344
ERS2809027
SRA accession
natural population
description
Picea abies
http://purl.obolibrary.org/obo/NCBITaxon_3329
organism
Picea abies
scientific name
Development of a Picea abies SNPs catalog. A bioinformatics pipeline was developed and allowed to detect 61,771 in silico SNPs distributed among 13,543 genes. The true positive rate for this set of SNPs was estimated using a sample of 5571 predicted SNPs by genotyping 1130 P. abies trees using an Illumina Infinium iSelect SNP array. The true positive rate for the set of in silico SNPs was 84.2% and was comparable to the genotyping success rate of 85.4% for a set of 89 P. abies control SNPs successfully genotyped on previous Illumina GoldenGate genotyping arrays. Nucleotide diversity was analyzed across functional categories
submission description
GSB-485
submission identifier
Picea abies genomic ressources
submission title