NA
Additional.info.affecting.microbiome..M3...Biospecimen.
40001-80000
Annual.household.income..Biospecimen.
False
Anti.infective..Biospecimen.
NA
Autism.spectrum.disorder..Biospecimen.
0.316
Average.conc..Extract.
batch4
Batch..OmicsFileSet.
False
Behavior.video.submitted..M3...Biospecimen.
B18012523
Biospecimen.Barcode
2018-02-17T00:00:00
Biospecimen.Date.Collected
Matched with metadata entry ASD_T1_Family_154
Biospecimen.Description
153074
Biospecimen.ID
M3_154_P1_A_V1
Biospecimen.Name
0.27
Biospecimen.consumption
gram
Biospecimen.consumption.unit
SBIR Box 21 D3, D4
Biospecimen.location..Extract.
NA
Biospecimen.mass
NA
Biospecimen.mass.unit
True
Born.by.caesarian.section..Biospecimen.
False
Born.prematurely..Biospecimen.
7-10 meals per week
Bread..consumption.frequency...longitudinal...Biospecimen.
Uncertain about behavioral development
Childhood.behavioral.development.finding..Biospecimen.
0.328
Conc1..Extract.
0.304
Conc2..Extract.
False
Constipation..Biospecimen.
Limited conversation ability
Conversation.ability..Biospecimen.
Weekly
Dairy..consumption.frequency...Biospecimen.
7-10 meals per week
Dairy..consumption.frequency...longitudinal...Biospecimen.
False
Diarrhea..Biospecimen.
Mother's milk diet
Diet.during.infancy..Biospecimen.
7-10 meals per week
Dietary.fat.and.oil..consumption.frequency...longitudinal...Biospecimen.
Omnivorous/avoids red meat diet
Dietary.regime..Biospecimen.
False
Dietary.restrictions..M3...Biospecimen.
NA
Dietary.restrictions.details..M3...Biospecimen.
True
Dietary.supplement..Biospecimen.
False
Environmental.tobacco.smoke.exposure..Biospecimen.
Followed directions, scooped from hat
Explain.how.you.collected.stool.sample..M3...Biospecimen.
SAMN31514529
External Id
Z18010412
Extract.Barcode
2018-04-19T00:00:00
Extract.Date.Collected
155774
Extract.ID
NA
Extract.Name
63.2
Extract.concentration
ng/microliter
Extract.concentration.unit
NA
Extract.consumption
NA
Extract.consumption.unit
100
Extract.volume
uL
Extract.volume.unit
NA
Extraction.Protocol.description
Glass
Extraction.Protocol.disruption_bead_type
600
Extraction.Protocol.disruption_duration
1750
Extraction.Protocol.disruption_intensity
NA
Extraction.Protocol.disruption_temperature
2018-05-10T18:01:55.521Z
Extraction.Protocol.dtstamp
gDNA
Extraction.Protocol.extract_type
MagAttract PowerMicrobiome DNA/RNA KF
Extraction.Protocol.extraction_kit
RNAse-Free Water
Extraction.Protocol.final_buffer
316
Extraction.Protocol.id
MAD LAB High Throughput Extraction of DNA using the MagAttract PowerMicrobiome DNA/RNA KF Kit
Extraction.Protocol.name
NA
Extraction.Protocol.notes
100
Extraction.Protocol.nucleic_acid_eluted_volume
452
Extraction.Protocol.protocol_id
Magnetic Beads
Extraction.Protocol.purification_method
-20
Extraction.Protocol.storage_temperature
24
Extraction.Protocol.user_id
KF030_C
Extraction.batch.ID..Extract.
NA
Extraction.kit.lot.number..Extract.
Some eye contact
Eye.contact.finding..Biospecimen.
154
Family.group.ID..Biospecimen.
Never
Fermented.vegetable..consumption.frequency...Biospecimen.
False
Fever..Biospecimen.
False
Flu.like.symptoms..Biospecimen.
