SAMN35061638
External Id
Salk
INSDC center name
2023-06-30T00:54:51.210Z
INSDC first public
2023-06-30T00:54:51.210Z
INSDC last update
SRS17636268
INSDC secondary accession
live
INSDC status
L001-767
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636268
SRA accession
1
SRE
-59.60431531
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_95etoh_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Sep-22
extraction_date
45
femto_100k_1M
9.2
femto_10k_25k
4.9
femto_1_10k
100.3
femto_1_1M
25.2
femto_25k_50k
16.6
femto_50k_100k
61.6
femto_50k_1M
3.2466
femto_conc
2022-11-07a
femto_date
131403
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
11720
nanoplot_N50
11.7
nanoplot_N50_kb
2471.3
nanoplot_mean_RL
14.8
nanoplot_mean_RQ
6894818
nanoplot_total_bases
6.9
nanoplot_total_bases_Mb
2790
nanoplot_total_reads
2.48
nd_260230_b
2.51
nd_260230_m
2.426666667
nd_260230_mean
2.29
nd_260230_t
1.87
nd_260280_b
1.87
nd_260280_m
1.853333333
nd_260280_mean
1.82
nd_260280_t
914
nd_conc_b
656
nd_conc_m
765
nd_conc_mean
725
nd_conc_t
17.46015768
nd_cv
31-Oct-22
nd_date
42
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
31.15751585
q_cv
10/31/22
q_date
42
q_days
49.8
q_total_ug
448
qbr_conc_b
672
qbr_conc_m
498
qbr_conc_mean
374
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_1w_SRE1
treatment
22
tube_number
98
tube_number