group20
ERS2330161
SRA accession
Russell S. Fraser
collected by
cattle
common name
Pooled DNA from 5 cattle - Cattle were aborted or died in the perinatal period of infectious causes
description
Canada
geographic location (country and/or sea)
Guelph, Ontario
geographic location (region and locality)
Bos taurus
http://purl.obolibrary.org/obo/NCBITaxon_9913
organism
Bos taurus
http://purl.obolibrary.org/obo/NCBITaxon_9913
scientific name
This study targeted the bovine collagenous lectins, ficolins, MASP genes, and peptidoglycan recognition proteins of cattle. Hepatic DNA was sourced from 120 cattle presenting for postmortem examination at the University of Guelph. The animals were divided into pools of 5 animals each based on the similarity of postmortem diagnosis and all pools were sequenced on an Illumina MiSeq. Variants were called using GATK and allele frequency analysis performed using Popoolation2.
submission description
GSB-74
submission identifier
Targeted re-sequencing of the bovine collagenous lectins and peptidoglycan recognition proteins
submission title
liver
http://purl.obolibrary.org/obo/UBERON_0002107
tissue type