SAMN14532988
External Id
GEOMAR Helmholtz Centre for Ocean Research Kiel
INSDC center name
2020-07-24T00:00:00Z
INSDC first public
2023-07-28T21:07:57.967Z
INSDC last update
live
INSDC status
Microbe, viral or environmental
NCBI submission model
Microbe.1.0
NCBI submission package
DFO Canada
collected by
2017
collection date
This BioSamples is a metagenomic assembly obtained from the marine metagenome BioSamples: SAMN14422879, SAMN14422880, SAMN14422881, SAMN14422882, SAMN14422883, SAMN14422895, SAMN14422896, SAMN14422897, SAMN14422898, SAMN14422900, SAMN14422901, and SAMN14422906
derived-from
find sampling details on https://doi.pangaea.de/10.1594/PANGAEA.913907; co-assembly (megahit v1.1.3) of metagenomes from Vazella pourtalesii from the sea floor and a mooring float and respective sea water references; binning (metabat, metabat2, maxbin2), bin refinement and reassembly (SPAdes v3.12.0) in metaWRAP; trailing letter in bin name indicates assembly version (o for original, p for permissive, or s for strict); enrichment in Vazella pourtalesii or sea water determined by LDA scores with LEfSe v1.0;
description
1
environmental sample
Canada: Scotian Shelf
geo loc name
Vazella pourtalesii
host
bin97s
isolate
pooled samples from sponge host and sea water
isolation source
marine metagenome
metagenome source
1
metagenomic
Actinomycetes bacterium
http://purl.obolibrary.org/obo/NCBITaxon_1883427
organism
metagenomic assembly
sample type
metagenomic assembly
sample-type
Microbe sample from Actinomycetes bacterium
title