NA
Additional.info.affecting.microbiome..M3...Biospecimen.
150001-200000
Annual.household.income..Biospecimen.
False
Anti.infective..Biospecimen.
NA
Autism.spectrum.disorder..Biospecimen.
NA
Average.conc..Extract.
batch1re
Batch..OmicsFileSet.
True
Behavior.video.submitted..M3...Biospecimen.
B18012038
Biospecimen.Barcode
2017-12-23T00:00:00
Biospecimen.Date.Collected
Matched with metadata entry NT_T3_Family_019
Biospecimen.Description
152288
Biospecimen.ID
M3_019_P2_N_V1
Biospecimen.Name
0.25
Biospecimen.consumption
gram
Biospecimen.consumption.unit
NA
Biospecimen.location..Extract.
NA
Biospecimen.mass
NA
Biospecimen.mass.unit
True
Born.by.caesarian.section..Biospecimen.
False
Born.prematurely..Biospecimen.
7-10 meals per week
Bread..consumption.frequency...longitudinal...Biospecimen.
NA
Childhood.behavioral.development.finding..Biospecimen.
NA
Conc1..Extract.
NA
Conc2..Extract.
False
Constipation..Biospecimen.
NA
Conversation.ability..Biospecimen.
Several times weekly
Dairy..consumption.frequency...Biospecimen.
7-10 meals per week
Dairy..consumption.frequency...longitudinal...Biospecimen.
False
Diarrhea..Biospecimen.
Mother's milk diet
Diet.during.infancy..Biospecimen.
7-10 meals per week
Dietary.fat.and.oil..consumption.frequency...longitudinal...Biospecimen.
Omnivorous/avoids red meat diet
Dietary.regime..Biospecimen.
False
Dietary.restrictions..M3...Biospecimen.
NA
Dietary.restrictions.details..M3...Biospecimen.
False
Dietary.supplement..Biospecimen.
False
Environmental.tobacco.smoke.exposure..Biospecimen.
NA
Explain.how.you.collected.stool.sample..M3...Biospecimen.
SAMN31514659
External Id
Z18008802
Extract.Barcode
NA
Extract.Date.Collected
153931
Extract.ID
NA
Extract.Name
0.03
Extract.concentration
ng/uL
Extract.concentration.unit
NA
Extract.consumption
NA
Extract.consumption.unit
100
Extract.volume
microliter
Extract.volume.unit
NA
Extraction.Protocol.description
Glass
Extraction.Protocol.disruption_bead_type
600
Extraction.Protocol.disruption_duration
1750
Extraction.Protocol.disruption_intensity
NA
Extraction.Protocol.disruption_temperature
2018-05-10T18:01:55.521Z
Extraction.Protocol.dtstamp
gDNA
Extraction.Protocol.extract_type
MagAttract PowerMicrobiome DNA/RNA KF
Extraction.Protocol.extraction_kit
RNAse-Free Water
Extraction.Protocol.final_buffer
316
Extraction.Protocol.id
MAD LAB High Throughput Extraction of DNA using the MagAttract PowerMicrobiome DNA/RNA KF Kit
Extraction.Protocol.name
NA
Extraction.Protocol.notes
100
Extraction.Protocol.nucleic_acid_eluted_volume
452
Extraction.Protocol.protocol_id
Magnetic Beads
Extraction.Protocol.purification_method
-20
Extraction.Protocol.storage_temperature
24
Extraction.Protocol.user_id
NA
Extraction.batch.ID..Extract.
NA
Extraction.kit.lot.number..Extract.
NA
Eye.contact.finding..Biospecimen.
19
Family.group.ID..Biospecimen.
Never
Fermented.vegetable..consumption.frequency...Biospecimen.
False
Fever..Biospecimen.
False
Flu.like.symptoms..Biospecimen.
Not in past year
Flu.shot.in.the.last..M3...Biospecimen.
