SAMN35061635
External Id
Salk
INSDC center name
2023-06-30T00:53:36.003Z
INSDC first public
2023-06-30T00:53:36.003Z
INSDC last update
SRS17636390
INSDC secondary accession
live
INSDC status
L001-662
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636390
SRA accession
0
SRE
27.67554479
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1330
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Gnig_090722_RNAlater_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
19-Oct-22
extraction_date
36.7
femto_100k_1M
7.9
femto_10k_25k
4.6
femto_1_10k
100.1
femto_1_1M
39.1
femto_25k_50k
12.1
femto_50k_100k
48.8
femto_50k_1M
6.5346
femto_conc
2022-11-07a
femto_date
122532
femto_mean_bp
17.8
fish_FL_cm
18.5
fish_TL_cm
128.3
fish_mass_g
fish_4
fish_number
2
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Gnig090722
isolate
not applicable
isolation_source
32.75879 N 117.2433 W
lat_lon
32.75879
latitute
MB quivira jetty south
location
-117.2433
longitude
4130
nanoplot_N50
4.1
nanoplot_N50_kb
1918.5
nanoplot_mean_RL
16.1
nanoplot_mean_RQ
960819204
nanoplot_total_bases
960.8
nanoplot_total_bases_Mb
500808
nanoplot_total_reads
2.33
nd_260230_b
2.36
nd_260230_m
2.346666667
nd_260230_mean
2.35
nd_260230_t
1.84
nd_260280_b
1.84
nd_260280_m
1.84
nd_260280_mean
1.84
nd_260280_t
607
nd_conc_b
569
nd_conc_m
574
nd_conc_mean
546
nd_conc_t
5.366871708
nd_cv
14-Oct-22
nd_date
-5
nd_days
1
nd_success
Girella nigricans
http://purl.obolibrary.org/obo/NCBITaxon_214657
organism
not applicable
phenotype
31.31143405
q_cv
10/14/22
q_date
-5
q_days
44.33333333
q_total_ug
590
qbr_conc_b
314
qbr_conc_m
443.3333333
qbr_conc_mean
426
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
1 hr 5 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_6w_SRE0
treatment
62
tube_number
41
tube_number