SAMN35061614
External Id
Salk
INSDC center name
2023-06-30T00:51:09.430Z
INSDC first public
2023-06-30T00:51:09.430Z
INSDC last update
SRS17636378
INSDC secondary accession
live
INSDC status
L001-672
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636378
SRA accession
0
SRE
19.86107841
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Ejac_090922_RNAlater_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
21-Oct-22
extraction_date
15.9
femto_100k_1M
17.3
femto_10k_25k
7
femto_1_10k
100.2
femto_1_1M
51.2
femto_25k_50k
9.1
femto_50k_100k
25
femto_50k_1M
5.308
femto_conc
2022-11-07a
femto_date
65235
femto_mean_bp
20.1
fish_FL_cm
20.3
fish_TL_cm
214.5
fish_mass_g
fish_5
fish_number
3
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Ejac090922
isolate
not applicable
isolation_source
32.76044 N 117.2454 W
lat_lon
32.76044
latitute
MB jetty North
location
-117.2454
longitude
8494
nanoplot_N50
8.5
nanoplot_N50_kb
4718.4
nanoplot_mean_RL
16.9
nanoplot_mean_RQ
163770728
nanoplot_total_bases
163.8
nanoplot_total_bases_Mb
34709
nanoplot_total_reads
2.39
nd_260230_b
2.41
nd_260230_m
2.403333333
nd_260230_mean
2.41
nd_260230_t
1.87
nd_260280_b
1.87
nd_260280_m
1.873333333
nd_260280_mean
1.88
nd_260280_t
247
nd_conc_b
215
nd_conc_m
216.6666667
nd_conc_mean
188
nd_conc_t
13.63167214
nd_cv
31-Oct-22
nd_date
10
nd_days
1
nd_success
Embiotoca jacksoni
http://purl.obolibrary.org/obo/NCBITaxon_100190
organism
not applicable
phenotype
10.63904018
q_cv
10/31/22
q_date
10
q_days
15.7
q_total_ug
172
qbr_conc_b
160
qbr_conc_m
157
qbr_conc_mean
139
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
3 hr 15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_6w_SRE0
treatment
77
tube_number
82
tube_number