NA
Flu.shot.in.the.last..MFlu.shot.in.the.last..M3...Biospecimen.
NA
Foreign.travel.within.past.months..Biospecimen.
Daily
Frequency.of.interaction.with.pet.s...Biospecimen.
Several times weekly
Fruit..consumption.frequency...Biospecimen.
7-10 meals per week
Fruit..consumption.frequency...longitudinal...Biospecimen.
Tends to have normal bowel function
Functional.bowel.finding..Biospecimen.
False
GI.issues.one.month.ago..M3...Biospecimen.
False
GI.issues.this.week..M3...Biospecimen.
False
GI.issues.three.months.ago..M3...Biospecimen.
False
GI.issues.two.months.ago..M3...Biospecimen.
False
GI.issues.two.weeks.ago..M3...Biospecimen.
False
GI.symptoms.within.3.months..M3...Biospecimen.
NA
Gastrointestinal.problems..M3...Biospecimen.
NA
Gestational.age..Biospecimen.
False
Gluten.allergy..Biospecimen.
9495
Host.ID
019_N
Host.Name
Control (disease status)
Host.disease.status..Biospecimen.
True
Host.interaction.with.pets..Biospecimen.
Oregon State University
INSDC center name
2023-07-01T00:00:00Z
INSDC first public
2023-07-01T13:42:25.311Z
INSDC last update
SRS15613463
INSDC secondary accession
live
INSDC status
NA
Imitation.behavior..Biospecimen.
True
Indoors.pet..Biospecimen.
NA
Indoors.pets..Biospecimen.
0 (non-ASD)
LR.L2.2.Video.classifier.score..M3...Biospecimen.
False
Lactose.intolerance..Biospecimen.
NA
Language.ability.and.use..Biospecimen.
NA
Length.of.recent.foreign.travel..Biospecimen.
L18005210
Library.Barcode
NA
Library.Date.Collected
154980
Library.ID
NA
Library.Name
0.04
Library.concentration
ng/uL
Library.concentration.unit
NA
Library.mass
NA
Library.mass.unit
50
Library.volume
microliter
Library.volume.unit
NA
Location.on.Extraction.Plate..Extract.
Several times weekly
Meals.prepared.at.home..consumption.frequency...Biospecimen.
Never
Meat..consumption.frequency...Biospecimen.
7-10 meals per week
Meats.and.seafood..consumption.frequency...longitudinal...Biospecimen.
3
Minimum.time.since.antibiotics..Biospecimen.
NA
Mobile.Autism.Risk.Assessment.Score..Biospecimen.
NA
Most.recent.GI.episode.symptoms..M3...Biospecimen.
True
Multivitamin..Biospecimen.
Human
NCBI submission model
Human.1.0
NCBI submission package
473
Natural.father.current.age..months...Biospecimen.
502
Natural.mother.current.age..months...Biospecimen.
019_A
Natural.sibling.included.in.present.study..Biospecimen.
False
Non.celiac.gluten.sensitivity..Biospecimen.
NA
Normalized.concentration..Extract.
0
Number.of.pet.birds..Biospecimen.
1
Number.of.pet.cats..Biospecimen.
0
Number.of.pet.dogs..Biospecimen.
0
Number.of.pet.fish..Biospecimen.
0
Number.of.pet.horses..Biospecimen.
0
Number.of.pet.reptiles..Biospecimen.
0
Number.of.roommates..Biospecimen.
Weekly
Olive.oil.used.in.cooking..M3...Biospecimen.
L18005210_M05416_23_000000000_BMJYW
OmicsFileSet.Barcode
157433
OmicsFileSet.ID
_O1
OmicsFileSet.Name
False
Other.GI.symptoms..M3...Biospecimen.
False
Other.symptoms.this.week..M3...Biospecimen.
True
Outdoors.pet..Biospecimen.
NA
Outdoors.pets..Biospecimen.
