NA
Additional.info.affecting.microbiome..M3...Biospecimen.
NA
Annual.household.income..Biospecimen.
False
Anti.infective..Biospecimen.
NA
Autism.spectrum.disorder..Biospecimen.
0.0065
Average.conc..Extract.
batch1re
Batch..OmicsFileSet.
True
Behavior.video.submitted..M3...Biospecimen.
B18012128
Biospecimen.Barcode
2018-01-11T00:00:00
Biospecimen.Date.Collected
Matched with metadata entry NT_T3_Family_043
Biospecimen.Description
152435
Biospecimen.ID
M3_043_P3_N_V1
Biospecimen.Name
0.26
Biospecimen.consumption
gram
Biospecimen.consumption.unit
Tube
Biospecimen.location..Extract.
NA
Biospecimen.mass
NA
Biospecimen.mass.unit
True
Born.by.caesarian.section..Biospecimen.
True
Born.prematurely..Biospecimen.
Almost every meal
Bread..consumption.frequency...longitudinal...Biospecimen.
NA
Childhood.behavioral.development.finding..Biospecimen.
0.007
Conc1..Extract.
0.006
Conc2..Extract.
False
Constipation..Biospecimen.
NA
Conversation.ability..Biospecimen.
Weekly
Dairy..consumption.frequency...Biospecimen.
7-10 meals per week
Dairy..consumption.frequency...longitudinal...Biospecimen.
False
Diarrhea..Biospecimen.
Mother's milk diet
Diet.during.infancy..Biospecimen.
7-10 meals per week
Dietary.fat.and.oil..consumption.frequency...longitudinal...Biospecimen.
Omnivorous diet
Dietary.regime..Biospecimen.
False
Dietary.restrictions..M3...Biospecimen.
NA
Dietary.restrictions.details..M3...Biospecimen.
True
Dietary.supplement..Biospecimen.
False
Environmental.tobacco.smoke.exposure..Biospecimen.
potty
Explain.how.you.collected.stool.sample..M3...Biospecimen.
SAMN31514681
External Id
Z18004017
Extract.Barcode
2018-02-16T00:00:00
Extract.Date.Collected
153371
Extract.ID
NA
Extract.Name
1.3
Extract.concentration
ng/uL
Extract.concentration.unit
NA
Extract.consumption
NA
Extract.consumption.unit
100
Extract.volume
uL
Extract.volume.unit
NA
Extraction.Protocol.description
Glass
Extraction.Protocol.disruption_bead_type
600
Extraction.Protocol.disruption_duration
1750
Extraction.Protocol.disruption_intensity
NA
Extraction.Protocol.disruption_temperature
2018-05-10T18:01:55.521Z
Extraction.Protocol.dtstamp
gDNA
Extraction.Protocol.extract_type
MagAttract PowerMicrobiome DNA/RNA KF
Extraction.Protocol.extraction_kit
RNAse-Free Water
Extraction.Protocol.final_buffer
316
Extraction.Protocol.id
MAD LAB High Throughput Extraction of DNA using the MagAttract PowerMicrobiome DNA/RNA KF Kit
Extraction.Protocol.name
NA
Extraction.Protocol.notes
100
Extraction.Protocol.nucleic_acid_eluted_volume
452
Extraction.Protocol.protocol_id
Magnetic Beads
Extraction.Protocol.purification_method
-20
Extraction.Protocol.storage_temperature
24
Extraction.Protocol.user_id
KF0019
Extraction.batch.ID..Extract.
157026602
Extraction.kit.lot.number..Extract.
NA
Eye.contact.finding..Biospecimen.
43
Family.group.ID..Biospecimen.
Never
Fermented.vegetable..consumption.frequency...Biospecimen.
False
Fever..Biospecimen.
False
Flu.like.symptoms..Biospecimen.
NA
Flu.shot.in.the.last..M3...Biospecimen.
6 months):Month
Flu.shot.in.the.last..MFlu.shot.in.the.last..M3...Biospecimen.
NA
Foreign.travel.within.past.months..Biospecimen.
Daily
Frequency.of.interaction.with.pet.s...Biospecimen.
Daily
Fruit..consumption.frequency...Biospecimen.
Almost every meal
Fruit..consumption.frequency...longitudinal...Biospecimen.
Tends to have normal bowel function
Functional.bowel.finding..Biospecimen.
False
GI.issues.one.month.ago..M3...Biospecimen.
False
GI.issues.this.week..M3...Biospecimen.
False
GI.issues.three.months.ago..M3...Biospecimen.
False
GI.issues.two.months.ago..M3...Biospecimen.
False
GI.issues.two.weeks.ago..M3...Biospecimen.
False
GI.symptoms.within.3.months..M3...Biospecimen.
NA
Gastrointestinal.problems..M3...Biospecimen.
36
Gestational.age..Biospecimen.
False
Gluten.allergy..Biospecimen.
9519
Host.ID
043_N
Host.Name
Control (disease status)
Host.disease.status..Biospecimen.
True
Host.interaction.with.pets..Biospecimen.
