SAMN35061714
External Id
Salk
INSDC center name
2023-06-30T00:51:10.097Z
INSDC first public
2023-06-30T00:51:10.097Z
INSDC last update
SRS17636305
INSDC secondary accession
live
INSDC status
L001-755
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636305
SRA accession
1
SRE
232.9386102
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1430
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Sjap_091222_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
16
femto_100k_1M
33.1
femto_10k_25k
14
femto_1_10k
106.6
femto_1_1M
39.8
femto_25k_50k
3.9
femto_50k_100k
19.9
femto_50k_1M
0.1577
femto_conc
2022-11-07a
femto_date
82771
femto_mean_bp
23
fish_FL_cm
25
fish_TL_cm
139
fish_mass_g
fish_1
fish_number
9
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Sjap091222
isolate
not applicable
isolation_source
32.86713 N 117.2573 W
lat_lon
32.86713
latitute
SIO pier tank
location
-117.2573
longitude
32052
nanoplot_N50
32.1
nanoplot_N50_kb
14961.6
nanoplot_mean_RL
16.9
nanoplot_mean_RQ
119707500
nanoplot_total_bases
119.7
nanoplot_total_bases_Mb
8001
nanoplot_total_reads
3.71
nd_260230_b
4.48
nd_260230_m
3.703333333
nd_260230_mean
2.92
nd_260230_t
1.93
nd_260280_b
2.02
nd_260280_m
1.976666667
nd_260280_mean
1.98
nd_260280_t
14.6
nd_conc_b
13.7
nd_conc_m
14.16666667
nd_conc_mean
14.2
nd_conc_t
3.182999826
nd_cv
31-Oct-22
nd_date
11
nd_days
1
nd_success
Scomber japonicus
http://purl.obolibrary.org/obo/NCBITaxon_13676
organism
not applicable
phenotype
6.306306306
q_cv
10/31/22
q_date
11
q_days
0.888
q_total_ug
8.24
qbr_conc_b
9.28
qbr_conc_m
8.88
qbr_conc_mean
9.12
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-61
specimen_voucher
SIO: 23-61
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
0.5
time_before_EDTA_min
60 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE1
treatment
78
tube_number
75
tube_number