0
PCR.Protocol.BSA_final_conc
0
PCR.Protocol.KCl_final_conc
0
PCR.Protocol.MgCl2_final_conc
0
PCR.Protocol.MgSO4_final_conc
0
PCR.Protocol.Tris_HCl_final_conc
0
PCR.Protocol.Tris_SO4_final_conc
Q5 HotStart High Fidelity DNA Polymerase
PCR.Protocol.amp_polymerase
0
PCR.Protocol.amplicon_length
NA
PCR.Protocol.amplification_target
30
PCR.Protocol.cycle_annealing_duration
static
PCR.Protocol.cycle_annealing_method
50
PCR.Protocol.cycle_annealing_temp
20
PCR.Protocol.cycle_count
10
PCR.Protocol.cycle_denaturation_duration
98
PCR.Protocol.cycle_denaturation_temp
30
PCR.Protocol.cycle_extension_duration
72
PCR.Protocol.cycle_extension_temp
200
PCR.Protocol.dATP_final_conc
200
PCR.Protocol.dCTP_final_conc
200
PCR.Protocol.dGTP_final_conc
200
PCR.Protocol.dTTP_final_conc
0
PCR.Protocol.dUTP_final_conc
30
PCR.Protocol.denaturation_duration_initial
98
PCR.Protocol.denaturation_temp_initial
NA
PCR.Protocol.description
2017-11-06T22:06:22.526Z
PCR.Protocol.dtstamp
600
PCR.Protocol.extension_duration_final
72
PCR.Protocol.extension_temp
30
PCR.Protocol.extension_temp_duration
72
PCR.Protocol.extension_temp_final
0
PCR.Protocol.gelatin_final_conc
553
PCR.Protocol.id
16S_V4_Library_Preparation
PCR.Protocol.name
NA
PCR.Protocol.other_additives
0
PCR.Protocol.pcr_buffer_pH
Agencourt Ampure XP Beads
PCR.Protocol.pcr_clean_up_kits
bead
PCR.Protocol.pcr_clean_up_methods
NEB Q5 HotStart High-Fidelity 2x Master Mix
PCR.Protocol.pcr_kit
25
PCR.Protocol.pcr_volume
NA
PCR.Protocol.pcr_water
0
PCR.Protocol.pmid
0
PCR.Protocol.polymerase_units
NA
PCR.Protocol.primer_fwd_seq
NA
PCR.Protocol.primer_rev_seq
373
PCR.Protocol.protocol_id
Invitrogen Quant-it PicoGreen dsDNA Assay kit
PCR.Protocol.quantification_kit
V4
PCR.Protocol.region
2.5
PCR.Protocol.reverse_primer_final_conc
0
PCR.Protocol.tail_duration
NA
PCR.Protocol.tail_polymerase
0
PCR.Protocol.tail_temp
Veriti Thermocycler (Applied Biosystems)
PCR.Protocol.themocycler
0
PCR.Protocol.triton_X_100_final_conc
1
PCR.Protocol.user_id
False
Pet.bird..Biospecimen.
True
Pet.cat..Biospecimen.
False
Pet.dog..Biospecimen.
False
Pet.fish..Biospecimen.
False
Pet.horse..Biospecimen.
True
Pet.reptile..Biospecimen.
True
Pets.in.home..Biospecimen.
NA
Pica.disease..Biospecimen.
NA
Picks.up.objects.to.show.to.others..Biospecimen.
NA
PicoGreen.kit.lot.number..Extract.
NA
Plays.imaginatively.when.alone..Biospecimen.
NA
Plays.imaginatively.with.others..Biospecimen.
NA
Plays.in.a.group.with.others..Biospecimen.
MS0026
Pooled.library.batch.ID..Sequencing...OmicsFileSet.
Never
Probiotic..consumption.frequency...Biospecimen.
False
Problems.collecting.stool.sample..M3...Biospecimen.
NA
Quant.Plate.Location1..Extract.
