SAMN35061741
External Id
Salk
INSDC center name
2023-06-30T00:51:10.160Z
INSDC first public
2023-06-30T00:51:10.160Z
INSDC last update
SRS17636344
INSDC secondary accession
live
INSDC status
L001-685
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636344
SRA accession
0
SRE
18.31721975
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_95etoh_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Sep-22
extraction_date
20.8
femto_100k_1M
17.9
femto_10k_25k
2.1
femto_1_10k
101.5
femto_1_1M
52.3
femto_25k_50k
8.8
femto_50k_100k
29.6
femto_50k_1M
0.6507
femto_conc
2022-11-08a
femto_date
88420
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
22962
nanoplot_N50
23
nanoplot_N50_kb
7226.3
nanoplot_mean_RL
16.6
nanoplot_mean_RQ
205465546
nanoplot_total_bases
205.5
nanoplot_total_bases_Mb
28433
nanoplot_total_reads
2.16
nd_260230_b
2.2
nd_260230_m
2.21
nd_260230_mean
2.27
nd_260230_t
1.82
nd_260280_b
1.84
nd_260280_m
1.84
nd_260280_mean
1.86
nd_260280_t
604
nd_conc_b
541
nd_conc_m
527
nd_conc_mean
436
nd_conc_t
16.10445722
nd_cv
31-Oct-22
nd_date
42
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
31.55039608
q_cv
10/31/22
q_date
42
q_days
33.2
q_total_ug
424
qbr_conc_b
354
qbr_conc_m
332
qbr_conc_mean
218
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_1w_SRE0
treatment
19
tube_number
86
tube_number