SAMN35061631
External Id
Salk
INSDC center name
2023-06-30T00:53:35.920Z
INSDC first public
2023-06-30T00:53:35.920Z
INSDC last update
SRS17636383
INSDC secondary accession
live
INSDC status
L001-656
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636383
SRA accession
0
SRE
20.42234697
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1330
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Gnig_090722_RNAlater_22C_1w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
14-Sep-22
extraction_date
28.8
femto_100k_1M
14
femto_10k_25k
4.6
femto_1_10k
100.1
femto_1_1M
42.8
femto_25k_50k
10.3
femto_50k_100k
39.1
femto_50k_1M
8.0081
femto_conc
2022-11-07a
femto_date
118033
femto_mean_bp
17.8
fish_FL_cm
18.5
fish_TL_cm
128.3
fish_mass_g
fish_4
fish_number
2
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Gnig090722
isolate
not applicable
isolation_source
32.75879 N 117.2433 W
lat_lon
32.75879
latitute
MB quivira jetty south
location
-117.2433
longitude
3741
nanoplot_N50
3.7
nanoplot_N50_kb
1432.6
nanoplot_mean_RL
15.4
nanoplot_mean_RQ
1146447577
nanoplot_total_bases
1146.4
nanoplot_total_bases_Mb
800274
nanoplot_total_reads
2.21
nd_260230_b
2.21
nd_260230_m
2.206666667
nd_260230_mean
2.2
nd_260230_t
1.82
nd_260280_b
1.82
nd_260280_m
1.82
nd_260280_mean
1.82
nd_260280_t
1360
nd_conc_b
1279
nd_conc_m
1253.333333
nd_conc_mean
1121
nd_conc_t
9.698115597
nd_cv
5-Oct-22
nd_date
21
nd_days
1
nd_success
Girella nigricans
http://purl.obolibrary.org/obo/NCBITaxon_214657
organism
not applicable
phenotype
17.82999274
q_cv
10/14/22
q_date
30
q_days
144.6666667
q_total_ug
1160
qbr_conc_b
1660
qbr_conc_m
1446.666667
qbr_conc_mean
1520
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
7
storage_time_days
1
storage_time_weeks
1w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
15
time_before_EDTA_min
1 hr 5 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_1w_SRE0
treatment
23
tube_number
2
tube_number