SAMN35061700
External Id
Salk
INSDC center name
2023-06-30T00:54:51.553Z
INSDC first public
2023-06-30T00:54:51.553Z
INSDC last update
SRS17636298
INSDC secondary accession
live
INSDC status
L001-844
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636298
SRA accession
1
SRE
17.11325473
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1100
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Mcal_091222_RNAlater_22C_6w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
24-Oct-22
extraction_date
40.5
femto_100k_1M
7.2
femto_10k_25k
5.8
femto_1_10k
100.6
femto_1_1M
22.7
femto_25k_50k
25.1
femto_50k_100k
65.6
femto_50k_1M
1.4291
femto_conc
2022-11-07a
femto_date
96046
femto_mean_bp
20
fish_FL_cm
22
fish_TL_cm
176.9
fish_mass_g
fish_8
fish_number
6
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Mcal091222
isolate
not applicable
isolation_source
32.84818 N 117.2784 W
lat_lon
32.84818
latitute
LJ childrens pool
location
-117.2784
longitude
3278
nanoplot_N50
3.3
nanoplot_N50_kb
2241.2
nanoplot_mean_RL
14.5
nanoplot_mean_RQ
42230627
nanoplot_total_bases
42.2
nanoplot_total_bases_Mb
18843
nanoplot_total_reads
2.51
nd_260230_b
2.35
nd_260230_m
2.406666667
nd_260230_mean
2.36
nd_260230_t
1.87
nd_260280_b
1.85
nd_260280_m
1.86
nd_260280_mean
1.86
nd_260280_t
843
nd_conc_b
465
nd_conc_m
580.3333333
nd_conc_mean
433
nd_conc_t
39.29431508
nd_cv
31-Oct-22
nd_date
7
nd_days
1
nd_success
Medialuna californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314243
organism
not applicable
phenotype
74.12082241
q_cv
10/31/22
q_date
7
q_days
20.06666667
q_total_ug
171
qbr_conc_b
362
qbr_conc_m
200.6666667
qbr_conc_mean
69
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000478
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
RNAlater
storage_buffer
RNAlater_22C
storage_buffer_temp
22
storage_temperature_C
42
storage_time_days
6
storage_time_weeks
6w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
4 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
RNAlater_22C_6w_SRE1
treatment
71
tube_number
84
tube_number