SAMN35061587
External Id
Salk
INSDC center name
2023-06-30T00:51:09.370Z
INSDC first public
2023-06-30T00:51:09.370Z
INSDC last update
SRS17636419
INSDC secondary accession
live
INSDC status
L001-822
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636419
SRA accession
1
SRE
20.28436019
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1400
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Cpun_090922_95etoh_4C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
21-Oct-22
extraction_date
27.6
femto_100k_1M
23
femto_10k_25k
8.8
femto_1_10k
100.1
femto_1_1M
36.3
femto_25k_50k
4.7
femto_50k_100k
32.3
femto_50k_1M
6.1135
femto_conc
2022-11-07a
femto_date
150768
femto_mean_bp
16.6
fish_FL_cm
18.5
fish_TL_cm
82.6
fish_mass_g
fish_6
fish_number
4
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Cpun090922
isolate
not applicable
isolation_source
32.76138 N 117.245 W
lat_lon
32.76138
latitute
MB jetty North
location
-117.245
longitude
30456
nanoplot_N50
30.5
nanoplot_N50_kb
11138.6
nanoplot_mean_RL
15.9
nanoplot_mean_RQ
72935715
nanoplot_total_bases
72.9
nanoplot_total_bases_Mb
6548
nanoplot_total_reads
0.65
nd_260230_b
1.75
nd_260230_m
1.333333333
nd_260230_mean
1.6
nd_260230_t
1.7
nd_260280_b
1.78
nd_260280_m
1.766666667
nd_260280_mean
1.82
nd_260280_t
888
nd_conc_b
789
nd_conc_m
633.6666667
nd_conc_mean
224
nd_conc_t
56.53102726
nd_cv
14-Oct-22
nd_date
-7
nd_days
1
nd_success
Chromis punctipinnis
http://purl.obolibrary.org/obo/NCBITaxon_231457
organism
not applicable
phenotype
44.09018753
q_cv
10/14/22
q_date
-7
q_days
34
q_total_ug
>
qbr_conc_b
446
qbr_conc_m
340
qbr_conc_mean
234
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
95etoh
storage_buffer
95etoh_4C
storage_buffer_temp
4
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
1 hr 25 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_4C_6w_SRE1
treatment
49
tube_number
82
tube_number