Not in past year
Flu.shot.in.the.last..M3...Biospecimen.
NA
Flu.shot.in.the.last..MFlu.shot.in.the.last..M3...Biospecimen.
NA
Foreign.travel.within.past.months..Biospecimen.
NA
Frequency.of.interaction.with.pet.s...Biospecimen.
Several times weekly
Fruit..consumption.frequency...Biospecimen.
7-10 meals per week
Fruit..consumption.frequency...longitudinal...Biospecimen.
Tends to have normal bowel function
Functional.bowel.finding..Biospecimen.
False
GI.issues.one.month.ago..M3...Biospecimen.
True
GI.issues.this.week..M3...Biospecimen.
False
GI.issues.three.months.ago..M3...Biospecimen.
False
GI.issues.two.months.ago..M3...Biospecimen.
False
GI.issues.two.weeks.ago..M3...Biospecimen.
True
GI.symptoms.within.3.months..M3...Biospecimen.
Sometimes
Gastrointestinal.problems..M3...Biospecimen.
NA
Gestational.age..Biospecimen.
False
Gluten.allergy..Biospecimen.
12274
Host.ID
154_A
Host.Name
Case (disease status)
Host.disease.status..Biospecimen.
NA
Host.interaction.with.pets..Biospecimen.
Oregon State University
INSDC center name
2023-07-01T00:00:00Z
INSDC first public
2023-07-01T13:42:10.195Z
INSDC last update
SRS15613533
INSDC secondary accession
live
INSDC status
Imitates others when prompted
Imitation.behavior..Biospecimen.
False
Indoors.pet..Biospecimen.
NA
Indoors.pets..Biospecimen.
NA
LR.L2.2.Video.classifier.score..M3...Biospecimen.
False
Lactose.intolerance..Biospecimen.
Phrase speech
Language.ability.and.use..Biospecimen.
NA
Length.of.recent.foreign.travel..Biospecimen.
L18006676
Library.Barcode
NA
Library.Date.Collected
155849
Library.ID
NA
Library.Name
20.29
Library.concentration
ng/uL
Library.concentration.unit
NA
Library.mass
NA
Library.mass.unit
50
Library.volume
microliter
Library.volume.unit
C04
Location.on.Extraction.Plate..Extract.
Several times weekly
Meals.prepared.at.home..consumption.frequency...Biospecimen.
Weekly
Meat..consumption.frequency...Biospecimen.
7-10 meals per week
Meats.and.seafood..consumption.frequency...longitudinal...Biospecimen.
3
Minimum.time.since.antibiotics..Biospecimen.
-3.531
Mobile.Autism.Risk.Assessment.Score..Biospecimen.
Diarrhea
Most.recent.GI.episode.symptoms..M3...Biospecimen.
True
Multivitamin..Biospecimen.
Human
NCBI submission model
Human.1.0
NCBI submission package
525
Natural.father.current.age..months...Biospecimen.
492
Natural.mother.current.age..months...Biospecimen.
154_N
Natural.sibling.included.in.present.study..Biospecimen.
False
Non.celiac.gluten.sensitivity..Biospecimen.
NA
Normalized.concentration..Extract.
0
Number.of.pet.birds..Biospecimen.
0
Number.of.pet.cats..Biospecimen.
0
Number.of.pet.dogs..Biospecimen.
0
Number.of.pet.fish..Biospecimen.
0
Number.of.pet.horses..Biospecimen.
0
Number.of.pet.reptiles..Biospecimen.
0
Number.of.roommates..Biospecimen.
Several times weekly
Olive.oil.used.in.cooking..M3...Biospecimen.
L18006676_M02273_17_000000000_BPPBG
OmicsFileSet.Barcode
157011
OmicsFileSet.ID
_O1
OmicsFileSet.Name
False
Other.GI.symptoms..M3...Biospecimen.
False
Other.symptoms.this.week..M3...Biospecimen.
False
Outdoors.pet..Biospecimen.
NA
Outdoors.pets..Biospecimen.
