SAMN35061684
External Id
Salk
INSDC center name
2023-06-30T00:52:15.147Z
INSDC first public
2023-06-30T00:52:15.147Z
INSDC last update
SRS17636411
INSDC secondary accession
live
INSDC status
L001-701
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636411
SRA accession
0
SRE
26.04941947
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1100
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Mcal_091222_95etoh_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
2.9
femto_100k_1M
44.8
femto_10k_25k
43.7
femto_1_10k
100.3
femto_1_1M
9.1
femto_25k_50k
0
femto_50k_100k
2.9
femto_50k_1M
3.0504
femto_conc
2022-11-07a
femto_date
39574
femto_mean_bp
20
fish_FL_cm
22
fish_TL_cm
176.9
fish_mass_g
fish_8
fish_number
6
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Mcal091222
isolate
not applicable
isolation_source
32.84818 N 117.2784 W
lat_lon
32.84818
latitute
LJ childrens pool
location
-117.2784
longitude
3359
nanoplot_N50
3.4
nanoplot_N50_kb
2061.2
nanoplot_mean_RL
16.6
nanoplot_mean_RQ
376737882
nanoplot_total_bases
376.7
nanoplot_total_bases_Mb
182775
nanoplot_total_reads
2.31
nd_260230_b
2.33
nd_260230_m
2.32
nd_260230_mean
2.32
nd_260230_t
1.86
nd_260280_b
1.87
nd_260280_m
1.863333333
nd_260280_mean
1.86
nd_260280_t
304
nd_conc_b
262
nd_conc_m
263.6666667
nd_conc_mean
225
nd_conc_t
14.99103509
nd_cv
5-Oct-22
nd_date
-19
nd_days
1
nd_success
Medialuna californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314243
organism
not applicable
phenotype
10.19871006
q_cv
10/14/22
q_date
-10
q_days
34.26666667
q_total_ug
372
qbr_conc_b
352
qbr_conc_m
342.6666667
qbr_conc_mean
304
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
4 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_6w_SRE0
treatment
90
tube_number
20
tube_number