SAMN35061760
External Id
Salk
INSDC center name
2023-06-30T00:53:36.687Z
INSDC first public
2023-06-30T00:53:36.687Z
INSDC last update
SRS17636369
INSDC secondary accession
live
INSDC status
L001-834
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636369
SRA accession
1
SRE
35.67977916
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_RNAlater_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
25.9
femto_100k_1M
13.7
femto_10k_25k
5.8
femto_1_10k
100.2
femto_1_1M
42.9
femto_25k_50k
12.2
femto_50k_100k
38.1
femto_50k_1M
5.0602
femto_conc
2022-11-07a
femto_date
91161
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
9830
nanoplot_N50
9.8
nanoplot_N50_kb
5387.4
nanoplot_mean_RL
15.2
nanoplot_mean_RQ
23100961
nanoplot_total_bases
23.1
nanoplot_total_bases_Mb
4288
nanoplot_total_reads
2.21
nd_260230_b
2.28
nd_260230_m
2.25
nd_260230_mean
2.26
nd_260230_t
1.83
nd_260280_b
1.83
nd_260280_m
1.83
nd_260280_mean
1.83
nd_260280_t
957
nd_conc_b
737
nd_conc_m
712.3333333
nd_conc_mean
443
nd_conc_t
36.20303414
nd_cv
14-Oct-22
nd_date
-10
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
79.58831374
q_cv
10/14/22
q_date
-10
q_days
113.9
q_total_ug
1780
qbr_conc_b
498
qbr_conc_m
1139
qbr_conc_mean
>
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_6w_SRE1
treatment
55
tube_number
83
tube_number