NA
Quant.Plate.Location2..Extract.
NA
Quant.Plate.Number..Extract.
Caucasian
Racial.group..Biospecimen.
Weekly
Ready.to.eat.meals..consumption.frequency...Biospecimen.
No elevated anxiety
Recent.anxiety..caretaker.reported...Biospecimen.
False
Recently.ill..Biospecimen.
NA
Red.meat..consumption.frequency...Biospecimen.
NA
Repetitive.motion..Biospecimen.
NA
Response.to.typical.sounds..Biospecimen.
Weekly
Restaurant.prepared.meals..consumption.frequency...Biospecimen.
SRS15613463
SRA accession
Never
Seafood..consumption.frequency...Biospecimen.
NA
Self.injurious.behavior.finding..Biospecimen.
SG Soil Lab Sequencing Protocol
Sequencing.Protocol.description
2017-06-20T22:06:22.526Z
Sequencing.Protocol.dtstamp
2
Sequencing.Protocol.id
Illumina MiSeq
Sequencing.Protocol.instrument_model
7
Sequencing.Protocol.loading_lib_concentration
pmol/L
Sequencing.Protocol.loading_lib_concentration_unit
5134
Sequencing.Protocol.loading_lib_concentration_unit_ontology_id
MiSeq_V4_v1.0
Sequencing.Protocol.name
Bioanalyzer is used to asses quality of pooled library. PhiX control spike-in is 20-15% of final load.
Sequencing.Protocol.notes
359
Sequencing.Protocol.protocol_id
251
Sequencing.Protocol.read_length
MiSeq Reagent Kit v3 (600 cycle)
Sequencing.Protocol.sequencing_kit
4
Sequencing.Protocol.starting_lib_concentration
nmol/L
Sequencing.Protocol.starting_lib_concentration_unit
3135
Sequencing.Protocol.starting_lib_concentration_unit_ontology_id
10
Sequencing.Protocol.user_id
M05416_23_000000000_BMJYW
Sequencing.run.ID..OmicsFileSet.
False
Shares.bed.with.pet..Biospecimen.
NA
Sleep.pattern.finding..Biospecimen.
False
Small.pet.rodent..Biospecimen.
Drinking water is filtered
Source.of.drinking.water..Biospecimen.
None
Specific.food.allergy..Biospecimen.
NA
Standard.Curve..Extract.
7-10 meals per week
Starchy.food..consumption.frequency...longitudinal...Biospecimen.
2
Stool.frequency..Biospecimen.
NA
Stool.sample.challenges.explained..M3...Biospecimen.
NA
Stool.sample.collection.method..M3...Biospecimen.
Several times weekly
Sugary.food..consumption.frequency...Biospecimen.
Rarely
Sweetened.drink..consumption.frequency...Biospecimen.
Yes, I used the toilet cover when collecting samples from both of my children
Toilet.cover..M3...Biospecimen.
True
Toilet.trained..Biospecimen.
NA
Total.Volume.of.Sample..Extract.
NA
Travel.outside.US..notes...Biospecimen.
NA
Travel.to.country..Biospecimen.
NA
Understands.speech..Biospecimen.
Several times weekly
Vegetable..consumption.frequency...Biospecimen.
7-10 meals per week
Vegetable..consumption.frequency...longitudinal...Biospecimen.
Never
Vitamin.B.complex.supplement..consumption.frequency...Biospecimen.
Never
Vitamin.D..consumption.frequency...Biospecimen.
NA
Volume.DNA.to.add..Extract.
NA
Volume.H2O.to.add..Extract.
Several times weekly
Whole.grain..consumption.frequency...Biospecimen.
Timepoint 3
Within.study.sampling.date..Biospecimen.
42
age
months
age_units
not applicable
biomaterial_provider
not applicable
isolate
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
N
phenotype
female
sex
stool
tissue
Human sample from Homo sapiens
title