SAMN30350024
External Id
National Oceanic & Atmospheric Administration
INSDC center name
2022-08-18T00:00:00Z
INSDC first public
2022-08-31T09:56:53.045Z
INSDC last update
live
INSDC status
MIMAG.water
NCBI submission model
MIMAG.water.6.0
NCBI submission package
2009-09-29/2009-10-03
collection_date
200-650m
depth
SAMN30349662, SAMN30349663, SAMN30349664, SAMN30349665, SAMN30349666, SAMN30349667, SAMN30349668, SAMN30349669, SAMN30349670, SAMN30349671
derived-from
Thalassarchaeaceae MGIIb-O1 sp.
description
sea water [ENVO:00002149]
env_broad_scale
water column [ENVO:06105011]
env_local_scale
water column [ENVO:06105011]
env_medium
1
environmental-sample
USA: Green Canyon, Gulf of Mexico
geo_loc_name
Bin03_107
isolate
10 Gulf of Mexico water column samples before the DWH oil spill
isolation_source
27.724 N 91.23 W
lat_lon
seawater metagenome
metagenome-source
1
metagenomic
Candidatus Poseidoniales archaeon
http://purl.obolibrary.org/obo/NCBITaxon_2163009
organism
CTD cast/ROV
samp_collect_device
MAG co-assembled using MEGAHIT v1.2.9 and binned with the default parameters of MaxBin v2.2.7 (44) and MetaBat v2.12.1 (45) using contig length thresholds of 1,500 bp, 2,000 bp, and 2,500 bp.
samp_mat_process
80 C
samp_store_temp
metagenomic assembly
sample-type
0.2 m
size_frac
CF1,CF2,SF1,SF5,SF4,CF6,CF14,CF15,CF8,CF9
source_material_id
Co-assembled MAG from Gulf of Mexico water column
title