Oregon State University
INSDC center name
2023-07-01T00:00:00Z
INSDC first public
2023-07-01T13:43:05.242Z
INSDC last update
SRS15613729
INSDC secondary accession
live
INSDC status
NA
Imitation.behavior..Biospecimen.
True
Indoors.pet..Biospecimen.
NA
Indoors.pets..Biospecimen.
NA
LR.L2.2.Video.classifier.score..M3...Biospecimen.
False
Lactose.intolerance..Biospecimen.
NA
Language.ability.and.use..Biospecimen.
NA
Length.of.recent.foreign.travel..Biospecimen.
L18005236
Library.Barcode
NA
Library.Date.Collected
155006
Library.ID
NA
Library.Name
2.1
Library.concentration
ng/uL
Library.concentration.unit
NA
Library.mass
NA
Library.mass.unit
50
Library.volume
microliter
Library.volume.unit
G09
Location.on.Extraction.Plate..Extract.
Daily
Meals.prepared.at.home..consumption.frequency...Biospecimen.
Weekly
Meat..consumption.frequency...Biospecimen.
3-4 meals per week
Meats.and.seafood..consumption.frequency...longitudinal...Biospecimen.
3
Minimum.time.since.antibiotics..Biospecimen.
NA
Mobile.Autism.Risk.Assessment.Score..Biospecimen.
NA
Most.recent.GI.episode.symptoms..M3...Biospecimen.
True
Multivitamin..Biospecimen.
Human
NCBI submission model
Human.1.0
NCBI submission package
591
Natural.father.current.age..months...Biospecimen.
547
Natural.mother.current.age..months...Biospecimen.
043_A
Natural.sibling.included.in.present.study..Biospecimen.
False
Non.celiac.gluten.sensitivity..Biospecimen.
5
Normalized.concentration..Extract.
0
Number.of.pet.birds..Biospecimen.
0
Number.of.pet.cats..Biospecimen.
1
Number.of.pet.dogs..Biospecimen.
0
Number.of.pet.fish..Biospecimen.
0
Number.of.pet.horses..Biospecimen.
0
Number.of.pet.reptiles..Biospecimen.
0
Number.of.roommates..Biospecimen.
Daily
Olive.oil.used.in.cooking..M3...Biospecimen.
L18005236_M05416_23_000000000_BMJYW
OmicsFileSet.Barcode
157459
OmicsFileSet.ID
_O1
OmicsFileSet.Name
False
Other.GI.symptoms..M3...Biospecimen.
False
Other.symptoms.this.week..M3...Biospecimen.
False
Outdoors.pet..Biospecimen.
NA
Outdoors.pets..Biospecimen.
0
PCR.Protocol.BSA_final_conc
0
PCR.Protocol.KCl_final_conc
0
PCR.Protocol.MgCl2_final_conc
0
PCR.Protocol.MgSO4_final_conc
0
PCR.Protocol.Tris_HCl_final_conc
0
PCR.Protocol.Tris_SO4_final_conc
Q5 HotStart High Fidelity DNA Polymerase
PCR.Protocol.amp_polymerase
0
PCR.Protocol.amplicon_length
NA
PCR.Protocol.amplification_target
30
PCR.Protocol.cycle_annealing_duration
static
PCR.Protocol.cycle_annealing_method
50
PCR.Protocol.cycle_annealing_temp
20
PCR.Protocol.cycle_count
10
PCR.Protocol.cycle_denaturation_duration
98
PCR.Protocol.cycle_denaturation_temp
30
PCR.Protocol.cycle_extension_duration
72
PCR.Protocol.cycle_extension_temp
200
PCR.Protocol.dATP_final_conc
200
PCR.Protocol.dCTP_final_conc
200
PCR.Protocol.dGTP_final_conc
200
PCR.Protocol.dTTP_final_conc
0
PCR.Protocol.dUTP_final_conc
30
PCR.Protocol.denaturation_duration_initial
98
PCR.Protocol.denaturation_temp_initial
NA
PCR.Protocol.description
2017-11-06T22:06:22.526Z
PCR.Protocol.dtstamp
600
PCR.Protocol.extension_duration_final
72
PCR.Protocol.extension_temp
30
PCR.Protocol.extension_temp_duration
72
PCR.Protocol.extension_temp_final
0
PCR.Protocol.gelatin_final_conc
553
PCR.Protocol.id
16S_V4_Library_Preparation
PCR.Protocol.name
NA
PCR.Protocol.other_additives
0
PCR.Protocol.pcr_buffer_pH
Agencourt Ampure XP Beads
PCR.Protocol.pcr_clean_up_kits
bead
PCR.Protocol.pcr_clean_up_methods
NEB Q5 HotStart High-Fidelity 2x Master Mix
PCR.Protocol.pcr_kit
25
PCR.Protocol.pcr_volume
NA
PCR.Protocol.pcr_water
0
PCR.Protocol.pmid
0
PCR.Protocol.polymerase_units
NA
PCR.Protocol.primer_fwd_seq
NA
PCR.Protocol.primer_rev_seq
373
PCR.Protocol.protocol_id
Invitrogen Quant-it PicoGreen dsDNA Assay kit
PCR.Protocol.quantification_kit
V4
PCR.Protocol.region
2.5
PCR.Protocol.reverse_primer_final_conc
0
PCR.Protocol.tail_duration
NA
PCR.Protocol.tail_polymerase
0
PCR.Protocol.tail_temp
Veriti Thermocycler (Applied Biosystems)
PCR.Protocol.themocycler
0
PCR.Protocol.triton_X_100_final_conc
1
PCR.Protocol.user_id
False
Pet.bird..Biospecimen.
