SAMN28593895
External Id
Makerere University
INSDC center name
2023-06-30T00:52:48.960Z
INSDC first public
2023-06-30T00:52:48.960Z
INSDC last update
SRS13137305
INSDC secondary accession
live
INSDC status
Pathogen.cl
NCBI submission model
Pathogen.cl.1.0
NCBI submission package
SRS13137305
SRA accession
Makerere University
collected_by
2020-01
collection_date
E. coli significantly causes nosocomial infections and rampant spread of antimicrobial resistance (AMR). There is limited data on genomic characterization of extended-spectrum beta-lactamase (ESBL)-producing E. coli from African clinical settings. This hospital-based longitudinal study unraveled the genetic virulence factors in ESBL E. coli isolates from Uganda and Tanzania using whole genome sequencing (WGS). A total of 73 ESBL multi-drug resistant E. coli isolates from both Tanzania and Uganda were analyzed and out of these 40 and 33 originated from Uganda and Tanzania respectively.
description
Tanzania
geo_loc_name
Homo sapiens
host
diarrhea
host_disease
Human
isolate
stool
isolation_source
2.5164 S 32.9175 E
lat_lon
Escherichia coli
http://purl.obolibrary.org/obo/NCBITaxon_562
organism
Unraveling virulence determinants in extended-spectrum beta-lactamase-producing Escherichia coli from Uganda and Tanzania using whole-genome sequencing
title