SAMN36071603
External Id
University of Miami
INSDC center name
2023-06-29T00:00:00Z
INSDC first public
2023-06-29T13:26:27.710Z
INSDC last update
SRS18103429
INSDC secondary accession
live
INSDC status
SARS-CoV-2: wastewater surveillance
NCBI submission model
SARS-CoV-2.wwsurv.1.0
NCBI submission package
SRS18103429
SRA accession
University of Miami
collected_by
2020-11-18
collection_date
Babler-13461-021-ARTIC_S53_L001_R1_001.fastq.gz
filename
Babler-13461-021-ARTIC_S53_L001_R2_001.fastq.gz
filename2
Babler-13461-021-ARTIC_S53_L002_R1_001.fastq.gz
filename3
Babler-13461-021-ARTIC_S53_L002_R2_001.fastq.gz
filename4
USA: Florida
geo_loc_name
wastewater
isolation_source
wastewater metagenome
http://purl.obolibrary.org/obo/NCBITaxon_527639
organism
public health surveillance community-level
purpose_of_ww_sampling
detection of target by RT PCR or ddPCR
purpose_of_ww_sequencing
WG02g-201118
sample_id
University of Miami
sequenced_by[1]
Bio-Rad/admin
sequenced_by[2]
SARS-CoV-2: wastewater surveillance sample from wastewater metagenome
title
SARS
ww_endog_control_1
6115.078125
ww_endog_control_1_conc
V2G-qPCR
ww_endog_control_1_protocol
copies/L
ww_endog_control_1_units
copies/L
ww_endog_control_2_units
0
ww_flow
6.97
ww_ph
1409
ww_population
24
ww_sample_duration
raw wastewater
ww_sample_matrix
0.46
ww_sample_salinity
college or university
ww_sample_site
grab
ww_sample_type
FL
ww_surv_jurisdiction
SARS-CoV-2
ww_surv_target_1
5113.125
ww_surv_target_1_conc
copies/L
ww_surv_target_1_conc_unit
18.18
ww_surv_target_1_extract
count
ww_surv_target_1_extract_unit
NC
ww_surv_target_1_gene
yes
ww_surv_target_1_known_present
V2G-qPCR
ww_surv_target_1_protocol
copies/L
ww_surv_target_2_conc_unit
count
ww_surv_target_2_extract_unit
26.4
ww_temperature