SAMN35061644
External Id
Salk
INSDC center name
2023-06-30T00:51:09.557Z
INSDC first public
2023-06-30T00:51:09.557Z
INSDC last update
SRS17636270
INSDC secondary accession
live
INSDC status
L001-766
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636270
SRA accession
1
SRE
-37.67605634
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_95etoh_4C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Sep-22
extraction_date
20.3
femto_100k_1M
29.9
femto_10k_25k
22.6
femto_1_10k
100.7
femto_1_1M
22.8
femto_25k_50k
5.5
femto_50k_100k
25.8
femto_50k_1M
1.2745
femto_conc
2022-11-08a
femto_date
68980
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
20355
nanoplot_N50
20.4
nanoplot_N50_kb
7933.7
nanoplot_mean_RL
15.7
nanoplot_mean_RQ
7616392
nanoplot_total_bases
7.6
nanoplot_total_bases_Mb
960
nanoplot_total_reads
2.01
nd_260230_b
2.04
nd_260230_m
2.103333333
nd_260230_mean
2.26
nd_260230_t
1.81
nd_260280_b
1.83
nd_260280_m
1.833333333
nd_260280_mean
1.86
nd_260280_t
600
nd_conc_b
514
nd_conc_m
496.6666667
nd_conc_mean
376
nd_conc_t
22.75197482
nd_cv
14-Oct-22
nd_date
25
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
28.85656234
q_cv
10/14/22
q_date
25
q_days
65.53333333
q_total_ug
848
qbr_conc_b
648
qbr_conc_m
655.3333333
qbr_conc_mean
470
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_1w_SRE1
treatment
28
tube_number
54
tube_number