SAMN35061706
External Id
Salk
INSDC center name
2023-06-30T00:54:51.700Z
INSDC first public
2023-06-30T00:54:51.700Z
INSDC last update
SRS17636306
INSDC secondary accession
live
INSDC status
L001-763
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636306
SRA accession
1
SRE
-45.40659566
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1430
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Sjap_091222_95etoh_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
2.9
femto_100k_1M
52.3
femto_10k_25k
31.6
femto_1_10k
100.2
femto_1_1M
12.1
femto_25k_50k
1.6
femto_50k_100k
4.5
femto_50k_1M
4.1773
femto_conc
2022-11-07a
femto_date
21879
femto_mean_bp
23
fish_FL_cm
25
fish_TL_cm
139
fish_mass_g
fish_1
fish_number
9
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Sjap091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
10661
nanoplot_N50
10.7
nanoplot_N50_kb
4706.9
nanoplot_mean_RL
15.1
nanoplot_mean_RQ
41232593
nanoplot_total_bases
41.2
nanoplot_total_bases_Mb
8760
nanoplot_total_reads
2.27
nd_260230_b
2.36
nd_260230_m
2.333333333
nd_260230_mean
2.37
nd_260230_t
1.85
nd_260280_b
1.86
nd_260280_m
1.853333333
nd_260280_mean
1.85
nd_260280_t
205
nd_conc_b
196
nd_conc_m
198.3333333
nd_conc_mean
194
nd_conc_t
2.954352241
nd_cv
14-Oct-22
nd_date
-10
nd_days
1
nd_success
Scomber japonicus
http://purl.obolibrary.org/obo/NCBITaxon_13676
organism
not applicable
phenotype
4.382682133
q_cv
10/14/22
q_date
-10
q_days
25.13333333
q_total_ug
262
qbr_conc_b
240
qbr_conc_m
251.3333333
qbr_conc_mean
252
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
60 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_6w_SRE1
treatment
44
tube_number
93
tube_number