False
Pet.cat..Biospecimen.
True
Pet.dog..Biospecimen.
False
Pet.fish..Biospecimen.
False
Pet.horse..Biospecimen.
False
Pet.reptile..Biospecimen.
True
Pets.in.home..Biospecimen.
NA
Pica.disease..Biospecimen.
NA
Picks.up.objects.to.show.to.others..Biospecimen.
1911234
PicoGreen.kit.lot.number..Extract.
NA
Plays.imaginatively.when.alone..Biospecimen.
NA
Plays.imaginatively.with.others..Biospecimen.
NA
Plays.in.a.group.with.others..Biospecimen.
MS0026
Pooled.library.batch.ID..Sequencing...OmicsFileSet.
Rarely
Probiotic..consumption.frequency...Biospecimen.
False
Problems.collecting.stool.sample..M3...Biospecimen.
G05
Quant.Plate.Location1..Extract.
G06
Quant.Plate.Location2..Extract.
1
Quant.Plate.Number..Extract.
Caucasian
Racial.group..Biospecimen.
Rarely
Ready.to.eat.meals..consumption.frequency...Biospecimen.
No elevated anxiety
Recent.anxiety..caretaker.reported...Biospecimen.
False
Recently.ill..Biospecimen.
NA
Red.meat..consumption.frequency...Biospecimen.
NA
Repetitive.motion..Biospecimen.
NA
Response.to.typical.sounds..Biospecimen.
Never
Restaurant.prepared.meals..consumption.frequency...Biospecimen.
SRS15613729
SRA accession
Rarely
Seafood..consumption.frequency...Biospecimen.
NA
Self.injurious.behavior.finding..Biospecimen.
SG Soil Lab Sequencing Protocol
Sequencing.Protocol.description
2017-06-20T22:06:22.526Z
Sequencing.Protocol.dtstamp
2
Sequencing.Protocol.id
Illumina MiSeq
Sequencing.Protocol.instrument_model
7
Sequencing.Protocol.loading_lib_concentration
pmol/L
Sequencing.Protocol.loading_lib_concentration_unit
5134
Sequencing.Protocol.loading_lib_concentration_unit_ontology_id
MiSeq_V4_v1.0
Sequencing.Protocol.name
Bioanalyzer is used to asses quality of pooled library. PhiX control spike-in is 20-15% of final load.
Sequencing.Protocol.notes
359
Sequencing.Protocol.protocol_id
251
Sequencing.Protocol.read_length
MiSeq Reagent Kit v3 (600 cycle)
Sequencing.Protocol.sequencing_kit
4
Sequencing.Protocol.starting_lib_concentration
nmol/L
Sequencing.Protocol.starting_lib_concentration_unit
3135
Sequencing.Protocol.starting_lib_concentration_unit_ontology_id
10
Sequencing.Protocol.user_id
M05416_23_000000000_BMJYW
Sequencing.run.ID..OmicsFileSet.
False
Shares.bed.with.pet..Biospecimen.
NA
Sleep.pattern.finding..Biospecimen.
False
Small.pet.rodent..Biospecimen.
Drinking water from city
Source.of.drinking.water..Biospecimen.
None
Specific.food.allergy..Biospecimen.
HR
Standard.Curve..Extract.
3-4 meals per week
Starchy.food..consumption.frequency...longitudinal...Biospecimen.
2
Stool.frequency..Biospecimen.
NA
Stool.sample.challenges.explained..M3...Biospecimen.
NA
Stool.sample.collection.method..M3...Biospecimen.
Daily
Sugary.food..consumption.frequency...Biospecimen.
Never
Sweetened.drink..consumption.frequency...Biospecimen.
No, I did not use the toilet cover
Toilet.cover..M3...Biospecimen.
True
Toilet.trained..Biospecimen.
100
Total.Volume.of.Sample..Extract.
NA
Travel.outside.US..notes...Biospecimen.
NA
Travel.to.country..Biospecimen.
NA
Understands.speech..Biospecimen.
Daily
Vegetable..consumption.frequency...Biospecimen.
Never or less than once per week
Vegetable..consumption.frequency...longitudinal...Biospecimen.
Never
Vitamin.B.complex.supplement..consumption.frequency...Biospecimen.
Never
Vitamin.D..consumption.frequency...Biospecimen.
384.6153846
Volume.DNA.to.add..Extract.
-284.6153846
Volume.H2O.to.add..Extract.
Daily
Whole.grain..consumption.frequency...Biospecimen.
Timepoint 3
Within.study.sampling.date..Biospecimen.
49
age
months
age_units
not applicable
biomaterial_provider
not applicable
isolate
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
N
phenotype
male
sex
stool
tissue
Human sample from Homo sapiens
title