SAMN35061639
External Id
Salk
INSDC center name
2023-06-30T00:54:51.230Z
INSDC first public
2023-06-30T00:54:51.230Z
INSDC last update
SRS17636392
INSDC secondary accession
live
INSDC status
L001-628
LIBRARY_ID_ml
Model organism or animal
NCBI submission model
Model.organism.animal.1.0
NCBI submission package
SRS17636392
SRA accession
0
SRE
20.84621252
SRE_change_N50
not collected
age
1520
aliquot_time
Michael lab at Salk
biomaterial_provider
not collected
birth_date
Pacific ocean
birth_location
not applicable
breed
not applicable
breeding_history
wild fish
breeding_method
not applicable
cell_line
whole blood
cell_subtype
blood
cell_type
JJM Salk
collected_by
2022-12-09
collection_date
1300
collection_time
not applicable
cultivar
not applicable
culture_collection
12-Sep-22
death_date
Hcal_091222_95etoh_22C_3w
description
not collected
dev_stage
not applicable
disease
not applicable
disease_stage
not applicable
ecotype
fish
experiment
3-Oct-22
extraction_date
11.8
femto_100k_1M
43.2
femto_10k_25k
11.8
femto_1_10k
100.5
femto_1_1M
30.9
femto_25k_50k
3.1
femto_50k_100k
14.9
femto_50k_1M
1.8031
femto_conc
2022-11-09a
femto_date
73734
femto_mean_bp
18.4
fish_FL_cm
20.1
fish_TL_cm
91.1
fish_mass_g
fish_10
fish_number
8
fish_order
not applicable
genotype
USA: San Diego, CA
geo_loc_name
wild caught
growth_protocol
not applicable
health_state
Hcal091222
isolate
not applicable
isolation_source
32.84793 N 117.2779 W
lat_lon
32.84793
latitute
LJ childrens pool
location
-117.2779
longitude
24911
nanoplot_N50
24.9
nanoplot_N50_kb
8751.3
nanoplot_mean_RL
17
nanoplot_mean_RQ
38103066
nanoplot_total_bases
38.1
nanoplot_total_bases_Mb
4354
nanoplot_total_reads
2.46
nd_260230_b
2.49
nd_260230_m
2.403333333
nd_260230_mean
2.26
nd_260230_t
1.88
nd_260280_b
1.88
nd_260280_m
1.87
nd_260280_mean
1.85
nd_260280_t
762
nd_conc_b
755
nd_conc_m
694.6666667
nd_conc_mean
567
nd_conc_t
15.92389076
nd_cv
31-Oct-22
nd_date
28
nd_days
1
nd_success
Brachygenys californiensis
http://purl.obolibrary.org/obo/NCBITaxon_314000
organism
not applicable
phenotype
22.68005467
q_cv
10/31/22
q_date
28
q_days
53.53333333
q_total_ug
666
qbr_conc_b
514
qbr_conc_m
535.3333333
qbr_conc_mean
426
qbr_conc_t
whole blood
sample_type
0
seq_deep
1
seq_shallow
R000469
sequencing_run
not collected
sex
SIO:23-60
specimen_voucher
SIO: 23-60
specimen_voucher_2
95etoh
storage_buffer
95etoh_22C
storage_buffer_temp
22
storage_temperature_C
21
storage_time_days
3
storage_time_weeks
3w
storage_time_weeks_st
minus 80 C
store_cond
not applicable
strain
not applicable
stud_book_number
10
time_before_EDTA_min
2 hr 10 min
time_in_EDTA_on_ince_min
whole blood
tissue
storage study
title
95etoh_22C_3w_SRE0
treatment
62
tube_number
52
tube_number