SAMN35061578
External Id
Salk
INSDC center name
2023-06-30T00:54:50.910Z
INSDC first public
2023-06-30T00:54:50.910Z
INSDC last update
SRS17636243
INSDC secondary accession
live
INSDC status
L001-678
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636243
SRA accession
0
SRE
23.99230928
SRE_change_N50
not collected
age
1530
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-09-09
collection_date
1400
collection_time
not applicable
cultivar
not applicable
culture_collection
9-Sep-22
death_date
Cpun_090922_95etoh_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
30-Sep-22
extraction_date
19.4
femto_100k_1M
39.8
femto_10k_25k
3.3
femto_1_10k
100.1
femto_1_1M
33.9
femto_25k_50k
4
femto_50k_100k
23.4
femto_50k_1M
7.6359
femto_conc
2022-11-07a
femto_date
70242
femto_mean_bp
16.6
fish_FL_cm
18.5
fish_TL_cm
82.6
fish_mass_g
fish_6
fish_number
4
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Cpun090922
isolate
not applicable
isolation_source
32.76138 N 117.245 W
lat_lon
32.76138
latitute
MB jetty North
location
-117.245
longitude
14563
nanoplot_N50
14.6
nanoplot_N50_kb
4590.9
nanoplot_mean_RL
16.9
nanoplot_mean_RQ
92464800
nanoplot_total_bases
92.5
nanoplot_total_bases_Mb
20141
nanoplot_total_reads
2.52
nd_260230_b
2.54
nd_260230_m
2.443333333
nd_260230_mean
2.27
nd_260230_t
1.88
nd_260280_b
1.89
nd_260280_m
1.866666667
nd_260280_mean
1.83
nd_260280_t
794
nd_conc_b
779
nd_conc_m
745.6666667
nd_conc_mean
664
nd_conc_t
9.538036787
nd_cv
31-Oct-22
nd_date
31
nd_days
1
nd_success
Chromis punctipinnis
http://purl.obolibrary.org/obo/NCBITaxon_231457
organism
not applicable
phenotype
18.39211734
q_cv
10/31/22
q_date
31
q_days
64.86666667
q_total_ug
732
qbr_conc_b
702
qbr_conc_m
648.6666667
qbr_conc_mean
512
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-59
specimen_voucher
SIO: 23-59
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
1 hr 25 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_3w_SRE0
treatment
61
tube_number
40
tube_number