SAMN35061650
External Id
Salk
INSDC center name
2023-06-30T00:51:09.713Z
INSDC first public
2023-06-30T00:51:09.713Z
INSDC last update
SRS17636272
INSDC secondary accession
live
INSDC status
L001-765
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636272
SRA accession
1
SRE
-64.83792012
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
40
femto_100k_1M
10.8
femto_10k_25k
4.7
femto_1_10k
100.4
femto_1_1M
27.5
femto_25k_50k
17.9
femto_50k_100k
57.9
femto_50k_1M
2.478
femto_conc
2022-11-07a
femto_date
104734
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
11780
nanoplot_N50
11.8
nanoplot_N50_kb
4370.4
nanoplot_mean_RL
15.3
nanoplot_mean_RQ
3107368
nanoplot_total_bases
3.1
nanoplot_total_bases_Mb
711
nanoplot_total_reads
2.3
nd_260230_b
2.33
nd_260230_m
2.373333333
nd_260230_mean
2.49
nd_260230_t
1.85
nd_260280_b
1.87
nd_260280_m
1.87
nd_260280_mean
1.89
nd_260280_t
264
nd_conc_b
248
nd_conc_m
216
nd_conc_mean
136
nd_conc_t
32.28814032
nd_cv
31-Oct-22
nd_date
11
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
11.25194197
q_cv
10/31/22
q_date
11
q_days
12.6
q_total_ug
110
qbr_conc_b
137
qbr_conc_m
126
qbr_conc_mean
131
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE1
treatment
70
tube_number
74
tube_number