SAMN35061704
External Id
Salk
INSDC center name
2023-06-30T00:54:51.643Z
INSDC first public
2023-06-30T00:54:51.643Z
INSDC last update
SRS17636302
INSDC secondary accession
live
INSDC status
L001-760
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636302
SRA accession
1
SRE
3.899915436
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1430
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Sjap_091222_95etoh_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
7
femto_100k_1M
42.4
femto_10k_25k
17.4
femto_1_10k
100.4
femto_1_1M
30.1
femto_25k_50k
3.8
femto_50k_100k
10.8
femto_50k_1M
2.4555
femto_conc
2022-11-08a
femto_date
39586
femto_mean_bp
23
fish_FL_cm
25
fish_TL_cm
139
fish_mass_g
fish_1
fish_number
9
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Sjap091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
20887
nanoplot_N50
20.9
nanoplot_N50_kb
7841.6
nanoplot_mean_RL
15.6
nanoplot_mean_RQ
15228309
nanoplot_total_bases
15.2
nanoplot_total_bases_Mb
1942
nanoplot_total_reads
2.52
nd_260230_b
2.49
nd_260230_m
2.43
nd_260230_mean
2.28
nd_260230_t
1.88
nd_260280_b
1.89
nd_260280_m
1.873333333
nd_260280_mean
1.85
nd_260280_t
1017
nd_conc_b
858
nd_conc_m
813
nd_conc_mean
564
nd_conc_t
28.26915089
nd_cv
31-Oct-22
nd_date
28
nd_days
1
nd_success
Scomber japonicus
http://purl.obolibrary.org/obo/NCBITaxon_13676
organism
not applicable
phenotype
13.61414544
q_cv
10/31/22
q_date
28
q_days
69.06666667
q_total_ug
688
qbr_conc_b
786
qbr_conc_m
690.6666667
qbr_conc_mean
598
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
60 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_3w_SRE1
treatment
53
tube_number
64
tube_number