0
PCR.Protocol.BSA_final_conc
0
PCR.Protocol.KCl_final_conc
0
PCR.Protocol.MgCl2_final_conc
0
PCR.Protocol.MgSO4_final_conc
0
PCR.Protocol.Tris_HCl_final_conc
0
PCR.Protocol.Tris_SO4_final_conc
Q5 HotStart High Fidelity DNA Polymerase
PCR.Protocol.amp_polymerase
0
PCR.Protocol.amplicon_length
NA
PCR.Protocol.amplification_target
30
PCR.Protocol.cycle_annealing_duration
static
PCR.Protocol.cycle_annealing_method
50
PCR.Protocol.cycle_annealing_temp
20
PCR.Protocol.cycle_count
10
PCR.Protocol.cycle_denaturation_duration
98
PCR.Protocol.cycle_denaturation_temp
30
PCR.Protocol.cycle_extension_duration
72
PCR.Protocol.cycle_extension_temp
200
PCR.Protocol.dATP_final_conc
200
PCR.Protocol.dCTP_final_conc
200
PCR.Protocol.dGTP_final_conc
200
PCR.Protocol.dTTP_final_conc
0
PCR.Protocol.dUTP_final_conc
30
PCR.Protocol.denaturation_duration_initial
98
PCR.Protocol.denaturation_temp_initial
NA
PCR.Protocol.description
2017-11-06T22:06:22.526Z
PCR.Protocol.dtstamp
600
PCR.Protocol.extension_duration_final
72
PCR.Protocol.extension_temp
30
PCR.Protocol.extension_temp_duration
72
PCR.Protocol.extension_temp_final
0
PCR.Protocol.gelatin_final_conc
553
PCR.Protocol.id
16S_V4_Library_Preparation
PCR.Protocol.name
NA
PCR.Protocol.other_additives
0
PCR.Protocol.pcr_buffer_pH
Agencourt Ampure XP Beads
PCR.Protocol.pcr_clean_up_kits
bead
PCR.Protocol.pcr_clean_up_methods
NEB Q5 HotStart High-Fidelity 2x Master Mix
PCR.Protocol.pcr_kit
25
PCR.Protocol.pcr_volume
NA
PCR.Protocol.pcr_water
0
PCR.Protocol.pmid
0
PCR.Protocol.polymerase_units
NA
PCR.Protocol.primer_fwd_seq
NA
PCR.Protocol.primer_rev_seq
373
PCR.Protocol.protocol_id
Invitrogen Quant-it PicoGreen dsDNA Assay kit
PCR.Protocol.quantification_kit
V4
PCR.Protocol.region
2.5
PCR.Protocol.reverse_primer_final_conc
0
PCR.Protocol.tail_duration
NA
PCR.Protocol.tail_polymerase
0
PCR.Protocol.tail_temp
Veriti Thermocycler (Applied Biosystems)
PCR.Protocol.themocycler
0
PCR.Protocol.triton_X_100_final_conc
1
PCR.Protocol.user_id
False
Pet.bird..Biospecimen.
False
Pet.cat..Biospecimen.
False
Pet.dog..Biospecimen.
False
Pet.fish..Biospecimen.
False
Pet.horse..Biospecimen.
False
Pet.reptile..Biospecimen.
False
Pets.in.home..Biospecimen.
NA
Pica.disease..Biospecimen.
Regularly
Picks.up.objects.to.show.to.others..Biospecimen.
NA
PicoGreen.kit.lot.number..Extract.
Sometimes
Plays.imaginatively.when.alone..Biospecimen.
Rarely
Plays.imaginatively.with.others..Biospecimen.
Never
Plays.in.a.group.with.others..Biospecimen.
MS0036
Pooled.library.batch.ID..Sequencing...OmicsFileSet.
Several times weekly
Probiotic..consumption.frequency...Biospecimen.
False
Problems.collecting.stool.sample..M3...Biospecimen.
C09
Quant.Plate.Location1..Extract.
