SAMN35061710
External Id
Salk
INSDC center name
2023-06-30T00:51:09.970Z
INSDC first public
2023-06-30T00:51:09.970Z
INSDC last update
SRS17636304
INSDC secondary accession
live
INSDC status
L001-759
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636304
SRA accession
1
SRE
-19.10333402
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1430
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Sjap_091222_95etoh_4C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
46.9
femto_100k_1M
5.9
femto_10k_25k
3.8
femto_1_10k
100.9
femto_1_1M
21.9
femto_25k_50k
23.1
femto_50k_100k
70
femto_50k_1M
1.0614
femto_conc
2022-11-07b
femto_date
95759
femto_mean_bp
23
fish_FL_cm
25
fish_TL_cm
139
fish_mass_g
fish_1
fish_number
9
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Sjap091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
7813
nanoplot_N50
7.8
nanoplot_N50_kb
2751
nanoplot_mean_RL
15.1
nanoplot_mean_RQ
3636806
nanoplot_total_bases
3.6
nanoplot_total_bases_Mb
1322
nanoplot_total_reads
2.27
nd_260230_b
2.26
nd_260230_m
2.27
nd_260230_mean
2.28
nd_260230_t
1.83
nd_260280_b
1.84
nd_260280_m
1.836666667
nd_260280_mean
1.84
nd_260280_t
603
nd_conc_b
534
nd_conc_m
538.3333333
nd_conc_mean
478
nd_conc_t
11.63081708
nd_cv
4-Oct-22
nd_date
1
nd_days
1
nd_success
Scomber japonicus
http://purl.obolibrary.org/obo/NCBITaxon_13676
organism
not applicable
phenotype
23.82711225
q_cv
10/14/22
q_date
11
q_days
66.46666667
q_total_ug
844
qbr_conc_b
544
qbr_conc_m
664.6666667
qbr_conc_mean
606
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
60 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_3w_SRE1
treatment
11
tube_number
59
tube_number