555
#_contigs
510
#_scaffolds
root (UID1)
CheckM_marker_lineage
SAMN15784263
External Id
32.7
GC
3.09
GC_std_(scaffolds_>_1kbp)
Utrecht University
INSDC center name
2020-08-11T00:00:00Z
INSDC first public
2023-07-28T21:08:02.943Z
INSDC last update
live
INSDC status
BWA-MEM v0.7.12-r1039
MAG_coverage_software
11652
N50_(contigs)
13272
N50_(scaffolds)
MIMAG.water
NCBI submission model
MIMAG.water.6.0
NCBI submission package
MAG
analysis_project_type
Low Quality Draft
assembly quality
metaSPAdes v3.8.0
assembly software
kmer+coverage
bin_parameters
MetaBAT v0.32.4
binning software
2013-06-09/2013-06-10
collection date
100.00
completeness
CheckM v1.0.7 in lineage specific workflow
completeness software
marker gene based
completeness_approach
122.51
contamination
50-2000 m
depth
This BioSample is a metagenomic assembly obtained from the 15 individual BioSamples: SAMN15667690, SAMN15667691, SAMN15667692, SAMN15667693, SAMN15667694, SAMN15667695, SAMN15667696, SAMN15667697, SAMN15667698, SAMN15667699, SAMN15667700, SAMN15667701, SAMN15667702, SAMN15667703, SAMN15667704.
derived_from
MAG generated with MetaBAT v0.32.4 from the cross-assembly of 15 shotgun metagenomes across the Black Sea water column. Taxonomic classification is based on Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.
description
marine
env_broad_scale
Black Sea
env_local_scale
saline water
env_medium
1
environmental sample
4357826
genome_size_(bp)
NIOZ-UU21
isolate
Suspended Particulate Matter (SPM) from the Black Sea western gyre
isolation source
42.896667 N 30.678333 E
lat lon
65964
longest_contig_(bp)
65964
longest_scaffold_(bp)
7819
mean_contig_length_(bp)
8544
mean_scaffold_length_(bp)
marine metagenome
metagenome source
1
metagenomic
Actinomycetes bacterium
http://purl.obolibrary.org/obo/NCBITaxon_1883427
organism
no
reassembly_post_binning
McLane WTS_LV in situ pumps, pre-combusted glass fiber filters with 142 mm diameter and 0.7 um pore size
samp_collect_device
-80 degrees C
samp_store_temp
metagenomic assembly
sample-type
> 0.7 um
size_frac
2.25
strain_heterogeneity
Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.
taxonomic_classification_software
metagenomic assembly
title
2107 m
tot_depth_water_col