean_RL
15.5
nanoplot_mean_RQ
1233744727
nanoplot_total_bases
1233.7
nanoplot_total_bases_Mb
803156
nanoplot_total_reads
2.28
nd_260230_b
2.27
nd_260230_m
2.266666667
nd_260230_mean
2.25
nd_260230_t
1.83
nd_260280_b
1.86
nd_260280_m
1.846666667
nd_260280_mean
1.85
nd_260280_t
1281
nd_conc_b
1168
nd_conc_m
1134.333333
nd_conc_mean
954
nd_conc_t
14.64113708
nd_cv
14-Oct-22
nd_date
30
nd_days
1
nd_success
Girella nigricans
http://purl.obolibrary.org/obo/NCBITaxon_214657
organism
not applicable
phenotype
31.39515813
q_cv
10/14/22
q_date
30
q_days
43.06666667
q_total_ug
570
qbr_conc_b
300
qbr_conc_m
430.6666667
qbr_conc_mean
422
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
1 hr 5 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_1w_SRE0
treatment
59
tube_number
6
tube_number