C10
Quant.Plate.Location2..Extract.
04192018_KF030C_A
Quant.Plate.Number..Extract.
Caucasian
Racial.group..Biospecimen.
Rarely
Ready.to.eat.meals..consumption.frequency...Biospecimen.
No elevated anxiety
Recent.anxiety..caretaker.reported...Biospecimen.
True
Recently.ill..Biospecimen.
NA
Red.meat..consumption.frequency...Biospecimen.
Sometimes
Repetitive.motion..Biospecimen.
Sensitive to typical sounds
Response.to.typical.sounds..Biospecimen.
Weekly
Restaurant.prepared.meals..consumption.frequency...Biospecimen.
SRS15613533
SRA accession
Never
Seafood..consumption.frequency...Biospecimen.
No self-injurious behavior
Self.injurious.behavior.finding..Biospecimen.
SG Soil Lab Sequencing Protocol
Sequencing.Protocol.description
2017-06-20T22:06:22.526Z
Sequencing.Protocol.dtstamp
2
Sequencing.Protocol.id
Illumina MiSeq
Sequencing.Protocol.instrument_model
7
Sequencing.Protocol.loading_lib_concentration
pmol/L
Sequencing.Protocol.loading_lib_concentration_unit
5134
Sequencing.Protocol.loading_lib_concentration_unit_ontology_id
MiSeq_V4_v1.0
Sequencing.Protocol.name
Bioanalyzer is used to asses quality of pooled library. PhiX control spike-in is 20-15% of final load.
Sequencing.Protocol.notes
359
Sequencing.Protocol.protocol_id
251
Sequencing.Protocol.read_length
MiSeq Reagent Kit v3 (600 cycle)
Sequencing.Protocol.sequencing_kit
4
Sequencing.Protocol.starting_lib_concentration
nmol/L
Sequencing.Protocol.starting_lib_concentration_unit
3135
Sequencing.Protocol.starting_lib_concentration_unit_ontology_id
10
Sequencing.Protocol.user_id
M02273_17_000000000_BPPBG
Sequencing.run.ID..OmicsFileSet.
False
Shares.bed.with.pet..Biospecimen.
Some sleep difficulties
Sleep.pattern.finding..Biospecimen.
False
Small.pet.rodent..Biospecimen.
Drinking water is bottled
Source.of.drinking.water..Biospecimen.
None
Specific.food.allergy..Biospecimen.
HR
Standard.Curve..Extract.
3-4 meals per week
Starchy.food..consumption.frequency...longitudinal...Biospecimen.
1
Stool.frequency..Biospecimen.
NA
Stool.sample.challenges.explained..M3...Biospecimen.
NA
Stool.sample.collection.method..M3...Biospecimen.
Weekly
Sugary.food..consumption.frequency...Biospecimen.
Never
Sweetened.drink..consumption.frequency...Biospecimen.
Yes, I used the toilet cover, but only for my child with autism
Toilet.cover..M3...Biospecimen.
True
Toilet.trained..Biospecimen.
NA
Total.Volume.of.Sample..Extract.
NA
Travel.outside.US..notes...Biospecimen.
NA
Travel.to.country..Biospecimen.
Understands most words
Understands.speech..Biospecimen.
Never
Vegetable..consumption.frequency...Biospecimen.
Never or less than once per week
Vegetable..consumption.frequency...longitudinal...Biospecimen.
Never
Vitamin.B.complex.supplement..consumption.frequency...Biospecimen.
Never
Vitamin.D..consumption.frequency...Biospecimen.
NA
Volume.DNA.to.add..Extract.
NA
Volume.H2O.to.add..Extract.
Several times weekly
Whole.grain..consumption.frequency...Biospecimen.
Timepoint 1
Within.study.sampling.date..Biospecimen.
55
age
months
age_units
not applicable
biomaterial_provider
not applicable
isolate
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
A
phenotype
male
sex
stool
tissue
Human sample from Homo sapiens
title