SAMN35061673
External Id
Salk
INSDC center name
2023-06-30T00:54:51.480Z
INSDC first public
2023-06-30T00:54:51.480Z
INSDC last update
SRS17636405
INSDC secondary accession
live
INSDC status
L001-646
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636405
SRA accession
0
SRE
-26.80076324
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Kazu_090722_RNAlater_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
14-Sep-22
extraction_date
37.8
femto_100k_1M
10.4
femto_10k_25k
3.4
femto_1_10k
100.2
femto_1_1M
38
femto_25k_50k
11
femto_50k_100k
48.8
femto_50k_1M
4.002
femto_conc
2022-11-07a
femto_date
114558
femto_mean_bp
28
fish_FL_cm
32
fish_TL_cm
519.7
fish_mass_g
fish_3
fish_number
1
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Kazu090722
isolate
not applicable
isolation_source
32.75811 N 117.2449 W
lat_lon
32.75811
latitute
MB quivira jetty south
location
-117.2449
longitude
12578
nanoplot_N50
12.6
nanoplot_N50_kb
4478
nanoplot_mean_RL
16.1
nanoplot_mean_RQ
15552180
nanoplot_total_bases
15.6
nanoplot_total_bases_Mb
3473
nanoplot_total_reads
2.31
nd_260230_b
2.32
nd_260230_m
2.303333333
nd_260230_mean
2.28
nd_260230_t
1.84
nd_260280_b
1.84
nd_260280_m
1.836666667
nd_260280_mean
1.83
nd_260280_t
1335
nd_conc_b
1265
nd_conc_m
1214.333333
nd_conc_mean
1043
nd_conc_t
12.55430291
nd_cv
5-Oct-22
nd_date
21
nd_days
1
nd_success
Kyphosus azureus
http://purl.obolibrary.org/obo/NCBITaxon_2838349
organism
not applicable
phenotype
26.29704605
q_cv
10/14/22
q_date
30
q_days
156.6666667
q_total_ug
1180
qbr_conc_b
2000
qbr_conc_m
1566.666667
qbr_conc_mean
1520
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
2 hr 45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_1w_SRE0
treatment
1
tube_number
17
tube_number