M16-935-T
ERS2006627
SRA accession
2016
collected by
Netherlands
collection date
Human
http://purl.obolibrary.org/obo/NCBITaxon_9606
common name
Brain
http://purl.obolibrary.org/obo/UBERON_0000955
derived from
Glioblastoma - Glioblastoma with TP53 p.R273C c.817C&gt;T, EGFR p.K212Afs*48 c.634_694del, NOTCH1 p.V2285I c.6853G&gt;A, 1P ROH,19Q LOH, Chr7 LOH (EGFR ampl), LOH chr10 (incl PTEN)
description
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
organism
Homo sapiens
http://purl.obolibrary.org/obo/NCBITaxon_9606
scientific name
male
http://purl.obolibrary.org/obo/PATO_0000384
sex
Unconfirmed
specimen voucher
human
http://purl.obolibrary.org/obo/NCBITaxon_9606
subject
Development of the web-application SNPitty that allows interactive visualization and interrogation of Variant Call Format (VCF) files by utilizing B-allele frequencies (BAF) of single nucleotide polymorphisms (SNPs), coverage metrics and copy-numbers.
submission description
GSB-5789
submission identifier
SNPitty: An intuitive web-application for interactive B-allele frequency and copy-number visualization of next generation sequencing data.
submission title