SAMN35061598
External Id
Salk
INSDC center name
2023-06-30T00:53:35.740Z
INSDC first public
2023-06-30T00:53:35.740Z
INSDC last update
SRS17636260
INSDC secondary accession
live
INSDC status
L001-668
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636260
SRA accession
0
SRE
-12.13418363
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Ejac_090922_95etoh_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
30-Sep-22
extraction_date
1.6
femto_100k_1M
19.7
femto_10k_25k
8.9
femto_1_10k
100.1
femto_1_1M
60.7
femto_25k_50k
9.6
femto_50k_100k
11.2
femto_50k_1M
5.8547
femto_conc
2022-11-07a
femto_date
35645
femto_mean_bp
20.1
fish_FL_cm
20.3
fish_TL_cm
214.5
fish_mass_g
fish_5
fish_number
3
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Ejac090922
isolate
not applicable
isolation_source
32.76044 N 117.2454 W
lat_lon
32.76044
latitute
MB jetty North
location
-117.2454
longitude
22894
nanoplot_N50
22.9
nanoplot_N50_kb
9403.3
nanoplot_mean_RL
17.5
nanoplot_mean_RQ
63227622
nanoplot_total_bases
63.2
nanoplot_total_bases_Mb
6724
nanoplot_total_reads
2.37
nd_260230_b
2.35
nd_260230_m
2.346666667
nd_260230_mean
2.32
nd_260230_t
1.86
nd_260280_b
1.86
nd_260280_m
1.856666667
nd_260280_mean
1.85
nd_260280_t
985
nd_conc_b
952
nd_conc_m
885
nd_conc_mean
718
nd_conc_t
16.44795692
nd_cv
14-Oct-22
nd_date
14
nd_days
1
nd_success
Embiotoca jacksoni
http://purl.obolibrary.org/obo/NCBITaxon_100190
organism
not applicable
phenotype
23.44737636
q_cv
10/14/22
q_date
14
q_days
110.4
q_total_ug
992
qbr_conc_b
1400
qbr_conc_m
1104
qbr_conc_mean
920
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
3 hr 15 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_3w_SRE0
treatment
35
tube_number
39
tube_number