SAMN35061757
External Id
Salk
INSDC center name
2023-06-30T00:53:36.573Z
INSDC first public
2023-06-30T00:53:36.573Z
INSDC last update
SRS17636337
INSDC secondary accession
live
INSDC status
L001-689
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636337
SRA accession
0
SRE
57.13138267
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_RNAlater_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
44.8
femto_100k_1M
8.5
femto_10k_25k
4.7
femto_1_10k
100.3
femto_1_1M
26.4
femto_25k_50k
16.4
femto_50k_100k
61.2
femto_50k_1M
3.1571
femto_conc
2022-11-07a
femto_date
118601
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
8715
nanoplot_N50
8.7
nanoplot_N50_kb
3273.9
nanoplot_mean_RL
15.9
nanoplot_mean_RQ
39155880
nanoplot_total_bases
39.2
nanoplot_total_bases_Mb
11960
nanoplot_total_reads
2.57
nd_260230_b
1.46
nd_260230_m
2.103333333
nd_260230_mean
2.28
nd_260230_t
1.9
nd_260280_b
1.65
nd_260280_m
1.793333333
nd_260280_mean
1.83
nd_260280_t
781
nd_conc_b
880
nd_conc_m
767.6666667
nd_conc_mean
642
nd_conc_t
15.5743263
nd_cv
31-Oct-22
nd_date
28
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
38.63223719
q_cv
10/31/22
q_date
28
q_days
39.6
q_total_ug
538
qbr_conc_b
416
qbr_conc_m
396
qbr_conc_mean
234
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_3w_SRE0
treatment
67
tube_number
43
tube_number