SNP- Genotype5
ERS2496013
SRA accession
Aparna Chadhari
collected by
2016-06-02
collection date
Giant freshwater prawn
common name
SNP_GENOTYPING_S5_M_ROSENB - Adult specimens were taken from the highest performing families of the 6th generation of growth selected prawns and two pleopods were dissected from each individual.
description
India
geographic location (country and/or sea)
ICAR-CIFA, Bhubaneswar (Lat: 20° 10' 59.358'' N, Long: 85° 51' 5.1948'' E)
geographic location (region and locality)
Macrobrachium rosenbergii
http://purl.obolibrary.org/obo/NCBITaxon_79674
organism
Macrobrachium rosenbergii
scientific name
Eleven M. rosenbergii genes having important physiological roles were selected for this study. Agarwal et al. (2016) had mined SNPs from certain regions of these genes and one fragment was selected from each gene based on the presence of highest number of SNPs. These genes fragment were amplified using Sanger sequencing method from 23 growth selected individuals from ICAR-CIFA, Odisha (Lat: 20° 10' 59.358'' N, Long: 85° 51' 5.1948'' E) and 23 wild individuals from Vembanad Lake, Kerala (Lat: 9° 34' 59.9988'' N, Long: 76° 25' 0.0012'' E) . A total of 45 SNPs were found from these gene fragments.
submission description
GSB-114
submission identifier
Genotyping of Growth Selected Macrobrachium rosenbergii Using SNPs from Expressed Sequences
submission title