SAMN35061725
External Id
Salk
INSDC center name
2023-06-30T00:53:36.367Z
INSDC first public
2023-06-30T00:53:36.367Z
INSDC last update
SRS17636325
INSDC secondary accession
live
INSDC status
L001-641
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636325
SRA accession
0
SRE
-38.53297162
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1445
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Spol_091222_95etoh_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
0.5
femto_100k_1M
30.6
femto_10k_25k
65.2
femto_1_10k
100.2
femto_1_1M
4.1
femto_25k_50k
0
femto_50k_100k
0.5
femto_50k_1M
4.1813
femto_conc
2022-11-07a
femto_date
12379
femto_mean_bp
17.2
fish_FL_cm
17.4
fish_TL_cm
38.8
fish_mass_g
fish_2
fish_number
10
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Spol091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
9584
nanoplot_N50
9.6
nanoplot_N50_kb
4938.4
nanoplot_mean_RL
17.3
nanoplot_mean_RQ
438237376
nanoplot_total_bases
438.2
nanoplot_total_bases_Mb
88740
nanoplot_total_reads
1.56
nd_260230_b
2.34
nd_260230_m
2.09
nd_260230_mean
2.37
nd_260230_t
1.76
nd_260280_b
1.87
nd_260280_m
1.833333333
nd_260280_mean
1.87
nd_260280_t
668
nd_conc_b
277
nd_conc_m
405.6666667
nd_conc_mean
272
nd_conc_t
56.00684117
nd_cv
14-Oct-22
nd_date
-10
nd_days
1
nd_success
Seriphus politus
http://purl.obolibrary.org/obo/NCBITaxon_515231
organism
not applicable
phenotype
23.59986441
q_cv
10/14/22
q_date
-10
q_days
41.66666667
q_total_ug
530
qbr_conc_b
366
qbr_conc_m
416.6666667
qbr_conc_mean
354
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_6w_SRE0
treatment
50
tube_number
94
tube_number