SAMN35061670
External Id
Salk
INSDC center name
2023-06-30T00:54:51.407Z
INSDC first public
2023-06-30T00:54:51.407Z
INSDC last update
SRS17636408
INSDC secondary accession
live
INSDC status
L001-643
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636408
SRA accession
0
SRE
122.3191502
SRE_change_N50
not collected
age
1450
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-07-09
collection_date
1200
collection_time
not applicable
cultivar
not applicable
culture_collection
7-Sep-22
death_date
Kazu_090722_none_-80C_0w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
20-Oct-22
extraction_date
16.5
femto_100k_1M
25
femto_10k_25k
9.8
femto_1_10k
100.2
femto_1_1M
39.1
femto_25k_50k
10.2
femto_50k_100k
26.7
femto_50k_1M
4.1344
femto_conc
2022-11-10c
femto_date
78280
femto_mean_bp
28
fish_FL_cm
32
fish_TL_cm
519.7
fish_mass_g
fish_3
fish_number
1
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Kazu090722
isolate
not applicable
isolation_source
32.75811 N 117.2449 W
lat_lon
32.75811
latitute
MB quivira jetty south
location
-117.2449
longitude
16851
nanoplot_N50
16.9
nanoplot_N50_kb
7080.4
nanoplot_mean_RL
17.5
nanoplot_mean_RQ
15831876
nanoplot_total_bases
15.8
nanoplot_total_bases_Mb
2236
nanoplot_total_reads
1.22
nd_260230_b
1.86
nd_260230_m
1.593333333
nd_260230_mean
1.7
nd_260230_t
1.88
nd_260280_b
2.02
nd_260280_m
1.94
nd_260280_mean
1.92
nd_260280_t
14.6
nd_conc_b
13.5
nd_conc_m
13.86666667
nd_conc_mean
13.5
nd_conc_t
4.579942039
nd_cv
4-Oct-22
nd_date
-16
nd_days
1
nd_success
Kyphosus azureus
http://purl.obolibrary.org/obo/NCBITaxon_2838349
organism
not applicable
phenotype
69.14520001
q_cv
10/14/22
q_date
-6
q_days
3.07
q_total_ug
55.2
qbr_conc_b
17.8
qbr_conc_m
30.7
qbr_conc_mean
19.1
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-58
specimen_voucher
SIO: 23-58
specimen_voucher_2
none
storage_buffer
none_-80C
storage_buffer_temp
-80
storage_temperature_C
0
storage_time_days
0
storage_time_weeks
0w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
5
time_before_EDTA_min
2 hr 45 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
none_-80C_0w_SRE0
treatment
67
tube_number
8
tube_number