SAMN35061754
External Id
Salk
INSDC center name
2023-06-30T00:52:15.750Z
INSDC first public
2023-06-30T00:52:15.750Z
INSDC last update
SRS17636367
INSDC secondary accession
live
INSDC status
L001-825
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636367
SRA accession
1
SRE
-2.221121879
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1515
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Tsym_091222_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
39
femto_100k_1M
16.1
femto_10k_25k
5.1
femto_1_10k
100.2
femto_1_1M
29
femto_25k_50k
11.4
femto_50k_100k
50.4
femto_50k_1M
6.1077
femto_conc
2022-11-07a
femto_date
178430
femto_mean_bp
11.5
fish_FL_cm
12.5
fish_TL_cm
14.1
fish_mass_g
fish_7
fish_number
5
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Tsym091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
13823
nanoplot_N50
13.8
nanoplot_N50_kb
3480.9
nanoplot_mean_RL
14.7
nanoplot_mean_RQ
2046791
nanoplot_total_bases
2
nanoplot_total_bases_Mb
588
nanoplot_total_reads
2.45
nd_260230_b
2.47
nd_260230_m
2.47
nd_260230_mean
2.49
nd_260230_t
1.85
nd_260280_b
1.86
nd_260280_m
1.856666667
nd_260280_mean
1.86
nd_260280_t
162
nd_conc_b
143
nd_conc_m
145.3333333
nd_conc_mean
131
nd_conc_t
10.75538907
nd_cv
14-Oct-22
nd_date
-6
nd_days
1
nd_success
Trachurus symmetricus
http://purl.obolibrary.org/obo/NCBITaxon_271940
organism
not applicable
phenotype
18.39974069
q_cv
10/14/22
q_date
-6
q_days
18.76666667
q_total_ug
226
qbr_conc_b
178
qbr_conc_m
187.6666667
qbr_conc_mean
159
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE1
treatment
71
tube_number
40
tube_number