SAMN35061693
External Id
Salk
INSDC center name
2023-06-30T00:53:36.207Z
INSDC first public
2023-06-30T00:53:36.207Z
INSDC last update
SRS17636418
INSDC secondary accession
live
INSDC status
L001-693
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636418
SRA accession
0
SRE
26.19426752
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1100
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Mcal_091222_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
48
femto_100k_1M
11.4
femto_10k_25k
8.6
femto_1_10k
100.2
femto_1_1M
19.8
femto_25k_50k
12.9
femto_50k_100k
60.9
femto_50k_1M
4.2925
femto_conc
2022-11-07a
femto_date
191673
femto_mean_bp
20
fish_FL_cm
22
fish_TL_cm
176.9
fish_mass_g
fish_8
fish_number
6
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Mcal091222
isolate
not applicable
isolation_source
32.84818 N 117.2784 W
lat_lon
32.84818
latitute
LJ childrens pool
location
-117.2784
longitude
11304
nanoplot_N50
11.3
nanoplot_N50_kb
4263.7
nanoplot_mean_RL
16.8
nanoplot_mean_RQ
241660170
nanoplot_total_bases
241.7
nanoplot_total_bases_Mb
56678
nanoplot_total_reads
2.01
nd_260230_b
2.04
nd_260230_m
2.04
nd_260230_mean
2.07
nd_260230_t
1.84
nd_260280_b
1.84
nd_260280_m
1.843333333
nd_260280_mean
1.85
nd_260280_t
181
nd_conc_b
178
nd_conc_m
178.6666667
nd_conc_mean
177
nd_conc_t
1.165111567
nd_cv
14-Oct-22
nd_date
-6
nd_days
1
nd_success
Medialuna californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314243
organism
not applicable
phenotype
15.67851855
q_cv
10/14/22
q_date
-6
q_days
22.86666667
q_total_ug
270
qbr_conc_b
206
qbr_conc_m
228.6666667
qbr_conc_mean
210
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
4 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE0
treatment
72
tube_number
42
tube_number