AFR_AFR
ERS3378287
SRA accession
AFR
Unique Name Prefix
Farmers
collected by
cattle
common name
Afrikaner - A pool of 30 samples
description
South Africa
geographic location (country and/or sea)
South Africa
geographic location (region and locality)
Cattle
host
Blood, hair
material
Bos indicus
http://purl.obolibrary.org/obo/NCBITaxon_9915
organism
Bos indicus
scientific name
cattle
subject
The aim of this study was to perform genome-wide marker discovery in three South African indigenous cattle breeds through whole genome sequencing of pooled DNA samples, with specific objectives to search for new variants, validate newly identified variants using 1000 Bull Genomes Project data, perform functional annotation and enrichment analysis on identified SNPs, identify selective sweeps and a panel of breed-specific markers to discriminate between breeds&10;
submission description
GSB-1193
submission identifier
Genome-wide marker discovery in three South African indigenous cattle breeds (Afrikaner, Drakensberger and Nguni) using whole genome sequencing
submission title